View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1506_low_21 (Length: 256)
Name: NF1506_low_21
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1506_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 10724970 - 10725198
Alignment:
| Q |
11 |
aacacacctttgatctgaaatgtcggtgctacatagattaaaattcattttgtaatttaaatgctcaatgactacataattaaactaaagctggattttg |
110 |
Q |
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| T |
10724970 |
aacacacctttgatctgaaatgttggtgctacatagattaaaattcattttgtaatttaaatgctcaatgactacataattaaactaaagctggattttg |
10725069 |
T |
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| Q |
111 |
agagaaagatattagtcaatgcagtagtagaacttacttcaggttggtcagtttcttgtacgaggtttctcaaactccaatttgactgtttttcaaattt |
210 |
Q |
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| T |
10725070 |
agagaaagatattagtcaaagcagtagtagcacttacttcaggttggtcagtttcttgtacgaggtttctcaaactccaatttgactgtttttcaaattt |
10725169 |
T |
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| Q |
211 |
cttaaacagagactcttctacttctccac |
239 |
Q |
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| T |
10725170 |
cttaaacagagactcttctacttctccac |
10725198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 10730573 - 10730457
Alignment:
| Q |
18 |
ctttgatctgaaa-tgtcggtgctacatagattaaaattcattttgtaatttaaatgctcaatgactac----ataattaaactaaagctggattttgag |
112 |
Q |
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| T |
10730573 |
ctttgatctgaaagtgttggtgctatgtatattaaaatttattttgtaatttaaatgttcaatgactacgtatataataaaactaaagctggattttaat |
10730474 |
T |
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| Q |
113 |
agaaagatattagtcaa |
129 |
Q |
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| T |
10730473 |
agaaaaatattagtcaa |
10730457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 16199265 - 16199219
Alignment:
| Q |
1 |
acagacaccaaacacacctttgatctgaaatgtcggtgctacataga |
47 |
Q |
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| T |
16199265 |
acagacaccaaacaagcctttgatcagaaatgtcggtgctacataga |
16199219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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