View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1507-Insertion-1 (Length: 1041)

Name: NF1507-Insertion-1
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1507-Insertion-1
NF1507-Insertion-1
[»] chr4 (6 HSPs)
chr4 (9-667)||(622724-623382)
chr4 (71-667)||(31676441-31677036)
chr4 (7-610)||(32185550-32186151)
chr4 (668-788)||(5322641-5322761)
chr4 (669-752)||(16924448-16924530)
chr4 (631-666)||(32185489-32185524)
[»] chr8 (5 HSPs)
chr8 (7-666)||(30934672-30935331)
chr8 (668-788)||(35631380-35631499)
chr8 (668-752)||(11722646-11722729)
chr8 (668-756)||(16375912-16375999)
chr8 (668-766)||(9763185-9763282)
[»] chr7 (13 HSPs)
chr7 (7-666)||(7662915-7663574)
chr7 (757-1040)||(26172373-26172656)
chr7 (668-870)||(7916208-7916407)
chr7 (927-1040)||(7916403-7916517)
chr7 (666-784)||(17737878-17737993)
chr7 (668-756)||(21781036-21781122)
chr7 (668-752)||(7306086-7306169)
chr7 (668-752)||(19764408-19764491)
chr7 (718-752)||(1534058-1534092)
chr7 (718-756)||(38705919-38705957)
chr7 (719-784)||(41201797-41201862)
chr7 (663-762)||(23769329-23769427)
chr7 (668-750)||(9670416-9670497)
[»] chr3 (10 HSPs)
chr3 (667-1040)||(6305833-6306205)
chr3 (748-1040)||(32926364-32926656)
chr3 (676-805)||(20850218-20850346)
chr3 (719-784)||(18554346-18554411)
chr3 (719-784)||(23702370-23702435)
chr3 (719-784)||(23720826-23720891)
chr3 (719-784)||(23739282-23739347)
chr3 (668-752)||(33908876-33908959)
chr3 (668-752)||(46830136-46830219)
chr3 (982-1040)||(20856662-20856722)
[»] chr1 (6 HSPs)
chr1 (668-1040)||(2399293-2399664)
chr1 (726-1039)||(45877791-45878105)
chr1 (668-752)||(34678662-34678745)
chr1 (668-766)||(20338927-20339024)
chr1 (718-766)||(49329508-49329556)
chr1 (718-752)||(25259512-25259546)
[»] chr6 (9 HSPs)
chr6 (668-1040)||(31519894-31520265)
chr6 (668-1040)||(17311147-17311518)
chr6 (127-238)||(2143718-2143829)
chr6 (719-784)||(13338063-13338128)
chr6 (719-784)||(28902876-28902941)
chr6 (668-752)||(4968258-4968341)
chr6 (668-739)||(20106166-20106236)
chr6 (718-756)||(4449212-4449250)
chr6 (718-756)||(13507591-13507629)
[»] chr2 (7 HSPs)
chr2 (668-766)||(7094844-7094941)
chr2 (666-752)||(37393256-37393341)
chr2 (668-752)||(4969036-4969119)
chr2 (668-752)||(11882202-11882285)
chr2 (667-752)||(35593210-35593294)
chr2 (668-762)||(1696879-1696972)
chr2 (668-762)||(33058024-33058117)
[»] chr5 (2 HSPs)
chr5 (719-784)||(2063580-2063645)
chr5 (718-756)||(33891899-33891937)
[»] scaffold0260 (1 HSPs)
scaffold0260 (668-766)||(1250-1347)
[»] scaffold0573 (1 HSPs)
scaffold0573 (719-784)||(6853-6918)
[»] scaffold0214 (1 HSPs)
scaffold0214 (718-756)||(370-408)
[»] scaffold0669 (1 HSPs)
scaffold0669 (668-752)||(6825-6908)


Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 9 - 667
Target Start/End: Original strand, 622724 - 623382
Alignment:
Q  9 ctgattccttctacaccaactagtaatgaggatccagtcnnnnnnnnnnnntctgatggacgagctaatgggactcatattggatcttatcttgttttgg 108  Q
    |||||||||||||||||||||||||||||| ||||||||            ||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  622724 ctgattccttctacaccaactagtaatgagcatccagtcaaaaataaaaaatctaatggacaagctaatgggactcatattggatcttatcttgttttgg 622823  T
Q  109 tttatcaccnnnnnnnnctttccaatgacaatagtttataattcaccgtgaaaatgattttgaaatacaacatttaaacatagggcttgagtgatttgtc 208  Q
    |||||||||        ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||    
T  622824 tttatcaccttttttttctttccagtgacaatagtttataattcaccgtgaaaatgattttgaaatacaaaatttaaacatagggtttgggtgatttgtc 622923  T
Q  209 tttaagggaactgatttccctcatgaaaaatgtactctcaatgggtggtcacataggcttacaatttctctaaatctcacccnnnnnnnnnnnnnnnnac 308  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||                 ||    
T  622924 tttaagggaactgatttccctcatgaaaaatgtactatcaatgggtggtcacataggcttacaatttctctaaatctcacc-ttttttttttttttttac 623022  T
Q  309 aaaaatttaaatctcacttttatcccacatatttttcataaaaacaaaattaatattttagcacatttctgtctatcacagcaagaaggggttgaaatct 408  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  623023 aaaaatctaaatctcacttttatcccacatatttttcataaaaacaaaattaacattttagcacatttctgtctatcacagcaagaaggggttggaatct 623122  T
Q  409 tggatgtgaattgaccaacgaaccaagataattgctccacgagaaatttatggtttaaatggatgggtgaaggtgaagatgagatagaggaagaaggcag 508  Q
    | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  623123 ttgatgtgaattgaccgacgaaccaagataattgctccacgagaaatttatggtttaaatggaggggtgaaggtgaagatgagatagaggaagaaggaag 623222  T
Q  509 gagcctgtagcgattaacaaagagaaatggagagaggaggaaaatgattcttagcctagggattatacagaagtgcataaatgtaattacattgtatggg 608  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  623223 gagcctgtagcgaataacaaagagaaatggagagaggaggaaaatgattcttagcctagggattatacagaagtgcataaatgtaattaccttgtatggg 623322  T
Q  609 gcagtggac-nnnnnnnngaagtgaaacctgatgtagaaggtcaattagagaggaccatg 667  Q
    ||  |||||         ||||||||||||||||||||||||||||||| ||||||||||    
T  623323 gccatggacaaaaaaaaagaagtgaaacctgatgtagaaggtcaattagtgaggaccatg 623382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 71 - 667
Target Start/End: Complemental strand, 31677036 - 31676441
Alignment:
Q  71 agctaatgggactcatattggatcttatcttgttttggtttatcaccnnnnnnnn--ctttccaatgacaatagtttataattcaccgtgaaaatgattt 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          ||||||| |||||||||||||||||||||||||||||||||||    
T  31677036 agctaatgggactcatattggatcttatcttgttttggtttatcaccttttttttttctttccagtgacaatagtttataattcaccgtgaaaatgattt 31676937  T
