View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1506_low_3 (Length: 536)

Name: NF1506_low_3
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1506_low_3
NF1506_low_3
[»] scaffold0035 (1 HSPs)
scaffold0035 (11-120)||(35084-35193)
[»] chr6 (8 HSPs)
chr6 (11-120)||(33045422-33045531)
chr6 (12-120)||(10092533-10092641)
chr6 (11-120)||(8976425-8976534)
chr6 (29-120)||(3065719-3065809)
chr6 (65-120)||(30908414-30908469)
chr6 (65-116)||(16246727-16246778)
chr6 (66-120)||(4660222-4660275)
chr6 (347-436)||(33568954-33569043)
[»] chr5 (7 HSPs)
chr5 (11-120)||(22009519-22009628)
chr5 (11-120)||(9043823-9043932)
chr5 (11-120)||(30442538-30442647)
chr5 (11-120)||(7473480-7473589)
chr5 (56-120)||(26841000-26841064)
chr5 (65-120)||(19085422-19085477)
chr5 (11-120)||(22004448-22004556)
[»] chr3 (11 HSPs)
chr3 (11-118)||(31685100-31685207)
chr3 (11-120)||(17681788-17681896)
chr3 (12-120)||(37982370-37982478)
chr3 (11-120)||(19882102-19882211)
chr3 (11-120)||(53973277-53973386)
chr3 (11-118)||(2549960-2550066)
chr3 (11-120)||(12538627-12538735)
chr3 (11-118)||(24761889-24761996)
chr3 (11-118)||(24815938-24816045)
chr3 (11-118)||(53352752-53352859)
chr3 (11-118)||(53027743-53027850)
[»] scaffold0096 (1 HSPs)
scaffold0096 (11-120)||(27431-27539)
[»] scaffold0045 (1 HSPs)
scaffold0045 (11-120)||(11625-11734)
[»] chr8 (6 HSPs)
chr8 (11-120)||(5657792-5657901)
chr8 (11-120)||(14678012-14678121)
chr8 (11-120)||(31100863-31100972)
chr8 (11-120)||(27541550-27541658)
chr8 (66-118)||(24788079-24788131)
chr8 (66-120)||(23738678-23738731)
[»] chr7 (16 HSPs)
chr7 (11-120)||(1262109-1262218)
chr7 (11-120)||(43071373-43071482)
chr7 (11-120)||(48849798-48849907)
chr7 (11-120)||(26909972-26910081)
chr7 (286-449)||(26256684-26256847)
chr7 (292-450)||(15443879-15444037)
chr7 (383-450)||(26230223-26230290)
chr7 (292-450)||(15508661-15508819)
chr7 (383-450)||(26237620-26237687)
chr7 (383-449)||(26217973-26218039)
chr7 (349-450)||(24016760-24016861)
chr7 (65-120)||(22007361-22007416)
chr7 (371-450)||(23993529-23993608)
chr7 (359-446)||(24002181-24002268)
chr7 (369-447)||(24035743-24035821)
chr7 (359-446)||(24010365-24010452)
[»] chr2 (6 HSPs)
chr2 (11-120)||(23348971-23349080)
chr2 (11-120)||(12741709-12741818)
chr2 (12-120)||(18355305-18355413)
chr2 (12-120)||(10328884-10328992)
chr2 (11-120)||(1615906-1616014)
chr2 (380-444)||(5436824-5436888)
[»] scaffold0596 (1 HSPs)
scaffold0596 (11-120)||(675-784)
[»] chr4 (7 HSPs)
chr4 (11-120)||(29863352-29863461)
chr4 (346-446)||(8443455-8443555)
chr4 (66-120)||(24260241-24260294)
chr4 (386-447)||(6392833-6392894)
chr4 (80-120)||(12506457-12506497)
chr4 (344-436)||(23840642-23840734)
chr4 (342-446)||(3565709-3565813)
[»] chr1 (2 HSPs)
chr1 (286-417)||(17953691-17953822)
chr1 (65-120)||(50990928-50990983)
[»] scaffold0475 (1 HSPs)
scaffold0475 (66-120)||(7520-7573)
[»] scaffold0157 (1 HSPs)
scaffold0157 (80-120)||(13980-14020)
[»] scaffold0707 (1 HSPs)
scaffold0707 (347-436)||(5348-5437)


Alignment Details
Target: scaffold0035 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 35193 - 35084
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35193 caaaggatgagatgcatgcttagccaaatgatgagatccaacaacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 35094  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  35093 aatgttaaca 35084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 33045422 - 33045531
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  33045422 caaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttattttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 33045521  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  33045522 aatgttaaca 33045531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 10092641 - 10092533
Alignment:
Q  12 aaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagca 111  Q
    |||| |||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||    
T  10092641 aaagaatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagggtttgcaaagtcattaaca 10092542  T
Q  112 atgttaaca 120  Q
    |||||||||    
T  10092541 atgttaaca 10092533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 8976534 - 8976425
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||| ||| | |||| ||||||| |||| | ||||||| |||||||||||||||||||||||||||| ||||| ||| ||||||||    
