View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1506_low_4 (Length: 514)
Name: NF1506_low_4
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1506_low_4 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0049 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 12 - 514
Target Start/End: Complemental strand, 43433507 - 43433005
Alignment:
| Q |
12 |
atgaacaattttgggtgatcggcggtgtgtctgcgcatttattggccgtgtttcaaggtctagtaaaagtagtattcagagtcgacacaaacttcacagt |
111 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43433507 |
atgaacaattttgggtgatcggtggtgtgtctgcacatttattggccgtgtttcaaggtctagtaaaagtagtattcagagtcgacacaaacttcacagt |
43433408 |
T |
|
| Q |
112 |
gacctcaaaagcatcagatgaaaacggagactctgcagaactgtacaagatcaaatggacatttcttctggttcctccaacgacacttttcatatttaac |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43433407 |
gacctcaaaagcatcagatgaaaacggagactctgcagaactgtacaagatcaaatggacatttcttctggttcctccaacgacacttttcatatttaac |
43433308 |
T |
|
| Q |
212 |
ttgataggagttgttgctggtgtatcatatgctgtgaacgctggttaccgatcatctggtccgatctttggtaaacttttctttgcgttttgggtaatca |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43433307 |
ttgataggagttgttgctggtgtatcatatgctgtgaatgctggttaccgatcatctggtccgatctttggtaaacttttctttgcgttttgggtaatca |
43433208 |
T |
|
| Q |
312 |
ttcatctcttccctttccttaaaggtcttatgggacgcaagaatcgaataccaaccattgttgtgttctggtcgatcatgcttgcaactgttttatctgt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43433207 |
ttcatctcttccctttccttaaaggtcttatgggacgcaagaatcgaataccaaccattgttgtgttctggtcgatcatgcttgcaactgttttatctgt |
43433108 |
T |
|
| Q |
412 |
gttatgggttcgtcttgatccgtttaccacaaaagtcattggtcctaaagctgagaagtgtggaattggatgctagaacaatcataggcttggtgttttg |
511 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43433107 |
gttatgggttcgtcttgatccgtttaccacaagagtcattggtcctaaagctgagaagtgtggaattggatgctagaacaatcataggcttggtgttttg |
43433008 |
T |
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| Q |
512 |
gat |
514 |
Q |
| |
|
||| |
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| T |
43433007 |
gat |
43433005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 14 - 478
Target Start/End: Complemental strand, 13822903 - 13822439
Alignment:
| Q |
14 |
gaacaattttgggtgatcggcggtgtgtctgcgcatttattggccgtgtttcaaggtctagtaaaagtagtattcagagtcgacacaaacttcacagtga |
113 |
Q |
| |
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||||| |||||||| ||||| |||||||| || ||| | || |||||||| ||||||||| |||||||| | || |||||||||||||||| || | |
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| T |
13822903 |
gaacagttttgggttatcggtggtgtgtcagcacatcttttcgccgtgttccaaggtctactaaaagtacttgctggaatcgacacaaacttcaccgtca |
13822804 |
T |
|
| Q |
114 |
cctcaaaagcatcagatgaaaacggagactctgcagaactgtacaagatcaaatggacatttcttctggttcctccaacgacacttttcatatttaactt |
213 |
Q |
| |
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|||| ||||||||||||||| |||||||||| |||||||| |||| ||| ||||||||| ||||| |||||||||| || ||| | ||| | ||||| |
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| T |
13822803 |
cctccaaagcatcagatgaagacggagactccgcagaactttacatgattaaatggacaacacttctcattcctccaacaacgcttcttataataaactt |
13822704 |
T |
|
| Q |
214 |
gataggagttgttgctggtgtatcatatgctgtgaacgctggttaccgatcatctggtccgatctttggtaaacttttctttgcgttttgggtaatcatt |
313 |
Q |
| |
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| ||||||||||||||||| |||| |||||| | || |||||||| ||||| ||||| |||||||||||||||||||||| |||||||| ||| || |
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| T |
13822703 |
ggtaggagttgttgctggtatatcttatgctatcaatagtggttaccaatcatggggtccactctttggtaaacttttctttgcattttgggttatcgtt |
13822604 |
T |
|
| Q |
314 |
catctcttccctttccttaaaggtcttatgggacgcaagaatcgaataccaaccattgttgtgttctggtcgatcatgcttgcaactgttttatctgtgt |