Q  169 tgaaatacaacatttaaacatagggcttgagtgatttgtctttaagggaactgatttccctcatgaaaaatgtactctcaatgggtggtcacataggctt 268  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31676936 tgaaatacaacatttaaacatagggcttgggtgatttgtctttaagggaactgatttccctcatgaaaaatgtactctcaatgggtggtcacataggctt 31676837  T
Q  269 acaatttctctaaatctcacccnnnnnnnnnnnnnnnnacaaaaatttaaatctcacttttatcccacatatttttcataaaaacaaaattaatatttta 368  Q
    |||||||||||||||||||||                 |||||||| |||||||||||||||| | ||||||||||||||||||||||||||| ||||||    
T  31676836 acaatttctctaaatctcacc------tttttttttttacaaaaatctaaatctcacttttattctacatatttttcataaaaacaaaattaacatttta 31676743  T
Q  369 gcacatttctgtctatcacagcaagaaggggttgaaatcttggatgtgaattgaccaacgaaccaagataattgctccacgagaaatttatggtttaaat 468  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31676742 gcacatttctgtctatcacagcaagaaggggttggaatcttggatgtgaattgaccaacgaactaagataattgctccacgagaaatttatggtttaaat 31676643  T
Q  469 ggatgggtgaaggtgaagatgagatagaggaagaaggcaggagcctgtagcgattaacaaagagaaatggagagaggaggaaaatgattcttagcctagg 568  Q
    ||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31676642 ggaggggtgaaggtgaagatgagatagaggaagaaggaaggagactgtagcgattaacaaagagaaatggagagaggaggaaaatgattcttagcctagg 31676543  T
Q  569 gattatacagaagtgcataaatgtaattacattgtatggggcagtggac---nnnnnnnngaagtgaaacctgatgtagaaggtcaattagagaggacca 665  Q
    |||||||||||||||||||||||||||||| |||||||||||  |||||            |||||||||||||||||||||||||||||||||||||||    
T  31676542 gattatacagaagtgcataaatgtaattaccttgtatggggccatggacaaaaaaaaaaaaaagtgaaacctgatgtagaaggtcaattagagaggacca 31676443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 7 - 610
Target Start/End: Complemental strand, 32186151 - 32185550
Alignment:
Q  7 acctgattccttctacaccaactagtaatgaggatccagtcnnnnnnnnnnnntctgatggacgagctaatgggactcatattggatcttatcttgtttt 106  Q
    |||||||||||||||||||||||||||||||| ||||||||            ||| |||||| ||| ||||||||||||||||||||||||||||||||    
T  32186151 acctgattccttctacaccaactagtaatgagcatccagtcaaaaataaaaaatctaatggacaagcaaatgggactcatattggatcttatcttgtttt 32186052  T
Q  107 ggtttatcaccnnnnnnnnctttccaatgacaata--gtttataattcaccgtgaaaatgattttgaaatacaacatttaaacatagggcttgagtgatt 204  Q
    |||||||||||        ||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  32186051 ggtttatcaccttttttttctttccagtgacaatacagtttataattcaccgtgaaaatgattttgaaatacaacatttaaacatagggcttgggcgatt 32185952  T
Q  205 tgtctttaagggaactgatttccctcatgaaaaatgtactctcaatgggtggtcacataggcttacaatttctctaaatctcacccnnnnnnnnnnnnnn 304  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||  ||                  
T  32185951 tgtctttaagggaactaatttccctcgtgaaaaatgtactctcaatgggtagtcacataggcttacaatttctctaa-tctctaccttttttttttttt- 32185854  T
Q  305 nnacaaaaatttaaatctcacttttatcccacatatttttcataaaaacaaaattaatattttagcacatttctgtctatcacagcaagaaggggttgaa 404  Q
      |||||||| |||||||||||||||| |||||||||||||||| |||||||||||| |||| ||||||||| ||| ||||||||||||||||||||| |    
T  32185853 --acaaaaatctaaatctcacttttataccacatatttttcatagaaacaaaattaacatttcagcacatttttgtttatcacagcaagaaggggttgga 32185756  T
Q  405 atcttggatgtgaattgaccaacgaaccaagataattgctccacgagaaatttatggtttaaatggatgggtgaaggtgaagatgagatagaggaagaag 504  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32185755 atcttggatgtgaattgaccaacgaaccaagataattgctccaggagaaatttatggtttaaatggaggggtgaaggtgaagatgagatagaggaagaag 32185656  T
Q  505 gcaggagcctgtagcgattaacaaagagaaatggagagaggaggaaaatgattcttagcctagggattatacagaagtgcataaatgtaattacattgta 604  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  32185655 gaaggagcctgtagcgattaacaaagagaaatggagagaggaggaaaatgattcttagcctagagattatacagaagtgcataaatgtaattaccttgta 32185556  T
Q  605 tggggc 610  Q
    ||||||    
T  32185555 tggggc 32185550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 668 - 788
Target Start/End: Original strand, 5322641 - 5322761
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaaggacaacacctggcatat 767  Q
    |||||||||||| || || ||||| ||| || ||||||||||||||||  |||||||| |||||| ||||||||||||||||||| ||| ||||||||||    
T  5322641 cactacaagaaacattaccttttgtcagggattttgacagggggtttgaaacccctgggaaatttaccagggaaaatgccaaggataacccctggcatat 5322740  T
Q  768 aacacaagggtttgccctcac 788  Q
    |||||||||||||||||||||    
T  5322741 aacacaagggtttgccctcac 5322761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 669 - 752
Target Start/End: Complemental strand, 16924530 - 16924448
Alignment:
Q  669 actacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaagga 752  Q
    ||||||||||  ||||| |||||| || || ||||||| ||| ||||  ||||||||||||||||||||||||||| |||||||    
T  16924530 actacaagaataatgaccttttgctagggattttgacaaggg-tttgaaacccctggcaaatttgccagggaaaataccaagga 16924448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 666
Target Start/End: Complemental strand, 32185524 - 32185489
Alignment:
Q  631 gaaacctgatgtagaaggtcaattagagaggaccat 666  Q
    ||||| ||||||||||||||||||||||||||||||    
T  32185524 gaaacttgatgtagaaggtcaattagagaggaccat 32185489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 7 - 666
Target Start/End: Complemental strand, 30935331 - 30934672
Alignment:
Q  7 acctgattccttctacaccaactagtaatgaggatccagtcnnnnnnnnnnnntctgatggacgagctaatgggactcatattggatcttatcttgtttt 106  Q
    |||||||||||||||||||||||||||||||| ||||||||            ||| |||||| ||| ||||||||||||||||||||||||||||||||    
