View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1506_low_20 (Length: 262)

Name: NF1506_low_20
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1506_low_20
NF1506_low_20
[»] chr6 (19 HSPs)
chr6 (1-153)||(29136409-29136561)
chr6 (39-192)||(29123220-29123373)
chr6 (47-192)||(32745699-32745844)
chr6 (50-192)||(29144360-29144502)
chr6 (88-185)||(29299150-29299247)
chr6 (50-185)||(29152923-29153058)
chr6 (50-192)||(29130393-29130535)
chr6 (62-192)||(34279370-34279500)
chr6 (89-165)||(32973515-32973591)
chr6 (50-168)||(23216815-23216933)
chr6 (71-165)||(21379307-21379401)
chr6 (51-183)||(29149712-29149844)
chr6 (50-192)||(34259099-34259241)
chr6 (71-116)||(29012044-29012089)
chr6 (104-185)||(34281046-34281127)
chr6 (92-193)||(25320190-25320291)
chr6 (92-193)||(26149883-26149984)
chr6 (105-148)||(32958423-32958466)
chr6 (71-149)||(21375215-21375293)
[»] scaffold0134 (1 HSPs)
scaffold0134 (50-190)||(17097-17237)
[»] chr4 (7 HSPs)
chr4 (96-192)||(9603448-9603544)
chr4 (50-192)||(9594599-9594741)
chr4 (89-192)||(9573444-9573548)
chr4 (98-192)||(54295949-54296043)
chr4 (62-190)||(9568300-9568431)
chr4 (62-192)||(9582815-9582945)
chr4 (62-192)||(9588510-9588640)
[»] chr5 (6 HSPs)
chr5 (50-192)||(27174314-27174456)
chr5 (92-192)||(42777087-42777187)
chr5 (71-192)||(42782260-42782381)
chr5 (102-183)||(40548366-40548447)
chr5 (71-192)||(41227002-41227123)
chr5 (51-183)||(37512003-37512135)
[»] chr7 (2 HSPs)
chr7 (66-168)||(42445424-42445526)
chr7 (50-144)||(25627341-25627435)
[»] scaffold0129 (1 HSPs)
scaffold0129 (71-184)||(34379-34492)
[»] chr2 (3 HSPs)
chr2 (137-189)||(7525013-7525065)
chr2 (131-189)||(7436181-7436239)
chr2 (75-189)||(7499768-7499882)
[»] chr1 (1 HSPs)
chr1 (71-183)||(51875534-51875646)
[»] scaffold0831 (1 HSPs)
scaffold0831 (55-117)||(2107-2169)
[»] scaffold0054 (1 HSPs)
scaffold0054 (107-148)||(38589-38630)
[»] chr8 (1 HSPs)
chr8 (66-114)||(3368670-3368718)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 29136561 - 29136409
Alignment:
Q  1 cgtaacctttaggagtaaagatgatccgtcatcggaacaagaattagatgataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataag 100  Q
    ||||||||||||||||| ||||||||| ||||| |||  ||||||||||||||| ||||||||| |||| |||||||||||| |||||||||||||||||    
T  29136561 cgtaacctttaggagtagagatgatccatcatcagaaagagaattagatgataacaaattgttgcggaacatgttcatgaaacgagtattttcaaataag 29136462  T
Q  101 agagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaa 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29136461 agagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaa 29136409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 29123373 - 29123220
Alignment:
Q  39 aagaattagatgataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaa 138  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||| |||| | ||||||||||||||||||| |||| ||||||  || || ||    
T  29123373 aagaattagatgataagaaattgttgcggaacatgttcatgaaatgagtatcttcagacaagagagaccatgatttgcgaacggattcaactcgtttaaa 29123274  T
Q  139 agatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtatata 192  Q
    ||||||||||||||| |||||||||||||| || ||||||||||||| ||||||    
T  29123273 agatttaagaggcaattttgatagaatggagaaggcaatatcatcagatatata 29123220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 32745699 - 32745844
Alignment:
Q  47 gatgataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaa 146  Q
    |||||||||||||||||| | || |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||  || || ||||||||||    
T  32745699 gatgataagaaattgttgcgaaacatgttcatgaaatgagtattttcagataagagagaccatgatttgcgaacgcattcaaatcgtttaaaagatttaa 32745798  T
Q  147 gaggcaactttgatagaatggaaaaagcaatatcatcaggtatata 192  Q
    |||| |  |||||||| ||||| || ||||||||||||||||||||    
