View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1506_low_31 (Length: 213)
Name: NF1506_low_31
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1506_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 1256235 - 1256049
Alignment:
| Q |
16 |
acaaatcaccttcactaacataagaaaaagattcatcttcaccatcattctccttaagctcttcaatcttatccaaagcttctttccaatcccatcttct |
115 |
Q |
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| T |
1256235 |
acaaatcaccttcactaacataagaaaaagattcatcttcaccatcattctccttaagctcttcaatcttatccaaagcttctttccaatcccatcttct |
1256136 |
T |
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| Q |
116 |
ctcaacactccactcacaacaatacattccaatcctcaaaagcttcaacatctcaccttcaccatttcttgtccccattatattctt |
202 |
Q |
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| T |
1256135 |
ctcaacactccattcacaacagtacattccaatcctcaaaagcttcaacatctcaccttcaccatttcttgtccccattatattctt |
1256049 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 36126203 - 36126150
Alignment:
| Q |
122 |
actccactcacaacaatacattccaatcctcaaaagcttcaacatctcaccttc |
175 |
Q |
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| T |
36126203 |
actccattcacaacaactcattccaatcctcaacagcttcaacatctcaccttc |
36126150 |
T |
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