T  8976534 caaaggatgagatgcatgtttagctaaataatgagatccaacggtctcccttattttggagccaaaaccatttaggtttagagtttgtaaagtcattagc 8976435  T
Q  111 aatgttaaca 120  Q
    ||| ||||||    
T  8976434 aatattaaca 8976425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 3065809 - 3065719
Alignment:
Q  29 cttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaaca 120  Q
    |||| |||||||||||||| |||| | ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  3065809 cttagccaaatgatgagatccaacggtctcccttgttt-ggagccaaaaccatttaggtttagggtttgcaaagtcattagccatgttaaca 3065719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 30908414 - 30908469
Alignment:
Q  65 tttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaaca 120  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  30908414 tttggagccaaaaccatttagatttagggtttgcaaagtcattagcaatgttaaca 30908469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 16246778 - 16246727
Alignment:
Q  65 tttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgtt 116  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  16246778 tttggagccaaaaccatttaggattagggtttgcaaagtcattagcaatgtt 16246727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 4660222 - 4660275
Alignment:
Q  66 ttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaaca 120  Q
    |||||||||||| | |||||| |||||||||||||| ||||||||||||||||||    
T  4660222 ttggagccaaaaac-tttagggttagggtttgcaaagtcattagcaatgttaaca 4660275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 436
Target Start/End: Original strand, 33568954 - 33569043
Alignment:
Q  347 tttgtttttcgtatgatttcaggaaaaccgaatttattttatggcagatgaaagagtatagagttcacgagtcttggaatcaattattta 436  Q
    ||||||||||| | ||||||| ||  || |||||| |  ||||| ||||||| |||| | |||||||||||||||||| ||| |||||||    
T  33568954 tttgtttttcgcacgatttcaagaggactgaatttgtcatatggaagatgaatgagtttggagttcacgagtcttggagtcagttattta 33569043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 22009519 - 22009628
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22009519 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaattcattagc 22009618  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  22009619 aatgttaaca 22009628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 9043932 - 9043823
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  9043932 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagc 9043833  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  9043832 aatgttaaca 9043823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 30442538 - 30442647
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  30442538 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagc 30442637  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  30442638 aatgttaaca 30442647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 7473480 - 7473589
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| | |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  7473480 caaaggatgagatgcatgcttagctaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagc 7473579  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  7473580 aatgttaaca 7473589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 26841000 - 26841064
Alignment:
Q  56 ctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaaca 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26841000 ctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaaca 26841064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 19085422 - 19085477
Alignment:
Q  65 tttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaaca 120  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19085422 tttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaaca 19085477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 22004448 - 22004556
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||| ||| ||||| | |||||||||||||| |||| | |  ||||| || || ||| |||| || ||||||||||||||||||||||||||||    
T  22004448 caaaggatgatatgaatgctgagccaaatgatgagatccaacggaccaccttgatt-ggcgcctaaactatctaggtttagggtttgcaaaatcattagc 22004546  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  22004547 aatgttaaca 22004556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 31685207 - 31685100
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  31685207 caaaggatgagatgcatgcttagccaaatgatgagattcaacggcctcccttattttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 31685108  T
Q  111 aatgttaa 118  Q
    ||||||||    