T  30935331 acctgattccttctacaccaactagtaatgagcatccagtcaaaaataaaaaatctaatggacaagcaaatgggactcatattggatcttatcttgtttt 30935232  T
Q  107 ggtttatcaccnnnnnnnnctttccaatgacaata--gtttataattcaccgtgaaaatgattttgaaatacaacatttaaacatagggcttgagtgatt 204  Q
    |||||||||||        ||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  30935231 ggtttatcaccttttttttctttccagtgacaatacagtttataattcaccgtgaaaatgattttgaaatacaacatttaaacatagggcttgggcgatt 30935132  T
Q  205 tgtctttaagggaactgatttccctcatgaaaaatgtactctcaatgggtggtcacataggcttacaatttctctaaatctcacccnnnnnnnnnnnnnn 304  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||                   
T  30935131 tgtctttaagggaactaatttccctcgtgaaaaatgtactctcaatgggtagtcacataggcttacaatttctctaa-tctcacc---tttttttttttt 30935036  T
Q  305 nnacaaaaatttaaatctcacttttatcccacatatttttcataaaaacaaaattaatattttagcacatttctgtctatcacagcaagaaggggttgaa 404  Q
      |||||||| |||||||||||||||| |||||||||||||||| |||||||||||| |||| ||||||||| ||| ||||||||||||||||||||| |    
T  30935035 ttacaaaaatctaaatctcacttttataccacatatttttcatagaaacaaaattaacatttcagcacatttttgtttatcacagcaagaaggggttgga 30934936  T
Q  405 atcttggatgtgaattgaccaacgaaccaagataattgctccacgagaaatttatggtttaaatggatgggtgaaggtgaagatgagatagaggaagaag 504  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30934935 atcttggatgtgaattgaccaacgaaccaagataattgctccaggagaaatttatggtttaaatggaggggtgaaggtgaagatgagatagaggaagaag 30934836  T
Q  505 gcaggagcctgtagcgattaacaaagagaaatggagagaggaggaaaatgattcttagcctagggattatacagaagtgcataaatgtaattacattgta 604  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  30934835 gaaggagcctgtagcgattaacaaagagaaatggagagaggaggaaaatgattcttagcctagagattatacagaagtgcataaatgtaattaccttgta 30934736  T
Q  605 tggggcagtggac--nnnnnnnngaagtgaaacctgatgtagaaggtcaattagagaggaccat 666  Q
    ||||||  |||||          |||||||||||||||||||||||||||||||||||||||||    
T  30934735 tggggccatggacaaaaaaaaaagaagtgaaacctgatgtagaaggtcaattagagaggaccat 30934672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 668 - 788
Target Start/End: Complemental strand, 35631499 - 35631380
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaaggacaacacctggcatat 767  Q
    |||||||||||| || ||  ||||||||||| ||||||||||| ||||  |||||||| |||||| |||||||||||| |||||| ||||||||||||||    
T  35631499 cactacaagaaacattaccatttgccagagattttgacagggg-tttgaaacccctggaaaatttaccagggaaaatgtcaaggataacacctggcatat 35631401  T
Q  768 aacacaagggtttgccctcac 788  Q
    |||| ||||||||||||||||    
T  35631400 aacagaagggtttgccctcac 35631380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 668 - 752
Target Start/End: Complemental strand, 11722729 - 11722646
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaagga 752  Q
    |||||||||||  ||||| ||||||||| || ||||||| ||| ||||  ||||||||||||||||||||||||||| |||||||    
T  11722729 cactacaagaataatgaccttttgccagggattttgacaaggg-tttgaaacccctggcaaatttgccagggaaaataccaagga 11722646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 668 - 756
Target Start/End: Complemental strand, 16375999 - 16375912
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaaggacaac 756  Q
    |||| ||||||  ||||| ||||||||| || |||| || ||| ||||  |||||||||||||||||||||||||||||||||||||||    
T  16375999 cactgcaagaataatgaccttttgccagggattttgtcaaggg-tttgaaacccctggcaaatttgccagggaaaatgccaaggacaac 16375912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 668 - 766
Target Start/End: Original strand, 9763185 - 9763282
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaaggacaacacctggcata 766  Q
    |||||||||||  ||||| ||||||||| || |||| || ||| ||||  |||| |||||||||||||| |||||||||||||||||||  ||||||||    
T  9763185 cactacaagaataatgaccttttgccagggattttgtcaaggg-tttgaaacccttggcaaatttgccaaggaaaatgccaaggacaaccgctggcata 9763282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 7 - 666
Target Start/End: Complemental strand, 7663574 - 7662915
Alignment:
Q  7 acctgattccttctacaccaactagtaatgaggatccagtcnnnnnnnnnnnntctgatggacgagctaatgggactcatattggatcttatcttgtttt 106  Q
    |||||||||||||||||||||||||||||||| ||||||||            ||| |||||| ||| ||||||||||||||||||||||||||||||||    
T  7663574 acctgattccttctacaccaactagtaatgagcatccagtcaaaaataaaaaatctaatggacaagcaaatgggactcatattggatcttatcttgtttt 7663475  T
Q  107 ggtttatcaccnnnnnnnnctttccaatgacaata--gtttataattcaccgtgaaaatgattttgaaatacaacatttaaacatagggcttgagtgatt 204  Q
    |||||||||||        ||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||    
T  7663474 ggtttatcaccttttttttctttccagtgacaatacagtttataattcaccgtgaaaatgattttgaaatacaacatttaaatatagggcttgggcgatt 7663375  T
Q  205 tgtctttaagggaactgatttccctcatgaaaaatgtactctcaatgggtggtcacataggcttacaatttctctaaatctcacccnnnnnnnnnnnnnn 304  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||                   
T  7663374 tgtctttaagggaactaatttccctcgtgaaaaatgtactctcaatgggtagtcacataggcttacaatttctctaa-tctcacc---tttttttttttt 7663279  T
Q  305 nnacaaaaatttaaatctcacttttatcccacatatttttcataaaaacaaaattaatattttagcacatttctgtctatcacagcaagaaggggttgaa 404  Q
      |||||||| |||||||||||||||| |||||||||||||||| |||||||||||| |||| ||||||||| ||| ||||||||||||||||||||| |    
T  7663278 ttacaaaaatctaaatctcacttttataccacatatttttcatagaaacaaaattaacatttcagcacatttttgtttatcacagcaagaaggggttgga 7663179  T
Q  405 atcttggatgtgaattgaccaacgaaccaagataattgctccacgagaaatttatggtttaaatggatgggtgaaggtgaagatgagatagaggaagaag 504  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7663178 atcttggatgtgaattgaccaacgaaccaagataattgctccaggagaaatttatggtttaaatggaggggtgaaggtgaagatgagatagaggaagaag 7663079  T