T  32745799 gaggtagttttgataggatggagaaggcaatatcatcaggtatata 32745844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 29144502 - 29144360
Alignment:
Q  50 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 149  Q
    ||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| |||| ||||| | ||||||| |||  ||||| |||||||||||||    
T  29144502 gataagaaattgttgcggaacatgttcatgaaatgagtatcttcaaataagagataccaagatttacgaacgcatccaaatcgcttcaaagatttaagag 29144403  T
Q  150 gcaactttgatagaatggaaaaagcaatatcatcaggtatata 192  Q
    |||| || ||||||||||| || |||||||||||  |||||||    
T  29144402 gcaatttcgatagaatggataaggcaatatcatcgagtatata 29144360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 29299247 - 29299150
Alignment:
Q  88 attttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcag 185  Q
    ||||||||| ||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  29299247 attttcaaacaagagagaccatgatttgcgaacacattcaaaacgcttaaaagatttaagaggcaactttgagagaatggaaaaagctatatcatcag 29299150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 29152923 - 29153058
Alignment:
Q  50 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 149  Q
    ||||||||||| ||| |||| ||||||||||| |||   |||||| ||| ||| ||||||||||||| ||| ||||||| | ||||||||||||||||||    
T  29152923 gataagaaattattgcggaacatgttcatgaagtgatgtttttcagataggagggaccatgatttgcgaacacattcaaaatgcttgaaagatttaagag 29153022  T
Q  150 gcaactttgatagaatggaaaaagcaatatcatcag 185  Q
    |||| ||||| |||||||| || |||||||||||||    
T  29153023 gcaattttgagagaatggagaaggcaatatcatcag 29153058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 29130535 - 29130393
Alignment:
Q  50 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 149  Q
    ||||||| | |||||||||| |||||||||||   | |||||||| | ||||||||||||||||| | |||| ||||||  |||||||||||||||||||    
T  29130535 gataagagactgttgtggaacatgttcatgaacaaactattttcatacaagagagaccatgatttacgaacggattcaaatcgcttgaaagatttaagag 29130436  T
Q  150 gcaactttgatagaatggaaaaagcaatatcatcaggtatata 192  Q
    |||||||||| |||||||| ||   |||||||| |||||||||    
T  29130435 gcaactttgagagaatggagaagtgaatatcatgaggtatata 29130393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 192
Target Start/End: Original strand, 34279370 - 34279500
Alignment:
Q  62 ttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgata 161  Q
    |||||||| ||||||||||| |||  ||||||| |||| ||| |||||||||| ||||| ||||||| || |||||||||||||||||| || ||||| |    
T  34279370 ttgtggaacatgttcatgaagtgatgattttcagataaaagataccatgatttacaaacacattcaaaactcttgaaagatttaagaggtaattttgaaa 34279469  T
Q  162 gaatggaaaaagcaatatcatcaggtatata 192  Q
    ||||||| || ||||||||||||| ||||||    
T  34279470 gaatggagaaggcaatatcatcagatatata 34279500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 32973515 - 32973591
Alignment:
Q  89 ttttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaat 165  Q
    |||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||    
T  32973515 ttttcagataagagagaccatgatttacaaacacattcaaaacgcttgaaagatttaagaggcaattttgatagaat 32973591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 23216815 - 23216933
Alignment:
Q  50 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 149  Q
    |||||||| || ||| | || |||||||||||||||| ||| |||| |||||||||||||||||||| ||| |||||||  | ||| |||||||||||||    
T  23216815 gataagaagttattgcgaaacatgttcatgaaatgagaattatcaattaagagagaccatgatttgcgaacacattcaaatctcttcaaagatttaagag 23216914  T
Q  150 gcaactttgatagaatgga 168  Q
    | ||||| |||||||||||    
T  23216915 gtaacttcgatagaatgga 23216933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 21379307 - 21379401
Alignment:
Q  71 atgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaat 165  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| |  |||||| |||  ||||| |||||||||||||| ||||| ||||||||    
T  21379307 atgttcatgaaataagtgttttcaaataagagagaccatgatttacggacgcatccaaatcgcttcaaagatttaagaggtaacttcgatagaat 21379401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 183
Target Start/End: Original strand, 29149712 - 29149844
Alignment:
Q  51 ataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagagg 150  Q
    |||||||||||| | | || ||| ||||||| ||| |||| ||| | ||||||||||||||||||| |||||||||||  |  || ||||||||||||||    
T  29149712 ataagaaattgtggcgaaacatgctcatgaagtgattattctcagacaagagagaccatgatttgcgaacgcattcaaatcagttaaaagatttaagagg 29149811  T
Q  151 caactttgatagaatggaaaaagcaatatcatc 183  Q
    ||| ||||| |||||||| || || ||||||||    
T  29149812 caattttgagagaatggagaaggctatatcatc 29149844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 192
Target Start/End: Original strand, 34259099 - 34259241
Alignment:
Q  50 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 149  Q
    |||| |||||||||| |||| |||||||||||| |||| | ||  |||||||||||||||||||| | ||||||| |||  ||||| ||||| |||||||    
T  34259099 gatatgaaattgttgcggaacatgttcatgaaacgagtgtcttgtaataagagagaccatgatttacgaacgcatccaaatcgctttaaagacttaagag 34259198  T
Q  150 gcaactttgatagaatggaaaaagcaatatcatcaggtatata 192  Q
    | |  ||   |||||| || || |||||||||| |||||||||    
T  34259199 gtagtttgtgtagaatagagaaggcaatatcatgaggtatata 34259241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 29012089 - 29012044
Alignment:
Q  71 atgttcatgaaatgagtattttcaaataagagagaccatgatttgc 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  29012089 atgttcatgaaatgagtattttcaaacaagagagaccatgatttgc 29012044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 34281127 - 34281046
Alignment:
Q  104 gaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcag 185  Q
    ||||||||||||| ||  || |||| |||||||||||||||||||||||| ||||| ||||| || || |||||||||||||    
T  34281127 gaccatgatttgcgaagacactcaaaacgcttgaaagatttaagaggcaattttgagagaatagagaaggcaatatcatcag 34281046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 193
Target Start/End: Original strand, 25320190 - 25320291
Alignment:
Q  92 tcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtatat 191  Q
    ||||||||||| ||||||||||| | ||  |||| ||  ||||| ||||||||||| ||||||||||||||||| ||||  || |||||||| | |||||    
T  25320190 tcaaataagagggaccatgattttcgaatacattgaaatcgcttaaaagatttaagcggcaactttgatagaattgaaacggctatatcatctgatatat 25320289  T
Q  192 aa 193  Q
    ||    
T  25320290 aa 25320291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 193
Target Start/End: Original strand, 26149883 - 26149984
Alignment:
Q  92 tcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtatat 191  Q
    ||||||||||| ||||||||||| | ||  |||| ||  ||||| ||||||||||| ||||||||||||||||| ||||  || |||||||| | |||||    
T  26149883 tcaaataagagggaccatgattttcgaatacattgaaatcgcttaaaagatttaagcggcaactttgatagaattgaaacggctatatcatctgatatat 26149982  T
Q  192 aa 193  Q
    ||    
T  26149983 aa 26149984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 32958423 - 32958466
Alignment:
Q  105 accatgatttgcaaacgcattcaatacgcttgaaagatttaaga 148  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||    
T  32958423 accatgatttgcaaacgaattcaaaacgcatgaaagatttaaga 32958466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 21375215 - 21375293
Alignment:
Q  71 atgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 149  Q
    ||||||||||||| | | |||||||||||||| |||||||||||  | |||||| |||  | ||| |||||||||||||    
T  21375215 atgttcatgaaataaatgttttcaaataagagggaccatgatttatagacgcatccaaatcacttcaaagatttaagag 21375293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 50 - 190