T  31685107 aatgttaa 31685100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 17681896 - 17681788
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  17681896 caaaggatgagatgcatgcttaaccaaatgatgagatccaacggccccccttgttt-ggagccaaaaccatttaggtttagggtttgcaaaatcattaac 17681798  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  17681797 aatgttaaca 17681788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 37982478 - 37982370
Alignment:
Q  12 aaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagca 111  Q
    ||||||||||||||||||||| |||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  37982478 aaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagca 37982379  T
Q  112 atgttaaca 120  Q
    |||||||||    
T  37982378 atgttaaca 37982370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 19882102 - 19882211
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||    
T  19882102 caaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttacaatttcattagc 19882201  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  19882202 aatgttaaca 19882211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 53973277 - 53973386
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||| ||||| |||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  53973277 caaaggatgagatgcaggcttagccaaatgatgagatccaacggcctcccttgatttggagccaaaaccatttaggtttagggtttgcaatttcattagc 53973376  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  53973377 aatgttaaca 53973386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 2550066 - 2549960
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| ||||||||| |||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  2550066 caaaggatgagatgcatgcttagccaaatgat-agatccaacggcctcccttgttttggagccaaaatcatttaggtttagggtttgcaaagtcattagc 2549968  T
Q  111 aatgttaa 118  Q
    ||||||||    
T  2549967 aatgttaa 2549960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 12538627 - 12538735
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    ||||||||| |||||||||||| |||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  12538627 caaaggatgtgatgcatgcttagccaaatgatgagatccaacggcctcccttgttt-ggagccaaaaccatttaggtttagggtttgcaaaatcattaga 12538725  T
Q  111 aatgttaaca 120  Q
    || |||||||    
T  12538726 aaggttaaca 12538735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 24761889 - 24761996
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||| | |||||||||||||| |||| | |  | ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24761889 caaaggatgagatgcatgctgagccaaatgatgagatccaacggtcagcattgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 24761988  T
Q  111 aatgttaa 118  Q
    ||||||||    
T  24761989 aatgttaa 24761996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 24816045 - 24815938
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||| | |||||||||||||| |||| |||  | | ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24816045 caaaggatgagatgcatgctgagccaaatgatgagatccaacggccagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 24815946  T
Q  111 aatgttaa 118  Q
    ||||||||    
T  24815945 aatgttaa 24815938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 53352752 - 53352859
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    ||||||||||||||||  || | |||||||||||||| |||| | |  | | ||||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  53352752 caaaggatgagatgcacactgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccgtttaggtttagagtttgcaaagtcattagc 53352851  T
Q  111 aatgttaa 118  Q
    ||||||||    
T  53352852 aatgttaa 53352859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 53027743 - 53027850
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||| | |||||||||||||| |||| | |  | |  |||||||| ||||||||||||||||||||||||| ||| | ||||||    
T  53027743 caaaggatgagatgcatgctgagccaaatgatgagatccaacggtcagcatcattttggagtcaaaaccatttaggtttagggtttgtaaagttattagc 53027842  T
Q  111 aatgttaa 118  Q
    | ||||||    
T  53027843 agtgttaa 53027850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 27539 - 27431
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27539 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttt-ggagccaaaaccatttaggtttagggtttgcaaaatcattagc 27441  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  27440 aatgttaaca 27431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 11625 - 11734