Q  505 gcaggagcctgtagcgattaacaaagagaaatggagagaggaggaaaatgattcttagcctagggattatacagaagtgcataaatgtaattacattgta 604  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  7663078 gaaggagcctgtagcgattaacaaagagaaatggagagaggaggaaaatgattcttagcctagagattatacagaagtgcataaatgtaattaccttgta 7662979  T
Q  605 tggggcagtggac--nnnnnnnngaagtgaaacctgatgtagaaggtcaattagagaggaccat 666  Q
    ||||||  |||||          |||||||||||||||||||||||||||||||||||||||||    
T  7662978 tggggccatggacaaaaaaaaaagaagtgaaacctgatgtagaaggtcaattagagaggaccat 7662915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 7e-98
Query Start/End: Original strand, 757 - 1040
Target Start/End: Original strand, 26172373 - 26172656
Alignment:
Q  757 acctggcatataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgctacacgcagggcttgaggt 856  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||    
T  26172373 acctggcatataacacaagggtttgtcctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgctgcatgca-ggcttgaagt 26172471  T
Q  857 gactaaagtaggtggctgtcaggcaaaacccgagggaatatgccagggaaggcccctgggatgggaaaaaaggtgatgaatcctctgcattgtttcctgt 956  Q
    ||||||||||||||||||||||| |||| || ||||||||||||| |||| |||| ||||||||||||||||||||||||| |||||| ||||||| |||    
T  26172472 gactaaagtaggtggctgtcaggaaaaaaccaagggaatatgccaaggaaagcccttgggatgggaaaaaaggtgatgaat-ctctgctttgtttcttgt 26172570  T
Q  957 tgatttgacaaggctctgaaaggcttgtccgggtcagttgagaaaggggc-atacccctcgtttattgcgtg-atccctggctttt 1040  Q
    ||||||||||||||||||||| || |||||||  ||||||||| |||||| |||||||||||||||||| || |||||||||||||    
T  26172571 tgatttgacaaggctctgaaaagcatgtccggtccagttgagacaggggcaatacccctcgtttattgcatgaatccctggctttt 26172656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 668 - 870
Target Start/End: Original strand, 7916208 - 7916407
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaaggacaacacctggcatat 767  Q
    ||||||||||||||||||||||| |||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7916208 cactacaagaaatatgacattttaccagggattttgacagggg-tttggaacccctggcaaatttgccagggaaaatgccaaggacaacacctggcatat 7916306  T
Q  768 aacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgctacacgcagggcttgaggtgactaaagtag 867  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||| |||||||||||||    
T  7916307 aacacaagggtttgccctcacaaaa-ccctcacttattgcaaggtgggaaattgaaattcaagaatctgctgcatgca-gacttgaagtgactaaagtag 7916404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 927 - 1040
Target Start/End: Original strand, 7916403 - 7916517
Alignment:
Q  927 aggtgatgaatcctctgcattgtttcctgttgatttgacaaggctctgaaaggcttgtccgggtcagttgagaaaggggc-atacccctcgtttattgcg 1025  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||  || |||||| |||||| |||||||||||||||||||    
T  7916403 aggtgatgaatc-tctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccaattgagacaggggcaatacccctcgtttattgcg 7916501  T
Q  1026 tg-atccctggctttt 1040  Q
    || |||||||||||||    
T  7916502 tgaatccctggctttt 7916517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 666 - 784
Target Start/End: Original strand, 17737878 - 17737993
Alignment:
Q  666 tgcactacaagaaatatgacattttgccagagaatttgacagggggtttggtaccc-ctggcaaatttgccagggaaaatgccaaggacaacacctggca 764  Q
    ||||||| |||||||||| || |||||||  || ||||||||||| ||||  |||| |||| |||||   ||||||||||||||| || |||  ||||||    
T  17737878 tgcactataagaaatatggcaatttgccaaggattttgacagggg-tttgaaaccctctgggaaatt---cagggaaaatgccaacgataacctctggca 17737973  T
Q  765 tataacacaagggtttgccc 784  Q
    ||||||||||||||||||||    
T  17737974 tataacacaagggtttgccc 17737993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 668 - 756
Target Start/End: Complemental strand, 21781122 - 21781036
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaaggacaac 756  Q
    |||||||||||  ||||| ||||||||| || |||| || ||  ||||  ||||||||||||||||||||||||||||||| |||||||    
T  21781122 cactacaagaataatgaccttttgccagggattttgtcaagg--tttgaaacccctggcaaatttgccagggaaaatgccagggacaac 21781036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 668 - 752
Target Start/End: Complemental strand, 7306169 - 7306086
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaagga 752  Q
    |||||||||||  |||||  |||||||| || ||||||| ||| ||||  ||||||||||||||||||||||||||| |||||||    
T  7306169 cactacaagaataatgaccatttgccagggattttgacaaggg-tttgaaacccctggcaaatttgccagggaaaataccaagga 7306086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 668 - 752
Target Start/End: Complemental strand, 19764491 - 19764408
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaagga 752  Q
    |||||||||||  ||||| ||||||||| || ||||||| ||| ||||  |||||||||||||||| |||||||||| |||||||    
T  19764491 cactacaagaataatgaccttttgccagggattttgacaaggg-tttgaaacccctggcaaatttgacagggaaaataccaagga 19764408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 718 - 752
Target Start/End: Original strand, 1534058 - 1534092
Alignment:
Q  718 acccctggcaaatttgccagggaaaatgccaagga 752  Q
    |||||||||||||||||||||||||||||||||||    
T  1534058 acccctggcaaatttgccagggaaaatgccaagga 1534092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 718 - 756
Target Start/End: Complemental strand, 38705957 - 38705919
Alignment:
Q  718 acccctggcaaatttgccagggaaaatgccaaggacaac 756  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  38705957 acccctggcaaatttgccagggaaaatgccagggacaac 38705919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 719 - 784
