View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1506_low_28 (Length: 222)

Name: NF1506_low_28
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1506_low_28
NF1506_low_28
[»] chr3 (10 HSPs)
chr3 (9-210)||(4582485-4582686)
chr3 (22-210)||(5155194-5155382)
chr3 (119-210)||(4614258-4614350)
chr3 (20-147)||(46490021-46490148)
chr3 (83-210)||(46469616-46469743)
chr3 (11-170)||(46478256-46478415)
chr3 (101-204)||(51942034-51942137)
chr3 (15-204)||(16023879-16024068)
chr3 (17-97)||(47398309-47398389)
chr3 (9-65)||(47414945-47415001)
[»] chr4 (3 HSPs)
chr4 (18-204)||(35160451-35160637)
chr4 (50-204)||(35154060-35154214)
chr4 (50-202)||(15555004-15555156)
[»] chr8 (2 HSPs)
chr8 (17-195)||(9677631-9677809)
chr8 (50-204)||(9693405-9693559)
[»] chr2 (2 HSPs)
chr2 (50-210)||(20154350-20154510)
chr2 (17-210)||(20143445-20143638)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 4582485 - 4582686
Alignment:
Q  9 gagaagcaaaggagttgagatgatcagttgatttagagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgag 108  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4582485 gagaagcaaaggagttgagatgatcagttgatttggagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgag 4582584  T
Q  109 cgcaacttggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggttagtg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4582585 cgcaacttggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggttagtg 4582684  T
Q  209 at 210  Q
    ||    
T  4582685 at 4582686  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 5155382 - 5155194
Alignment:
Q  22 gttgagatgatcagttgatttagagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttggagc 121  Q
    ||||||||| ||||| ||||| || || ||||||||||||||||||| |  |||||| || ||||||||||||||||| ||||| ||  ||||||| ||     
T  5155382 gttgagatggtcagtggatttggacaggaggaagtcgagaagctgttgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 5155283  T
Q  122 gaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggttagtgat 210  Q
    || ||||| ||||||||||||||||| ||| |||||||  |||| |||| ||||||||| |  |||||||| ||||||||||| |||||    
T  5155282 gacagtggcgaaaacacaatgttcttgtctaattctttcaagaacagatgtttggcgatgcgtagggaaacatttgtttggttggtgat 5155194  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 4614258 - 4614350
Alignment:
Q  119 agcgaaagtggggaaaa-cacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggttagtgat 210  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||| ||||    
T  4614258 agcgaaagtggggaaaaacacaatgttcttctctgattcttttgagaaaagatgtttggcgattctgagggaaacttttgtctggttactgat 4614350  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 46490148 - 46490021
Alignment:
Q  20 gagttgagatgatcagttgatttagagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttgga 119  Q
    |||||||| ||||| || || |||||  | |||||||| |||||||||| |  |||||  |||||||||||||||||||| ||||||||  |||||||||    
T  46490148 gagttgagttgatcggtggagttagattggaggaagtcaagaagctgttgttgtgtggagccgtcagagccagcagcgatgatgctgagtacaacttgga 46490049  T
Q  120 gcgaaagtggggaaaacacaatgttctt 147  Q
    |||||||||| || ||||||||||||||    
T  46490048 gcgaaagtggcgataacacaatgttctt 46490021  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 46469743 - 46469616
Alignment:
Q  83 tcagagccagcagcgatcatgctgagcgcaacttggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattc 182  Q
    |||||| |||||||||  ||| |||||  ||||||||| || || || |||||||||| |||||| |||||||||||||||||||||| |||||| ||      
T  46469743 tcagaggcagcagcgacaatgttgagcataacttggagtgacagcggcgaaaacacaacgttcttgtctgattcttttgagaagagatgtttggccatgt 46469644  T
Q  183 tgagggaaacttttgtttggttagtgat 210  Q
    | ||||||||||| |||||||| |||||    
T  46469643 taagggaaactttggtttggttggtgat 46469616  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 46478415 - 46478256