Target Start/End: Original strand, 17097 - 17237
Alignment:
Q  50 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 149  Q
    ||||||||||| ||| | ||  |||||||||||| || ||| |||| ||||||||||||||||||||||||||||||||  | ||| |||||||||||||    
T  17097 gataagaaattattgcgaaacttgttcatgaaataagaattatcaattaagagagaccatgatttgcaaacgcattcaaatctcttcaaagatttaagag 17196  T
Q  150 gcaactttgatagaatggaaaaagcaatatcatcaggtata 190  Q
    ||||||||||||||||||| ||   |||||| |||||||||    
T  17197 gcaactttgatagaatggataagctaatatcgtcaggtata 17237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 9603448 - 9603544
Alignment:
Q  96 ataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtatata 192  Q
    ||||||||||||||| ||| |||| ||||||||  ||||| ||||||||||||||||| || ||||||||||| || ||||||||||||||||||||    
T  9603448 ataagagagaccatggtttacaaaagcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatata 9603544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 192
Target Start/End: Original strand, 9594599 - 9594741
Alignment:
Q  50 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 149  Q
    ||||||| ||||||| |||| ||||||||||| |||   |||||| ||||||||||||||| ||||| ||| |||||||  ||||| |||||||||| ||    
T  9594599 gataagagattgttgcggaacatgttcatgaagtgatcgttttcacataagagagaccatgctttgcgaacacattcaaatcgcttaaaagatttaatag 9594698  T
Q  150 gcaactttgatagaatggaaaaagcaatatcatcaggtatata 192  Q
    | || || ||||||||||| || | ||||||||||| ||||||    
T  9594699 gtaatttagatagaatggagaaggaaatatcatcagctatata 9594741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 9573548 - 9573444
Alignment:
Q  89 ttttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagc-aatatcatcaggt 187  Q
    ||||||| ||| |||||||||||||||| ||| |||||||  ||||| |||||||||| |||||| || ||||||||||| || || |||||||||||||    
T  9573548 ttttcaattaacagagaccatgatttgcgaacacattcaaatcgcttaaaagatttaataggcaatttggatagaatggagaaggcaaatatcatcaggt 9573449  T
Q  188 atata 192  Q
    |||||    
T  9573448 atata 9573444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 54295949 - 54296043
Alignment:
Q  98 aagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtatata 192  Q
    ||||||||||||||| | | |||||||||||  || || ||||||||||||||||  ||||||| |||||| || | ||||||||||||||||||    
T  54295949 aagagagaccatgatctacgaacgcattcaaatcgtttaaaagatttaagaggcagttttgataaaatggagaaggaaatatcatcaggtatata 54296043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 190
Target Start/End: Complemental strand, 9568431 - 9568300
Alignment:
Q  62 ttgtggaatatgttcatgaaatgagtattttcaaataaga---gagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttg 158  Q
    |||| ||| ||||||||||| ||||  |||||| ||||||   ||||||||||||| | |||||||||||  ||||| | |||||||| |||||| || |    
T  9568431 ttgtagaacatgttcatgaagtgagggttttcagataagatcagagaccatgatttacgaacgcattcaaatcgcttaatagatttaaaaggcaatttgg 9568332  T
Q  159 atagaatggaaaaagcaatatcatcaggtata 190  Q
    ||||||| || || ||||||||||||| ||||    
T  9568331 atagaatagagaaggcaatatcatcagatata 9568300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 192
Target Start/End: Original strand, 9582815 - 9582945
Alignment:
Q  62 ttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgata 161  Q
    |||| ||| ||||||||||| ||||  |||||| ||||||||||||||| ||||| || ||||||||  || || |  ||||||| |||||| || ||||    
T  9582815 ttgtagaacatgttcatgaagtgagggttttcagataagagagaccatgctttgcgaatgcattcaaaccgtttaatggatttaaaaggcaatttggata 9582914  T
Q  162 gaatggaaaaagcaatatcatcaggtatata 192  Q
     ||| || || ||||| ||||||||||||||    
T  9582915 aaatagagaaggcaatttcatcaggtatata 9582945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 192
Target Start/End: Original strand, 9588510 - 9588640
Alignment:
Q  62 ttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgata 161  Q