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  11625 caaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttttggagtcaaaaccagttaggtttagggtttgcaaagtcattagc 11724  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  11725 aatgttaaca 11734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 5657901 - 5657792
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  5657901 caaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttttggagccaaaactatttaggtttagggtttgcaaagtcattagc 5657802  T
Q  111 aatgttaaca 120  Q
    || |||||||    
T  5657801 aacgttaaca 5657792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 14678012 - 14678121
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  14678012 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggttttcaaagtcattagc 14678111  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  14678112 aatgttaaca 14678121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 31100863 - 31100972
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    ||||||||||||| |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  31100863 caaaggatgagatacatgcttaaccaaatgatgagatcgaacggcctcccttgttttggagccaaaaccatttaggtttaggatttgcaaagtcattagc 31100962  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  31100963 aatgttaaca 31100972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 27541550 - 27541658
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| |||||||||||||| |||| || |||||||||| ||||||||| |||||||||||||||||||||||| ||||||||    
T  27541550 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcgtcccttgttt-ggagccaaagccatttaggtttagggtttgcaaagtcattagc 27541648  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  27541649 aatgttaaca 27541658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 24788079 - 24788131
Alignment:
Q  66 ttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaa 118  Q
    |||| |||||||| | |||||||||||||||||||| ||||||||||||||||    
T  24788079 ttggcgccaaaactaattaggtttagggtttgcaaagtcattagcaatgttaa 24788131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 23738731 - 23738678
Alignment:
Q  66 ttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaaca 120  Q
    |||||||||||| | |||||| |||||||||||||| ||||||||||||||||||    
T  23738731 ttggagccaaaaac-tttagggttagggtttgcaaagtcattagcaatgttaaca 23738678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 1262218 - 1262109
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| |||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1262218 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcttcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 1262119  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  1262118 aatgttaaca 1262109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 43071373 - 43071482
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  43071373 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagc 43071472  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  43071473 aatgttaaca 43071482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 48849798 - 48849907
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| |||||||||||||| |||||   |||||||||||||||||||||||||||||||||||| ||| |||| ||||||||    
T  48849798 caaaggatgagatgcatgcttagccaaatgatgagatccaacaaaatcccttgttttggagccaaaaccatttaggtttaggatttacaaagtcattagc 48849897  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  48849898 aatgttaaca 48849907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 26909972 - 26910081
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| ||||||||| |||| |||  | ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||    
T  26909972 caaaggatgagatgcatgcttagccaaatgataagatccaatggtctcccttgttttggagccaaatccatttaggtttagggtttgcaaagttattagc 26910071  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  26910072 aatgttaaca 26910081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 286 - 449
Target Start/End: Original strand, 26256684 - 26256847
Alignment:
Q  286 cctcaaggttttgacgaggtgccatttgatgagccagttcttagtgttctaacgggctgcctttgtttttcgtatgatttcaggaaaaccgaatttattt 385  Q
    |||||||||||||| ||||||||||||| | ||||||||||||  ||| | | ||  ||||||||||||||  |||||  || | |||  || ||| |||    
T  26256684 cctcaaggttttgatgaggtgccatttgttcagccagttcttaaggttttgatggaatgcctttgtttttctcatgataccaaggaaaatgattttgttt 26256783  T
Q  386 tatggcagatgaaagagtatagagttcacgagtcttggaatcaattatttaagattagttacca 449  Q