Target Start/End: Complemental strand, 41201862 - 41201797
Alignment:
Q  719 cccctggcaaatttgccagggaaaatgccaaggacaacacctggcatataacacaagggtttgccc 784  Q
    |||||||||||||| ||||||||||||||||||||||   |||||| | |||||  ||||||||||    
T  41201862 cccctggcaaattttccagggaaaatgccaaggacaatcgctggcaaaaaacactggggtttgccc 41201797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 762
Target Start/End: Original strand, 23769329 - 23769427
Alignment:
Q  663 ccatgcactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaaggacaacacctgg 762  Q
    |||| |||||||||||| || || ||||||||| || ||||||||||  |||   |||||||| |||| | ||| ||||||||||||||||||| |||||    
T  23769329 ccattcactacaagaaacattaccttttgccagggattttgacagggt-tttaaaacccctggtaaatataccacggaaaatgccaaggacaacccctgg 23769427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 668 - 750
Target Start/End: Original strand, 9670416 - 9670497
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaag 750  Q
    |||||||||||| ||| |  ||||| || || |||||||||||  ||  |||||||||||||||| |||||||||||||||||    
T  9670416 cactacaagaaaaatgcccatttgctagggattttgacaggggtattt-tacccctggcaaatttaccagggaaaatgccaag 9670497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 667 - 1040
Target Start/End: Original strand, 6305833 - 6306205
Alignment:
Q  667 gcactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaaggacaacacctggcata 766  Q
    ||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6305833 gcactacaagaaatatgacattttgccagggattttgacagggg-tttggtacccctggcaaatttgtcagggaaaatgccaaggacaacacctggcata 6305931  T
Q  767 taacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgctacacgcagggcttgaggtgactaaagta 866  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| ||||||||||||    
T  6305932 taacacaagggttttccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctactacatgca-ggcttgaagtgactaaagta 6306030  T
Q  867 ggtggctgtcaggcaaaacccgagggaatatgccagggaaggcccctgggatgggaaaaaaggtgatgaatcctctgcattgtttcctgttgatttgaca 966  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6306031 ggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaat-ctctgcattgtttcctgttgatttgaca 6306129  T
Q  967 aggctctgaaaggcttgtccgggtcagttgagaaaggggc-atacccctcgtttattgcgtg-atccctggctttt 1040  Q
    ||||||||||| || |||||||  ||||||||| |||||| ||||||||||||||||||||| |||||||||||||    
T  6306130 aggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggctttt 6306205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 748 - 1040
Target Start/End: Original strand, 32926364 - 32926656
Alignment:
Q  748 aaggacaacacctggcatataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgctacacgcagg 847  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || ||| |    
T  32926364 aaggacaacacctggcatataacacaagggtttgccctcacaaaactcctcacttattgcaaggtgggaaattgaaattcaagaatctgttgcatgca-g 32926462  T
Q  848 gcttgaggtgactaaagtaggtggctgtcaggcaaaacccgagggaatatgccagggaaggcccctgggatgggaaaaaaggtgatgaatcctctgcatt 947  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||    
T  32926463 gcttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgtcagggaaagcccctgggatgggaaaaaaggtgatgaat-ctctgcatt 32926561  T
Q  948 gtttcctgttgatttgacaaggctctgaaaggcttgtccgggtcagttgagaaaggggc-atacccctcgtttattgcgtg-atccctggctttt 1040  Q
    |||||||||||||||||||||||||||||| || |||||||  | ||||||| |||||| ||||||||||||||||||||| |||||||||||||    
T  32926562 gtttcctgttgatttgacaaggctctgaaaagcctgtccggtccggttgagacaggggcaatacccctcgtttattgcgtgaatccctggctttt 32926656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 676 - 805
Target Start/End: Original strand, 20850218 - 20850346
Alignment:
Q  676 gaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaaggacaacacctggcatataacacaag 775  Q
    |||||||||||||||||||| || |||| |||||| ||||  ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  20850218 gaaatatgacattttgccagggattttggcagggg-tttgaaacccctggcaaatttgccaaggaaaatgcgaaggacaacacctggcatataacacaag 20850316  T
Q  776 ggtttgccctcacaaaacccctcacttatt 805  Q
    ||||||||||||||||||||||||||||||    
T  20850317 ggtttgccctcacaaaacccctcacttatt 20850346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 719 - 784
Target Start/End: Complemental strand, 18554411 - 18554346
Alignment:
Q  719 cccctggcaaatttgccagggaaaatgccaaggacaacacctggcatataacacaagggtttgccc 784  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| | |||||  ||||||||||    
T  18554411 cccctggcaaatttgccagggaaaatgccaaggacaaccgctggcaaaaaacactggggtttgccc 18554346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 719 - 784
Target Start/End: Original strand, 23702370 - 23702435
Alignment:
Q  719 cccctggcaaatttgccagggaaaatgccaaggacaacacctggcatataacacaagggtttgccc 784  Q
    |||||||||||||| |||||||||||||||||||||||  |||||| | |||||  ||||||||||    
T  23702370 cccctggcaaattttccagggaaaatgccaaggacaaccgctggcaaaaaacactggggtttgccc 23702435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 719 - 784
Target Start/End: Original strand, 23720826 - 23720891
Alignment:
Q  719 cccctggcaaatttgccagggaaaatgccaaggacaacacctggcatataacacaagggtttgccc 784  Q
    |||||||||||||| |||||||||||||||||||||||  |||||| | |||||  ||||||||||    
T  23720826 cccctggcaaattttccagggaaaatgccaaggacaaccgctggcaaaaaacactggggtttgccc 23720891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 719 - 784