    |||| ||| ||||||||||| ||||  |||||| ||||||||||||||| ||||| || ||||||||  || || |  ||||||| |||||| || ||||    
T  9588510 ttgtagaacatgttcatgaagtgagggttttcagataagagagaccatgctttgcgaatgcattcaaaccgtttaatggatttaaaaggcaatttggata 9588609  T
Q  162 gaatggaaaaagcaatatcatcaggtatata 192  Q
     ||| || || ||||| ||||||||||||||    
T  9588610 aaatagagaaggcaatttcatcaggtatata 9588640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 192
Target Start/End: Original strand, 27174314 - 27174456
Alignment:
Q  50 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 149  Q
    ||||||||||||||  |||  |||||||||||| ||| |||||||||||| || || ||||||||||  |||||| |||  ||||| |||||||| ||||    
T  27174314 gataagaaattgttacggaccatgttcatgaaaagaggattttcaaataaaagtgatcatgatttgcgtacgcatccaaatcgcttcaaagatttcagag 27174413  T
Q  150 gcaactttgatagaatggaaaaagcaatatcatcaggtatata 192  Q
    | || ||||||||| | || || | |||||||||| |||||||    
T  27174414 gtaattttgatagatttgagaaggtaatatcatcatgtatata 27174456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 42777187 - 42777087
Alignment:
Q  92 tcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtatat 191  Q
    |||||||||||||||||||||||||| || |||||||  || |||   ||||||| ||| || ||||| ||||| || ||||||||||||||| ||||||    
T  42777187 tcaaataagagagaccatgatttgcacacacattcaaatcgtttggttgatttaataggtaattttgagagaatagagaaagcaatatcatcatgtatat 42777088  T
Q  192 a 192  Q
    |    
T  42777087 a 42777087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 192
Target Start/End: Complemental strand, 42782381 - 42782260
Alignment:
Q  71 atgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaa 170  Q
    ||||||||||||  || |||||||||||  || ||||||||||| |  |||||| |||  ||||| ||||||||||  || || ||||||||||| || |    
T  42782381 atgttcatgaaaaaaggattttcaaatagaagtgaccatgatttacgtacgcatccaaatcgcttcaaagatttaatcggtaattttgatagaattgaga 42782282  T
Q  171 aagcaatatcatcaggtatata 192  Q
    | | |||||||||| |||||||    
T  42782281 aggtaatatcatcatgtatata 42782260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 40548447 - 40548366
Alignment:
Q  102 gagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatc 183  Q
    ||||||||||||| |  | ||||||||  ||||| |||||||||| ||| |  ||| ||||||||||||| |||||||||||    
T  40548447 gagaccatgatttacttatgcattcaaatcgcttcaaagatttaacaggaagtttttatagaatggaaaaggcaatatcatc 40548366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 192
Target Start/End: Complemental strand, 41227123 - 41227002
Alignment:
Q  71 atgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaa 170  Q
    ||||||||||||  || |||||||||||  || ||||||||||| || | ||||  ||  ||||| ||||||||||  || || ||||||||||| || |    
T  41227123 atgttcatgaaaaaaggattttcaaatagaagggaccatgatttacatatgcatcgaaatcgctttaaagatttaatcggtaattttgatagaattgaga 41227024  T
Q  171 aagcaatatcatcaggtatata 192  Q
    | | |||||||||| |||||||    
T  41227023 aggtaatatcatcatgtatata 41227002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 183
Target Start/End: Complemental strand, 37512135 - 37512003
Alignment:
Q  51 ataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagagg 150  Q
    ||||||||||||||  ||| ||| |||| || ||||  |||||||  ||  |||||||||||||||| ||  ||||||  || || |||||||| |||||    
T  37512135 ataagaaattgttgctgaacatgctcataaattgagggttttcaagcaattgagaccatgatttgcatacatattcaaatcgtttcaaagatttgagagg 37512036  T
Q  151 caactttgatagaatggaaaaagcaatatcatc 183  Q
    ||  ||||||| |||||| || ||||| |||||    
T  37512035 cagttttgataaaatggagaaggcaatgtcatc 37512003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 168
Target Start/End: Complemental strand, 42445526 - 42445424
Alignment:
Q  66 ggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaat 165  Q