    ||||||||||||| |||||| ||||||| |||||||||| |||||||||||||||||| |||||    
T  26256784 tatggcagatgaaggagtatggagttcaagagtcttggactcaattatttaagattagctacca 26256847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 292 - 450
Target Start/End: Original strand, 15443879 - 15444037
Alignment:
Q  292 ggttttgacgaggtgccatttgatgagccagttcttagtgttctaacgggctgcctttgtttttcgtatgatttcaggaaaaccgaatttattttatggc 391  Q
    |||||| | ||||||||||||  ||||||||||||||| ||||| | ||  || ||||||||||| ||||||| ||  | ||| | |||| |||||||||    
T  15443879 ggttttaatgaggtgccatttcttgagccagttcttagggttctgatggattgtctttgtttttcttatgattccaatacaactggatttgttttatggc 15443978  T
Q  392 agatgaaagagtatagagttcacgagtcttggaatcaattatttaagattagttaccag 450  Q
    | ||||| |||||| ||||| | |||||||||| ||||||||||||||| |||||||||    
T  15443979 atatgaaggagtatggagttgaagagtcttggactcaattatttaagatgagttaccag 15444037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 383 - 450
Target Start/End: Original strand, 26230223 - 26230290
Alignment:
Q  383 ttttatggcagatgaaagagtatagagttcacgagtcttggaatcaattatttaagattagttaccag 450  Q
    ||||||||||||||||||||||| ||||||| |||||||||  |||||||||||||||||||||||||    
T  26230223 ttttatggcagatgaaagagtatggagttcaagagtcttggtctcaattatttaagattagttaccag 26230290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 292 - 450
Target Start/End: Original strand, 15508661 - 15508819
Alignment:
Q  292 ggttttgacgaggtgccatttgatgagccagttcttagtgttctaacgggctgcctttgtttttcgtatgatttcaggaaaaccgaatttattttatggc 391  Q
    |||||| | ||||||||||||  ||||||||||||||| ||||| | ||  || ||||||||||| ||||||| ||  ||||| | |||| |||| ||||    
T  15508661 ggttttaatgaggtgccatttcttgagccagttcttagggttctgatggattgtctttgtttttcttatgattccaataaaactggatttgttttttggc 15508760  T
Q  392 agatgaaagagtatagagttcacgagtcttggaatcaattatttaagattagttaccag 450  Q
    | ||||| |||||| ||||| |  ||||| ||| ||||||||||||||| |||||||||    
T  15508761 atatgaaggagtatggagttgaatagtctaggactcaattatttaagatgagttaccag 15508819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 383 - 450
Target Start/End: Original strand, 26237620 - 26237687
Alignment:
Q  383 ttttatggcagatgaaagagtatagagttcacgagtcttggaatcaattatttaagattagttaccag 450  Q
    ||||||||||||||||||||||| || |||| |||||||||  |||||||||||||||||||||||||    
T  26237620 ttttatggcagatgaaagagtatggatttcatgagtcttggtctcaattatttaagattagttaccag 26237687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 383 - 449
Target Start/End: Original strand, 26217973 - 26218039
Alignment:
Q  383 ttttatggcagatgaaagagtatagagttcacgagtcttggaatcaattatttaagattagttacca 449  Q
    |||||||||||||||| |||||| ||||||| |||||||||  ||||||||||||||||||||||||    
T  26217973 ttttatggcagatgaaggagtatggagttcaagagtcttggtctcaattatttaagattagttacca 26218039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 450
Target Start/End: Original strand, 24016760 - 24016861
Alignment:
Q  349 tgtttttcgtatgatttcaggaaaaccgaatttattttatggcagatgaaagagtatagagttcacgagtcttggaatcaattatttaagattagttacc 448  Q
    ||||||||  ||||||||| |||||  |||||| |||||||||||||||| |||||| |  |||| |||||||||| | ||||||||||||| |||||||    
T  24016760 tgtttttctcatgatttcaagaaaagtgaatttgttttatggcagatgaaggagtatgggtttcaagagtcttggactaaattatttaagatcagttacc 24016859  T
Q  449 ag 450  Q
    ||    
T  24016860 ag 24016861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 22007416 - 22007361
Alignment:
Q  65 tttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaaca 120  Q
    ||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  22007416 tttggagccaaaaccatttagatttagggtttgtaaagtcattagcaatgttaaca 22007361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 371 - 450
Target Start/End: Original strand, 23993529 - 23993608
Alignment:
Q  371 aaaccgaatttattttatggcagatgaaagagtatagagttcacgagtcttggaatcaattatttaagattagttaccag 450  Q
    |||| |||||| |||||||||| ||||| |||||  | ||||| |||||||||| |||||||||||||||||||||||||    
T  23993529 aaactgaatttgttttatggcatatgaaggagtacggggttcaagagtcttggactcaattatttaagattagttaccag 23993608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 446
Target Start/End: Original strand, 24002181 - 24002268
Alignment:
Q  359 atgatttcaggaaaaccgaatttattttatggcagatgaaagagtatagagttcacgagtcttggaatcaattatttaagattagtta 446  Q
    |||||| || || ||| |||||| |||||||||| ||||| |||||  ||||||| |||||||||| ||||||| |||||||||||||    