413 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| | |||||| | |||| ||| | | |
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| T |
13822603 |
catctctaccctttccttaaaggtcttatgggacgccagaatcgaacgccaaccattgttgtggtctggtcgattcttcttgcatccattttctctctat |
13822504 |
T |
|
| Q |
414 |
tatgggttcgtcttgatccgtttaccacaaaagtcattggtcctaaagctgagaagtgtggaatt |
478 |
Q |
| |
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|||||||||| ||||||||||||| |||| ||||| |||||||||||||||| ||||||||||| |
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| T |
13822503 |
tatgggttcgagttgatccgtttactacaagagtcactggtcctaaagctgaggagtgtggaatt |
13822439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 12 - 478
Target Start/End: Original strand, 16735259 - 16735719
Alignment:
| Q |
12 |
atgaacaattttgggtgatcggcggtgtgtctgcgcatttattggccgtgtttcaaggtctagtaaaagtagtattcagagtcgacacaaacttcacagt |
111 |
Q |
| |
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|||||||||||||||| || || |||||||| |||||| | || |||||||||||||||||| |||||||| | ||| |||||||||||||||| || |
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| T |
16735259 |
atgaacaattttgggtcattgggggtgtgtcagcgcatctttttgccgtgtttcaaggtctactaaaagtacttgcgagaatcgacacaaacttcactgt |
16735358 |
T |
|
| Q |
112 |
gacctcaaaagcatcagatgaaaacggagactctgcagaactgtacaagatcaaatggacatttcttctggttcctccaacgacacttttcatatttaac |
211 |
Q |
| |
|
|| || ||||||||||||||| |||||||||| | |||| |||| | |||||| |||| ||||| |||||||||| || ||| ||||| | ||| |
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| T |
16735359 |
cacttccaaagcatcagatgaagacggagactccacctaactctacatgttcaaatagacaacacttctcattcctccaacaacgcttctcataataaac |
16735458 |
T |
|
| Q |
212 |
ttgataggagttgttgctggtgtatcatatgctgtgaacgctggttaccgatcatctggtccgatctttggtaaac-ttttctttgcgttttgggtaatc |
310 |
Q |
| |
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||| ||| ||||||||||||| |||| |||||| | ||| || |||| ||||| ||| | || ||||||||| |||||||||| |||||||| ||| |
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| T |
16735459 |
ttggtagaagttgttgctggtatatcttatgctatcaacaatgcttactaatcatagggtac-ctc-ttggtaaactttttctttgcattttgggttatc |
16735556 |
T |
|
| Q |
311 |
attcatctcttccctttccttaaaggtcttatgggacgcaagaatcgaataccaaccattgttgtgttctggtcgatcatgcttgcaactgttttatctg |
410 |
Q |
| |
|
||||||||| |||||| ||||||||| |||||||||| | ||||||| | |||||||||||| |||| ||| || |||| | |||| ||| |
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| T |
16735557 |
gttcatctctacccttttcttaaaggttttatgggacgtcataatcgaacttcgaccattgttgtggtctgctcg---attcttgtgtccattttctctc |
16735653 |
T |
|
| Q |
411 |
tgttatgggttcgtcttgatccgtttaccacaaaagtcattggtcctaaagctgagaagtgtggaatt |
478 |
Q |
| |
|
| ||||||||||| ||||||||||||| || |||||| |||| |||||| |||| ||||||||||| |
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| T |
16735654 |
tattatgggttcgagttgatccgtttactac--aagtcactggttctaaagttgaggagtgtggaatt |
16735719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 95 - 369
Target Start/End: Original strand, 9482435 - 9482709
Alignment:
| Q |
95 |
gacacaaacttcacagtgacctcaaaagcatcagatgaaaacggagactctgcagaactgtacaagatcaaatggacatttcttctggttcctccaacga |
194 |
Q |
| |
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|||||||||||||| || ||||||||||| ||||||||| | ||||||||||||||||| |||| | | ||||||||| ||||| |||| ||||| | |
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| T |
9482435 |
gacacaaacttcactgttacctcaaaagcttcagatgaagatggagactctgcagaactatacatgtttaaatggacaacacttctcattccaccaacaa |
9482534 |
T |
|
| Q |
195 |
cacttttcatatttaacttgataggagttgttgctggtgtatcatatgctgtgaacgctggttaccgatcatctggtccgatctttggtaaacttttctt |
294 |
Q |
| |