    |||| |||||||||||||||   |||||| |||||||||||||  |||| | ||| |||||||  ||||| |||||||||||||| || ||||||| |||    
T  42445526 ggaacatgttcatgaaatgatggttttcagataagagagaccacaatttacgaacacattcaaatcgcttaaaagatttaagaggtaattttgatataat 42445427  T
Q  166 gga 168  Q
    |||    
T  42445426 gga 42445424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 25627435 - 25627341
Alignment:
Q  50 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagattt 144  Q
    |||| |||||| ||| |||| ||| ||||||||  ||  ||||||||||||||||||||||||||   ||||||| ||  |||||| ||||||||    
T  25627435 gatatgaaattattgcggaacatggtcatgaaagaagggttttcaaataagagagaccatgatttcttaacgcatccagaacgcttcaaagattt 25627341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 34379 - 34492
Alignment:
Q  71 atgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaa 170  Q
    ||||| ||||||| || ||| ||||||||| ||||||||||||| |  |||||   || ||| ||  |||||||||||||||| |||||||||||| |||    
T  34379 atgtttatgaaattaggattctcaaataagtgagaccatgatttacgtacgcaactaaaacgttttgaagatttaagaggcaattttgatagaatgaaaa 34478  T
Q  171 aagcaatatcatca 184  Q
    | |||| |||||||    
T  34479 atgcaagatcatca 34492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 7525013 - 7525065
Alignment:
Q  137 aaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtat 189  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||    
T  7525013 aaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtat 7525065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 7436181 - 7436239
Alignment:
Q  131 cgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtat 189  Q
    ||||| ||||||||||||||||| |||||||||||||| |  |||| ||||||||||||    
T  7436181 cgcttcaaagatttaagaggcaaatttgatagaatggagattgcaacatcatcaggtat 7436239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 7499768 - 7499882
Alignment:
Q  75 tcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagc 174  Q
    |||| |||||||||| |||||||||||||| ||||||||| || |||||  |||  ||||| |||| ||| |  ||||| ||||||| ||||   || ||    
T  7499768 tcataaaatgagtatcttcaaataagagagtccatgatttacatacgcaaccaaaccgcttcaaagtttttaccggcaattttgatacaatgagcaatgc 7499867  T
Q  175 aatatcatcaggtat 189  Q
    |||||||||| ||||    
T  7499868 aatatcatcatgtat 7499882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 51875534 - 51875646
Alignment:
Q  71 atgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaa 170  Q
    |||||||||||| ||| |||||| |||||||| ||||||||||| || || ||| |||  ||||| ||||||| |||||| |  ||||||||||| || |    
T  51875534 atgttcatgaaacgaggattttcgaataagagtgaccatgatttacatacacatccaaatcgctttaaagattgaagaggtagttttgatagaatcgaga 51875633  T
Q  171 aagcaatatcatc 183  Q
    |  ||||||||||    
T  51875634 agacaatatcatc 51875646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0831 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 2107 - 2169
Alignment:
Q  55 gaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgca 117  Q
    |||||||||| | || || ||||||||||||| || ||||||||| ||||||||||| |||||    
T  2107 gaaattgttgcgaaacattttcatgaaatgaggatcttcaaataaaagagaccatgacttgca 2169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 38630 - 38589
Alignment:
Q  107 catgatttgcaaacgcattcaatacgcttgaaagatttaaga 148  Q
    ||||||||||||| | |||||| |||||||||||||||||||    
T  38630 catgatttgcaaatggattcaaaacgcttgaaagatttaaga 38589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 3368670 - 3368718
Alignment:
Q  66 ggaatatgttcatgaaatgagtattttcaaataagagagaccatgattt 114  Q
    |||| |||| |||||||| ||  ||||||||||||||||||||||||||    
T  3368670 ggaacatgtccatgaaataagggttttcaaataagagagaccatgattt 3368718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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