Target Start/End: Original strand, 23739282 - 23739347
Alignment:
Q  719 cccctggcaaatttgccagggaaaatgccaaggacaacacctggcatataacacaagggtttgccc 784  Q
    |||||||||||||| |||||||||||||||||||||||  |||||| | |||||  ||||||||||    
T  23739282 cccctggcaaattttccagggaaaatgccaaggacaaccgctggcaaaaaacactggggtttgccc 23739347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 668 - 752
Target Start/End: Complemental strand, 33908959 - 33908876
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaagga 752  Q
    |||||||||||  |||||  |||||||| || ||||||| ||| ||||  ||||||||||||||||||||||||||| |||||||    
T  33908959 cactacaagaataatgaccctttgccagggattttgacaaggg-tttgaaacccctggcaaatttgccagggaaaataccaagga 33908876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 668 - 752
Target Start/End: Original strand, 46830136 - 46830219
Alignment:
Q  668 cactacaagaaatatgacat-tttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaagga 752  Q
    |||||||||||||||| ||| ||||| ||||| ||||||||||| |  |  ||||||||||||||||||||||||||| |||||||    
T  46830136 cactacaagaaatatg-catatttgctagagattttgacagggg-taagaaacccctggcaaatttgccagggaaaataccaagga 46830219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 982 - 1040
Target Start/End: Original strand, 20856662 - 20856722
Alignment:
Q  982 tgtccgggtcagttgagaaaggggca-tacccctcgtttattgcgtg-atccctggctttt 1040  Q
    |||||||  ||||||||| ||||||| |||||||||||||||||||| |||||||||||||    
T  20856662 tgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggctttt 20856722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 668 - 1040
Target Start/End: Complemental strand, 2399664 - 2399293
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaaggacaacacctggcatat 767  Q
    |||||||||||||||||||||||||||| || ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2399664 cactacaagaaatatgacattttgccagggattttgacaaggg-tttggtacccctggcaaatttgccagggaaaatgccaaggacaacacctggcatat 2399566  T
Q  768 aacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgctacacgcagggcttgaggtgactaaagtag 867  Q
     | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |||||||||||||    
T  2399565 gatacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgctacatgga-ggcttgaagtgactaaagtag 2399467  T
Q  868 gtggctgtcaggcaaaacccgagggaatatgccagggaaggcccctgggatgggaaaaaaggtgatgaatcctctgcattgtttcctgttgatttgacaa 967  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  2399466 gtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaatgtgatgaat-ctctgcattgtttcctgttgatttgacaa 2399368  T
Q  968 ggctctgaaaggcttgtccgggtcagttgagaaaggggc-atacccctcgtttattgcgtg-atccctggctttt 1040  Q
    |||||||||| || |||||||  ||||||||| |||||| ||||||||||||||||||||| |||||||||||||    
T  2399367 ggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggctttt 2399293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 726 - 1039
Target Start/End: Complemental strand, 45878105 - 45877791
Alignment:
Q  726 caaatttgccagggaaaatgccaaggacaacacctggcata-taacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaa 824  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45878105 caaatttgccagggaaaatgccaaggacaacacctggcataataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaa 45878006  T
Q  825 ttcaagaatctgctacacgcagggcttgaggtgactaaagtaggtggctgtcaggcaaaacccgagggaatatgccagggaaggcccctgggatgggaaa 924  Q
    ||||||||| |||| || ||||| ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||    
T  45878005 ttcaagaatttgctgcatgcagg-cttgaagtgactaaagtaggtggctgtcaggcaaaaactgagggaatatgccagggaaagcccctgggatgggaaa 45877907  T
Q  925 aaaggtgatgaatcctctgcattgtttcctgttgatttgacaaggctctgaaaggcttgtccgggtcagttgagaaaggggc-atacccctcgtttattg 1023  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||  ||||||||| |||||| |||||||||||||||||    
T  45877906 aaaggtgatgaat-ctctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattg 45877808  T
Q  1024 cgtg-atccctggcttt 1039  Q
    |||| ||||||||||||    
T  45877807 cgtgaatccctggcttt 45877791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 668 - 752
Target Start/End: Complemental strand, 34678745 - 34678662
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaagga 752  Q
    |||||||||||  ||||| ||||||||| || ||||||| ||| |||| |||||||||||||||||||||||||||| |||||||    
T  34678745 cactacaagaataatgaccttttgccagggattttgacaaggg-tttgatacccctggcaaatttgccagggaaaataccaagga 34678662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 668 - 766
Target Start/End: Complemental strand, 20339024 - 20338927
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaaggacaacacctggcata 766  Q
    |||||||||||  ||||| ||||||||| || |||| || ||| ||||  |||||||| |||||||||||||||||||||||||| |||  ||||||||    
T  20339024 cactacaagaataatgaccttttgccagggattttgtcaaggg-tttgacacccctggaaaatttgccagggaaaatgccaaggagaactgctggcata 20338927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 718 - 766
Target Start/End: Complemental strand, 49329556 - 49329508
Alignment:
Q  718 acccctggcaaatttgccagggaaaatgccaaggacaacacctggcata 766  Q
    ||||||||||||||||||||||||||||||||||| |||  ||||||||    
T  49329556 acccctggcaaatttgccagggaaaatgccaaggagaactgctggcata 49329508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 718 - 752
Target Start/End: Original strand, 25259512 - 25259546
Alignment:
Q  718 acccctggcaaatttgccagggaaaatgccaagga 752  Q
    |||||||||||||||||||| ||||||||||||||    