Alignment:
Q  11 gaagcaaaggagttgagatgatcagttgatttagagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcg 110  Q
    ||||| ||| ||||||||||||| || ||||| ||  ||||||||| || ||| |||| |   ||||| || ||||| |||| |||||| || || |||     
T  46478415 gaagcgaagtagttgagatgatcggtggatttggattgaaggaagttgaaaagttgttgttgagtgggaccctcagaaccagaagcgattatacttagca 46478316  T
Q  111 caacttggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagat 170  Q
    |||||||||| |||||||| |||||||| ||||| || ||||||||||| ||||||||||    
T  46478315 caacttggagtgaaagtggagaaaacacgatgttgttgtctgattctttggagaagagat 46478256  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 51942137 - 51942034
Alignment:
Q  101 atgctgagcgcaacttggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgttt 200  Q
    ||||||||| ||||||| || || | ||| ||||| || ||||| || ||||||| ||||||||| | || ||||||||||||||||||||||  |||||    
T  51942137 atgctgagcacaacttgcagagacaatggcgaaaagacgatgttgttttctgattgttttgagaacaaatgtttggcgattctgagggaaactcgtgttt 51942038  T
Q  201 ggtt 204  Q
    ||||    
T  51942037 ggtt 51942034  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 16024068 - 16023879
Alignment:
Q  15 caaaggagttgagatgatcagttgatttagagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaac 114  Q
    ||||||||||||||| ||  || ||||  ||| | ||||||| ||||||||||| |  ||| ||||| || || ||||||||||| | ||||||  ||||    
T  16024068 caaaggagttgagattattggtagattcggagcggaggaagtggagaagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaac 16023969  T
Q  115 ttggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggtt 204  Q
    ||| || || || || |||||||  ||||| || ||||||| |||||| ||||||| |||| ||||  ||||||| || || ||||||||    
T  16023968 ttgaagtgatagcggagaaaacatgatgttattgtctgattgttttgaaaagagatgtttgacgatgttgagggatacgttggtttggtt 16023879  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 47398309 - 47398389
Alignment:
Q  17 aaggagttgagatgatcagttgatttagagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcg 97  Q
    |||||||||||||| ||||| || || ||   ||||||||||||||||| || |  |||||| || |||||||||||||||    
T  47398309 aaggagttgagatgttcagtggacttggacccaaggaagtcgagaagctcttgttgtgtgggaccctcagagccagcagcg 47398389  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 47414945 - 47415001
Alignment:
Q  9 gagaagcaaaggagttgagatgatcagttgatttagagagaaggaagtcgagaagct 65  Q
    |||| ||||||||||||||||||||| | ||||| |||   ||||||||||||||||    
T  47414945 gagaggcaaaggagttgagatgatcaatggattttgagccgaggaagtcgagaagct 47415001  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 35160637 - 35160451
Alignment:
Q  18 aggagttgagatgatcagttgatttagagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttg 117  Q
    ||||||||||||||||||| |||||  |  | |||||||| |||||||||| |  ||| |  || ||||||||||||| ||| ||||||||| |||||||    
T  35160637 aggagttgagatgatcagtggatttgaaacggaggaagtcaagaagctgttgttgtgttgaaccctcagagccagcagtgattatgctgagcacaacttg 35160538  T
Q  118 gagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggtt 204  Q
    ||| || | ||| |||||||| |||||||| ||||||||||| |||||||||| |||| | ||  |||| |||||||| ||||||||    
T  35160537 gagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttgacaatggtgagagaaactttcgtttggtt 35160451  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 204
Target Start/End: Complemental strand, 35154214 - 35154060
Alignment:
Q  50 aggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttggagcgaaagtggggaaaacacaatgttcttct 149  Q
    ||||||| ||||||||||| || |||||  |||||||||||||||||||| ||    ||| | |||||||| || |  || |||||||| || ||||| |    
T  35154214 aggaagttgagaagctgttgtcgtgtggaaccgtcagagccagcagcgatgattgcaagcactacttggagagacaaaggcgaaaacacgatattctttt 35154115  T
Q  150 ctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggtt 204  Q