T  24002181 atgattccaagagaactgaatttgttttatggcatatgaaggagtacggagttcaagagtcttggactcaattacttaagattagtta 24002268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 369 - 447
Target Start/End: Original strand, 24035743 - 24035821
Alignment:
Q  369 gaaaaccgaatttattttatggcagatgaaagagtatagagttcacgagtcttggaatcaattatttaagattagttac 447  Q
    |||||| |||||  |||||||||| ||||| |||||  | ||||| |||||||||| ||||||||||||||||||||||    
T  24035743 gaaaactgaattggttttatggcaaatgaaggagtacggcgttcaagagtcttggactcaattatttaagattagttac 24035821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 446
Target Start/End: Original strand, 24010365 - 24010452
Alignment:
Q  359 atgatttcaggaaaaccgaatttattttatggcagatgaaagagtatagagttcacgagtcttggaatcaattatttaagattagtta 446  Q
    |||||| || || ||| |||||| |||||||||| ||||| |||||  | ||||| |||||||||| ||||||| |||||||||||||    
T  24010365 atgattccaagagaactgaatttgttttatggcatatgaaggagtacggggttcaagagtcttggactcaattacttaagattagtta 24010452  T

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Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 23348971 - 23349080
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  23348971 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagc 23349070  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  23349071 aatgttaaca 23349080  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 12741818 - 12741709
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  12741818 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcctttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagc 12741719  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  12741718 aatgttaaca 12741709  T

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Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 18355305 - 18355413
Alignment:
Q  12 aaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagca 111  Q
    ||||||||||||||||||||| |||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  18355305 aaaggatgagatgcatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagca 18355404  T
Q  112 atgttaaca 120  Q
    |||||||||    
T  18355405 atgttaaca 18355413  T

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Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 10328884 - 10328992
Alignment:
Q  12 aaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagca 111  Q
    ||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| || ||||||| |||||||||||||||||||||  |||||||||    
T  10328884 aaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttagaaccaaaacaatttaggtttagggtttgcaatttcattagca 10328983  T
Q  112 atgttaaca 120  Q
    |||||||||    
T  10328984 atgttaaca 10328992  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 1615906 - 1616014
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| |||||||||| ||| ||||   |||||||| |||||||| |||||||||||| ||||  | || |||| |||||| |    
T  1615906 caaaggatgagatgcatgcttagccaaatgatgcgatccaacgatctcccttg-tttggagcaaaaaccatttagatttaatggttacaaagtcattaac 1616004  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  1616005 aatgttaaca 1616014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 5436888 - 5436824
Alignment:
Q  380 ttattttatggcagatgaaagagtatagagttcacgagtcttggaatcaattatttaagattagt 444  Q
    ||||| |||||||||||| | | ||| ||||| | |||||||||||||||||||| || ||||||    
T  5436888 ttattatatggcagatgacaaaatatggagttgaggagtcttggaatcaattattaaaaattagt 5436824  T

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Target: scaffold0596 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 784 - 675
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||||| |||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||||||||||  ||||||||    
T  784 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttattttggagtcaaaaccatttaggtttagggtttgcaatttcattagc 685  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  684 aatgttaaca 675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 29863352 - 29863461
Alignment:
Q  11 caaaggatgagatgcatgcttaaccaaatgatgagattcaacagcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagc 110  Q
    |||||||||||||||||||| | |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||    
T  29863352 caaaggatgagatgcatgctcagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttacggtttgcaaagtcatgagc 29863451  T
Q  111 aatgttaaca 120  Q
    ||||||||||    
T  29863452 aatgttaaca 29863461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 446
