View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1506_low_26 (Length: 235)
Name: NF1506_low_26
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1506_low_26 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 29141856 - 29141636
Alignment:
| Q |
15 |
aaaaatcacaagtgcatgttacaaaatgataatgttgtaacacaacaatgatgagaacttgaagtgaaaagtacctaattgtcacaaagtacatatatct |
114 |
Q |
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| T |
29141856 |
aaaaatcacaagtgcatgttacaaaatgatactgttgtaacacaacaatgatgagaaattgaaatgaaaagtacctaattgtcacaaagtacatatatct |
29141757 |
T |
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| Q |
115 |
agtcttttttctcgcagtctttcaaatccaatacatctaagctcccccagcgtnnnnnnncactatagtccaaccgcatctcccttccaattccgaaaca |
214 |
Q |
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| T |
29141756 |
aatcttttttctcgcagtctttcaaatccaatacatctaagttcccccagcgtaaaaaaacgctatagtccaaccgcatctcccttccaattccgaaaca |
29141657 |
T |
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| Q |
215 |
gaatgactataactcaaacac |
235 |
Q |
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| T |
29141656 |
gaatgactataactcaaacac |
29141636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 155
Target Start/End: Complemental strand, 29014315 - 29014189
Alignment:
| Q |
29 |
catgttacaaaatgataatgttgtaacacaacaatgatgagaacttgaagtgaaaagtacct--aattgtcacaaagtacatatatctagtcttttttct |
126 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||| ||||||| |||||||||| | ||||||| |||||||||||||| |||| |||||| |
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| T |
29014315 |
catgttacaaaatgatacagttgtaacagaacaatgatgagaaattgaagtcaaaagtaccttaatttgtcacgaagtacatatatctggtctgttttct |
29014216 |
T |
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| Q |
127 |
cgcagtctttcaaatccaatacatctaag |
155 |
Q |
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| T |
29014215 |
cgcattcttcaaaatcc--tacatctaag |
29014189 |
T |
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