View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1506_low_5 (Length: 504)
Name: NF1506_low_5
Description: NF1506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1506_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 13 - 485
Target Start/End: Original strand, 8428446 - 8428918
Alignment:
| Q |
13 |
aatatcaggacgatgatttatttatctatagatgtgattaactctaacctccaaaactattcaaaataactctaatctctaagtccacatgaagcttgac |
112 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8428446 |
aatatgaggacgacgatttatttatctatagatgtgattaactctaacctccaaaactattcaaaataactctaatctctaagtccacatgaagcttgac |
8428545 |
T |
|
| Q |
113 |
agaacctaaagcccttccctcaaccaaaagcaataacatatgcacttcctaacaaaggacaggaaatgaaatcaaactgataaatcttaagatgaaataa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8428546 |
agaacctaaagcccttccctcaaccaaaagcaataacatatgcacttcctaacaaaggacaggaaatgaaatcaaactgataaatcttaagatgaaataa |
8428645 |
T |
|
| Q |
213 |
tagnnnnnnnccagcgatacaccaaataacaagtaacaagatcaaatcattctgttatagttttggaatggggattttatcgttttaatacatagcgata |
312 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8428646 |
tggaaaaaaaccagcgatacaccaaataacaagtaacaagatcaaatcattctgttatagttttggaatggggattttatcgttttaatacatagcgata |
8428745 |
T |
|
| Q |
313 |
cacattgattgagtcaggtcagtgaccttgcatatcaagcatttcatcgagtcgtttcaatttttccaagccttcactgatcaagaaacggatcctttgt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8428746 |
cacattgattgagtcaggtcagtgaccttgcatatcaagcatttcatcgagtcgtttcaatttttccaagccttcactgatcaagaaacggatcctttgt |
8428845 |
T |
|
| Q |
413 |
ttgtcattgcagtttcgattaatttcaatctcttgtctaatagtttgtctcagttcacctgcacatctcaagc |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8428846 |
ttgtcattgcagtttcgattaatttcaatctcttgtctaatagtttgtctcagttcacctgcacatctcaagc |
8428918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University