Target Start/End: Complemental strand, 8443555 - 8443455
Alignment:
Q  346 ctttgtttttcgtatgatttcaggaaaaccgaatttattttatggcagatgaaagagtatagagttcacgagtcttggaatcaattatttaagattagtt 445  Q
    ||||||||||| |||||||||| || |||  | | | || | ||||||||||| || | | |||||||||||||||||| |||||||||||| |||||||    
T  8443555 ctttgtttttcttatgatttcaagagaactcattatgttatttggcagatgaaggattttggagttcacgagtcttggattcaattatttaaaattagtt 8443456  T
Q  446 a 446  Q
    |    
T  8443455 a 8443455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 24260294 - 24260241
Alignment:
Q  66 ttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaaca 120  Q
    |||||||||||| | |||||| |||||||||||||| ||||||||||||||||||    
T  24260294 ttggagccaaaaac-tttagggttagggtttgcaaagtcattagcaatgttaaca 24260241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 447
Target Start/End: Original strand, 6392833 - 6392894
Alignment:
Q  386 tatggcagatgaaagagtatagagttcacgagtcttggaatcaattatttaagattagttac 447  Q
    ||||||| ||||| || | | |||||||||||||||||| |||||||||||| |||||||||    
T  6392833 tatggcaaatgaaggattttggagttcacgagtcttggattcaattatttaaaattagttac 6392894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 12506497 - 12506457
Alignment:
Q  80 atttaggtttagggtttgcaaaatcattagcaatgttaaca 120  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  12506497 atttaggtttaggatttgcaaagtcattagcaatgttaaca 12506457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 436
Target Start/End: Original strand, 23840642 - 23840734
Alignment:
Q  344 gcctttgtttttcgtatgatttcaggaaaaccgaatttattttatggcagatgaaagagtatagagttcacgagtcttggaatcaattattta 436  Q
    ||||||| |||||| ||||||||| |||||| |||||| || |||| || | |||| ||| | | ||||| |||||||||| |||||||||||    
T  23840642 gcctttgcttttcgcatgatttcaagaaaactgaatttgttatatgacaaaggaaatagtttggggttcaggagtcttggactcaattattta 23840734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 446
Target Start/End: Original strand, 3565709 - 3565813
Alignment:
Q  342 ctgcctttgtttttcgtatgatttcaggaaaaccgaatttattttatggcagatgaaagagtatagagttcacgagtcttggaatcaattatttaagatt 441  Q
    ||||||||||||||| |||  ||  | ||||||||| |||||| ||||||||||||| || | | | ||| | |||||||||| ||||||  |||| |||    
T  3565709 ctgcctttgtttttcttattgttataagaaaaccgattttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaatt 3565808  T
Q  442 agtta 446  Q
    |||||    
T  3565809 agtta 3565813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 286 - 417
Target Start/End: Complemental strand, 17953822 - 17953691
Alignment:
Q  286 cctcaaggttttgacgaggtgccatttgat-gagccagttcttagtgttctaacgggctgcctttgtttttcgtatgatttcaggaaaaccgaatttatt 384  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||||| | | |||||||||||||||||||||||||||||| ||||| |||||| ||    
T  17953822 cctcaaggttttgatgaggtgccatt-gatagagccagttcttagtgttttgatgggctgcctttgtttttcgtatgatttcagaaaaactgaatttgtt 17953724  T
Q  385 ttatggcagatgaaagagtatagagttcacgag 417  Q
    ||||||||||||||||||||| | |||||||||    
T  17953723 ttatggcagatgaaagagtatggggttcacgag 17953691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 50990983 - 50990928
Alignment:
Q  65 tttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaaca 120  Q
    ||||||||||||||||||||||||||||||||||||| | || |||||||||||||    
T  50990983 tttggagccaaaaccatttaggtttagggtttgcaaagttatcagcaatgttaaca 50990928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 7520 - 7573
Alignment:
Q  66 ttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaaca 120  Q
    |||||||||||| | |||||| |||||||||||||| ||||||||||||||||||    
T  7520 ttggagccaaaaac-tttagggttagggtttgcaaagtcattagcaatgttaaca 7573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 13980 - 14020
Alignment:
Q  80 atttaggtttagggtttgcaaaatcattagcaatgttaaca 120  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  13980 atttaggtttaggatttgcaaagtcattagcaatgttaaca 14020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 436
Target Start/End: Original strand, 5348 - 5437
Alignment:
Q  347 tttgtttttcgtatgatttcaggaaaaccgaatttattttatggcagatgaaagagtatagagttcacgagtcttggaatcaattattta 436  Q
    ||||||||||| | ||||||| ||  || |||||| |  ||||| ||||||| |||| | |||||||||||||||||| ||| |||||||    
T  5348 tttgtttttcgcacgatttcaagaggactgaatttgtcatatggaagatgaatgagtttggagttcacgagtcttggagtcagttattta 5437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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