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| ||| |||| | ||| | | ||||||||||| || | || |||||||| ||| ||| |||| ||||| || || ||||||||||||||||||| |
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| T |
9482535 |
ctcttctcattataaaccttgtcggagttgttgcaggaatctcttatgctgttaacagtggctaccaatcatggggaccactctttggtaaacttttctt |
9482634 |
T |
|
| Q |
295 |
tgcgttttgggtaatcattcatctcttccctttccttaaaggtcttatgggacgcaagaatcgaataccaaccat |
369 |
Q |
| |
|
||| |||||||| ||||| ||||||| ||| |||||||||||||||||||||||| |||| |||| |||||||| |
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| T |
9482635 |
tgcattttgggtgatcatccatctctaccccttccttaaaggtcttatgggacgccagaaccgaacgccaaccat |
9482709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 14 - 338
Target Start/End: Original strand, 64894 - 65218
Alignment:
| Q |
14 |
gaacaattttgggtgatcggcggtgtgtctgcgcatttattggccgtgtttcaaggtctagtaaaagtagtattcagagtcgacacaaacttcacagtga |
113 |
Q |
| |
|
||||| ||||||||||||| ||||||| ||||| | || |||||||| |||| | |||||||||| |||||| ||||||||||||| || | | |
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| T |
64894 |
gaacagttttgggtgatcgatggtgtgttagcgcacctttttgccgtgttccaagaccagctaaaagtagttttcagaatcgacacaaactttaccttca |
64993 |
T |
|
| Q |
114 |
cctcaaaagcatcagatgaaaacggagactctgcagaactgtacaagatcaaatggacatttcttctggttcctccaacgacacttttcatatttaactt |
213 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||||||| ||| | ||||||||||| ||||| |||||||| |||||| ||||| | || || |
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|
| T |
64994 |
ccttgaaagcatcagatgaaaacggaggctctgcagaactctacttgttcaaatggacaacacttctcaatcctccaaagacactactcataataaattt |
65093 |
T |
|
| Q |
214 |
gataggagttgttgctggtgtatcatatgctgtgaacgctggttaccgatcatctggtccgatctttggtaaacttttctttgcgttttgggtaatcatt |
313 |
Q |
| |
|
| ||| |||| ||||| || |||| ||||| | || |||||||| ||||| |||| ||||||||||||| ||||||| |||||||| |||||| |
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| T |
65094 |
ggtagaagttattgcttgtatatcttatgccatcaataatggttaccaatcattgggtctactctttggtaaactcttctttgtattttgggtcatcatt |
65193 |
T |
|
| Q |
314 |
catctcttccctttccttaaaggtc |
338 |
Q |
| |
|
| ||||| ||||||||||||||||| |
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|
| T |
65194 |
cgtctctaccctttccttaaaggtc |
65218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 65 - 344
Target Start/End: Complemental strand, 65659 - 65379
Alignment:
| Q |
65 |
caaggtctagtaaaagtagtattcagagtcgacacaaacttcacagtgacctcaaaagcatcagatgaaaacggagactctgcagaactgtacaagatca |
164 |
Q |
| |
|
||||||||| |||| ||||| || ||| |||||| ||||| || || |||| ||||| ||||| ||||| |||| |||| || ||| |||| | ||| |
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|
| T |
65659 |
caaggtctactaaacgtagtttttagaatcgacaaaaactcgaccgtcaccttgaaagcgtcagacgaaaaaggaggctctacataacgctacatgttca |
65560 |
T |
|
| Q |
165 |
aatggacatttcttctgg--ttcctccaacgacacttttcatatttaacttgataggagttgttgctggtgtatcatatgctgtgaacgctggttaccga |
262 |
Q |
| |
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|||||||| ||||| ||||||||||||||||| ||||| | |||||| |||||||||||||| || | || |||||| | || | |||| ||| | |
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| T |
65559 |
aatggacaacacttctttcattcctccaacgacacttctcataataaacttggtaggagttgttgctagtatttcttatgctattaatggtggtcaccaa |
65460 |
T |
|
| Q |
263 |
tcatctggtccgatctttggtaaacttttctttgcgttttgggtaatcattcatctcttccctttccttaaaggtcttatgg |
344 |
Q |
| |
|
|||| ||||| | ||||||||||||| |||||| |||||||| |||||||||| | | |||||||||||||||||||||| |
|
|
| T |
65459 |
tcattgggtccactttttggtaaactttgctttgcattttgggttatcattcatcgc-tacctttccttaaaggtcttatgg |
65379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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