T  25259512 acccctggcaaatttgccagagaaaatgccaagga 25259546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 267; Significance: 1e-148; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 668 - 1040
Target Start/End: Original strand, 31519894 - 31520265
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaaggacaacacctggcatat 767  Q
    |||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31519894 cactacaagaaatatgacattttgccagggattttgacagggg-tttggaacccctggcaaatttgccagggaaaatgccaaggacaacacttggcatat 31519992  T
Q  768 aacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgctacacgcagggcttgaggtgactaaagtag 867  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| ||||||| |||||||||||||    
T  31519993 aacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagagtctgctgcatgca-ggcttgaagtgactaaagtag 31520091  T
Q  868 gtggctgtcaggcaaaacccgagggaatatgccagggaaggcccctgggatgggaaaaaaggtgatgaatcctctgcattgtttcctgttgatttgacaa 967  Q
    |||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31520092 gtggctgtcaggaaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaat-ctctgcattgtttcctgttgatttgacaa 31520190  T
Q  968 ggctctgaaaggcttgtccgggtcagttgagaaaggggc-atacccctcgtttattgcgtg-atccctggctttt 1040  Q
    |||| ||||| || |||||||  ||||||||| |||||| ||||||||||||||||||||| |||||||||||||    
T  31520191 ggctttgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggctttt 31520265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 668 - 1040
Target Start/End: Complemental strand, 17311518 - 17311147
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaaggacaacacctggcatat 767  Q
    |||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17311518 cactacaagaaatatgacattttgccagggattttgacagggg-tttggaacccctgggaaatttgccagggaaaatgccaaggacaacacctggcatat 17311420  T
Q  768 aacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgctacacgcagggcttgaggtgactaaagtag 867  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||| || | || ||| ||||||| |||||||||||||    
T  17311419 aacacaagggtttgccctcacaaaaaccctcacttattgcaaagtgggaaattaaaattcaagaatatggtgcatgca-ggcttgaagtgactaaagtag 17311321  T
Q  868 gtggctgtcaggcaaaacccgagggaatatgccagggaaggcccctgggatgggaaaaaaggtgatgaatcctctgcattgtttcctgttgatttgacaa 967  Q
    |||||||||||||||||  ||||||||||||| ||||||  |||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||    
T  17311320 gtggctgtcaggcaaaaatcgagggaatatgctagggaaaacccctgggataggaaaaaaggtgatgaat-ctctgctttgtttcctgttgatttgacaa 17311222  T
Q  968 ggctctgaaaggcttgtccgggtcagttgagaaaggggc-atacccctcgtttattgcgtg-atccctggctttt 1040  Q
    |||||||||| || |||||||  ||||||||| |||||| |||||||| |||||||||||| |||||||||||||    
T  17311221 ggctctgaaaagcctgtccggtccagttgagacaggggcaataccccttgtttattgcgtgaatccctggctttt 17311147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 2143718 - 2143829
Alignment:
Q  127 tttccaatgacaatagtttataattcaccgtgaaaatgattttgaaatacaacatttaaacatagggcttgagtgatttgtctttaagggaactgatttc 226  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2143718 tttccagtgacaatagtttataattcaccgtgaaaatgattttgaaatacaacatttaaacatagggcttgggtgatttgtctttaagggaactgatttc 2143817  T
Q  227 cctcatgaaaaa 238  Q
    ||||||||||||    
T  2143818 cctcatgaaaaa 2143829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 719 - 784
Target Start/End: Complemental strand, 13338128 - 13338063
Alignment:
Q  719 cccctggcaaatttgccagggaaaatgccaaggacaacacctggcatataacacaagggtttgccc 784  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| | |||||  ||||||||||    
T  13338128 cccctggcaaatttgccagggaaaatgccaaggacaaccgctggcaaaaaacactggggtttgccc 13338063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 719 - 784
Target Start/End: Original strand, 28902876 - 28902941
Alignment:
Q  719 cccctggcaaatttgccagggaaaatgccaaggacaacacctggcatataacacaagggtttgccc 784  Q
    ||||||||||||||| ||||||||||||||||||||||  |||||| | |||||  ||||||||||    
T  28902876 cccctggcaaatttgtcagggaaaatgccaaggacaaccgctggcaaaaaacactggggtttgccc 28902941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 668 - 752
Target Start/End: Original strand, 4968258 - 4968341
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaagga 752  Q
    |||||||||||  ||||| ||||||||| || |||| || ||| ||||  |||||| ||||||||||||||||||||||||||||    
T  4968258 cactacaagaataatgaccttttgccagggattttgtcaaggg-tttgaaacccctcgcaaatttgccagggaaaatgccaagga 4968341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 668 - 739
Target Start/End: Original strand, 20106166 - 20106236
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccaggg 739  Q
    |||||||||||||||||||| ||||||| || ||||||| |||||||   |||||||| |||||||||||||    
T  20106166 cactacaagaaatatgacatattgccagggattttgaca-ggggttttaaacccctgggaaatttgccaggg 20106236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 718 - 756
Target Start/End: Complemental strand, 4449250 - 4449212
Alignment:
Q  718 acccctggcaaatttgccagggaaaatgccaaggacaac 756  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  4449250 acccctggcaaatttgccagggaaaatgccagggacaac 4449212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 718 - 756
Target Start/End: Original strand, 13507591 - 13507629
Alignment:
Q  718 acccctggcaaatttgccagggaaaatgccaaggacaac 756  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  13507591 acccctggcaaatttgccagggaaaatgccagggacaac 13507629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 3e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 668 - 766
