View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1506_low_22 (Length: 251)
Name: NF1506_low_22
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1506_low_22 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 31938731 - 31938512
Alignment:
| Q |
18 |
attattgatcatgatttaatattcacatttcggtgatgattttgcaagatttgatttatctgataacaaaaatatatggcaaatgggaatgtttaaaaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31938731 |
attattgatcatgatttaatattcacatttcggtgatgattttgcaagatttgatttatctgataacaaaaaaatatggcaaatgggaatgtttaaaaac |
31938632 |
T |
|
| Q |
118 |
agtgattgattgaatgacacttcaactcctatactatttttcttgctaaattgaaagtattaagtttggtttaggaaaacagaacacaagctcttatttt |
217 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31938631 |
agtgtttgattgaatgacacttcaactcctatactatttttcttgttaaattgaaagtattaagattggtttaggaaaacagaacacaagctcttatttt |
31938532 |
T |
|
| Q |
218 |
tatgtcaggcctcgcctttg |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
31938531 |
tatgtcaggcctcgcctttg |
31938512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 1336766 - 1336668
Alignment:
| Q |
139 |
tcaactcctatactatttttcttgctaaattgaaagtattaagtttggtttaggaaaacagaacacaagctcttatttttatgtcaggcctcgcctttg |
237 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||| |
|
|
| T |
1336766 |
tcaattcctatactatttgtcttgttaaattgaaagtattaagtttggtttaggaaaacaaaacacaagctcatatttttacgtcaggccttgcctttg |
1336668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 1336864 - 1336816
Alignment:
| Q |
91 |
atatggcaaatgggaatgtttaaaaacagtgattgattgaatgacactt |
139 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| | |||||||| |
|
|
| T |
1336864 |
atatggcaaatggaaatgtttaaaaactatgattgatttactgacactt |
1336816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 9389087 - 9388971
Alignment:
| Q |
18 |
attattgatcatgatttaatattcacatttcggtgatgattttgcaagatttgatttatctgataacaaaaatatatggcaaatgggaatgttt-aaaaa |
116 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | |||||||||| | ||||||| ||||| |
|
|
| T |
9389087 |
attatttataatgatttaatattcacatttcggtgatgattttgcaag-----atttatctgaaaacaaaca-gtatggcaaatagaaatgtttgaaaaa |
9388994 |
T |
|
| Q |
117 |
cagtgattgattgaatgacactt |
139 |
Q |
| |
|
| |||||||||| |||||||||| |
|
|
| T |
9388993 |
ctgtgattgatttaatgacactt |
9388971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 5638983 - 5638949
Alignment:
| Q |
35 |
aatattcacatttcggtgatgattttgcaagattt |
69 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
5638983 |
aatattcacacttcggtgatgattttgcaagattt |
5638949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University