    ||||||| |||||||| |||| |||||||||  ||||||||||||| || |||||    
T  35154114 ctgattcctttgagaaaagatgtttggcgatagtgagggaaactttcgtatggtt 35154060  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 202
Target Start/End: Complemental strand, 15555156 - 15555004
Alignment:
Q  50 aggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttggagcgaaagtggggaaaacacaatgttcttct 149  Q
    |||||||||||||| ||||    |||||  || ||||||||||||||||| ||||||||   |||||| | ||| || || |||||||||||||| || |    
T  15555156 aggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgatgatgctgagaataacttgaatcgagagaggtgaaaacacaatgttgttgt 15555057  T
Q  150 ctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttgg 202  Q
      | || ||| |||||||||| ||| |||||| |||| ||||| || ||||||    
T  15555056 tgggttgtttagagaagagatgtttagcgattttgagtgaaacgttggtttgg 15555004  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 9677631 - 9677809
Alignment:
Q  17 aaggagttgagatgatcagttgatttagagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaactt 116  Q
    |||||||||||||||||  | |||||  |  | ||||||||||||||||||| |   || || || ||||||||||||||||| || |||||  ||||||    
T  9677631 aaggagttgagatgatcgatggatttgaaacggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagcgatgatactgagaacaactt 9677730  T
Q  117 ggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttt 195  Q
    |||| || | ||| ||||| || | ||| || |||||||||||||||||||||| ||||||||   |||||||||||||    
T  9677731 ggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggcgaccgtgagggaaacttt 9677809  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 204
Target Start/End: Original strand, 9693405 - 9693559
Alignment:
Q  50 aggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttggagcgaaagtggggaaaacacaatgttcttct 149  Q
    |||||||| |||||||||| |   || || |||||||||||| ||||||| ||||||||  |||||||||| || | ||| ||||| || |  ||||| |    
T  9693405 aggaagtcaagaagctgttgttgagtaggaccgtcagagccaacagcgatgatgctgagaacaacttggagagacaatggtgaaaagacgacattcttgt 9693504  T
Q  150 ctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggtt 204  Q
    ||||||||||||||||||||| |||||||||  ||||||||| ||| | ||||||    
T  9693505 ctgattcttttgagaagagatgtttggcgatggtgagggaaaatttcgcttggtt 9693559  T

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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 20154510 - 20154350
Alignment:
Q  50 aggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttggagcgaaagtggggaaaacacaatgttcttct 149  Q
    |||||||||| |||||||| |  |||||| || ||||||||||||||| | | ||||| | |||||||||| || | ||| ||||||||||||||||| |    
T  20154510 aggaagtcgacaagctgttgttgtgtgggaccttcagagccagcagcggtgaggctgaacacaacttggagtgacactggcgaaaacacaatgttcttgt 20154411  T
Q  150 ctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggttagtgat 210  Q
    |||||| |||  |||| |||| |||||||||   |||| |||| ||| ||||||| |||||    
T  20154410 ctgattgtttcaagaacagatgtttggcgatgtcgaggaaaacctttatttggttggtgat 20154350  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 20143638 - 20143445
Alignment:
Q  17 aaggagttgagatgatcagttgatttagagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaactt 116  Q
    |||||||| |||||||  || |||||  || | |||||||||| ||| |||| |  ||||||  | ||||| ||||||||||| | ||||||| ||| ||    
T  20143638 aaggagttaagatgattggtggatttgaagcggaggaagtcgacaagttgttgttgtgtgggatcttcagaaccagcagcgataaggctgagcacaattt 20143539  T
Q  117 ggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggttagtgat 210  Q
    |||| || ||||| |||||||| |||||||| ||||||| |||  | || |||| | |||||||   ||||||||| |||||||||||||||||    
T  20143538 ggagtgatagtggcgaaaacacgatgttcttgtctgattgtttcaacaacagatgtctggcgatgtcgagggaaacctttgtttggttagtgat 20143445  T

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