Target Start/End: Complemental strand, 7094941 - 7094844
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaaggacaacacctggcata 766  Q
    |||||||||||  ||||| |||||||||| | |||| || ||| ||||  |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  7094941 cactacaagaataatgaccttttgccagaaattttgtcaaggg-tttgaaacccctggcaaatttgccagggaaaatgccaaggacaaccgctggcata 7094844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 666 - 752
Target Start/End: Complemental strand, 37393341 - 37393256
Alignment:
Q  666 tgcactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaagga 752  Q
    |||||||||||||  ||||| ||||||||  || ||||||| ||| |||| |||||||||||||||||||||||||||| |||||||    
T  37393341 tgcactacaagaataatgaccttttgccaaggattttgacaaggg-tttgatacccctggcaaatttgccagggaaaataccaagga 37393256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 668 - 752
Target Start/End: Complemental strand, 4969119 - 4969036
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaagga 752  Q
    |||||||||||  |||||  ||||||||||| ||||||| ||| ||||  ||||||||||||||||||||||||||| |||||||    
T  4969119 cactacaagaataatgaccctttgccagagattttgacaaggg-tttgaaacccctggcaaatttgccagggaaaataccaagga 4969036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 668 - 752
Target Start/End: Complemental strand, 11882285 - 11882202
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaagga 752  Q
    |||||||||||  ||||| ||||||||| || ||||||| ||| |||| ||||||||||||||||| |||||||||| |||||||    
T  11882285 cactacaagaataatgaccttttgccagggattttgacaaggg-tttgatacccctggcaaatttgtcagggaaaataccaagga 11882202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 667 - 752
Target Start/End: Original strand, 35593210 - 35593294
Alignment:
Q  667 gcactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaagga 752  Q
    ||||||||||||  |||||  |||||||| || ||||||| ||| ||||  ||||||||||||||||||||||||||| |||||||    
T  35593210 gcactacaagaataatgaccctttgccagggattttgacaaggg-tttgaaacccctggcaaatttgccagggaaaataccaagga 35593294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 668 - 762
Target Start/End: Original strand, 1696879 - 1696972
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaaggacaacacctgg 762  Q
    |||||||||||| || || ||||||||| || ||||||||||  |||   |||||||| |||| | ||| ||||||||||||||||||| |||||    
T  1696879 cactacaagaaacattaccttttgccagggattttgacagggt-tttaaaacccctggtaaatataccacggaaaatgccaaggacaacccctgg 1696972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 668 - 762
Target Start/End: Complemental strand, 33058117 - 33058024
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaaggacaacacctgg 762  Q
    |||||||||||| || || ||||||||| || ||||||||||  |||   |||||||| |||| | ||| ||||||||||||||||||| |||||    
T  33058117 cactacaagaaacattaccttttgccagggattttgacagggt-tttaaaacccctggtaaatataccacggaaaatgccaaggacaacccctgg 33058024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 719 - 784
Target Start/End: Complemental strand, 2063645 - 2063580
Alignment:
Q  719 cccctggcaaatttgccagggaaaatgccaaggacaacacctggcatataacacaagggtttgccc 784  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| | |||||  ||||||||||    
T  2063645 cccctggcaaatttgccagggaaaatgccaaggacaaccgctggcaaaaaacactggggtttgccc 2063580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 718 - 756
Target Start/End: Complemental strand, 33891937 - 33891899
Alignment:
Q  718 acccctggcaaatttgccagggaaaatgccaaggacaac 756  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  33891937 acccctggcaaatttgccagggaaaatgccagggacaac 33891899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 668 - 766
Target Start/End: Complemental strand, 1347 - 1250
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaaggacaacacctggcata 766  Q
    |||||||||||  ||||| ||||||||| || |||| || ||| ||||  |||||||| |||||||||||||||||||||||||| |||  ||||||||    
T  1347 cactacaagaataatgaccttttgccagggattttgtcaaggg-tttgacacccctggaaaatttgccagggaaaatgccaaggagaactgctggcata 1250  T

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Target: scaffold0573 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 719 - 784
Target Start/End: Complemental strand, 6918 - 6853
Alignment:
Q  719 cccctggcaaatttgccagggaaaatgccaaggacaacacctggcatataacacaagggtttgccc 784  Q
    ||||||||||||||| ||||||||||||||||||||||  |||||| | |||||  ||||||||||    
T  6918 cccctggcaaatttgtcagggaaaatgccaaggacaaccgctggcaaaaaacactggggtttgccc 6853  T

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Target: scaffold0214 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 718 - 756
Target Start/End: Complemental strand, 408 - 370
Alignment:
Q  718 acccctggcaaatttgccagggaaaatgccaaggacaac 756  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  408 acccctggcaaatttgccagggaaaatgccagggacaac 370  T

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Target: scaffold0669 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 668 - 752
Target Start/End: Complemental strand, 6908 - 6825
Alignment:
Q  668 cactacaagaaatatgacattttgccagagaatttgacagggggtttggtacccctggcaaatttgccagggaaaatgccaagga 752  Q
    |||||||||||  |||||  |||||||| || ||||||| ||  ||||  ||||||||||||||||||||||||||| |||||||    
T  6908 cactacaagaataatgaccctttgccagggattttgacaaggt-tttgaaacccctggcaaatttgccagggaaaataccaagga 6825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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