View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507-Insertion-11 (Length: 671)
Name: NF1507-Insertion-11
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507-Insertion-11 |
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Alignment Details
Target: chr8 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 7 - 668
Target Start/End: Complemental strand, 16708719 - 16708061
Alignment:
| Q |
7 |
agggtttgttgaagaagacggcgaagatgatgcaggtgcaggttgatgttgtggataagaagattgggaatgaggttggtgggttaaagaaagaaatgga |
106 |
Q |
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| T |
16708719 |
agggtttgttgaagaagacggcgaagatgatgcaggtgcaggttgatgttgtggataagaagattgggaatgaggttggggggttaaagaaagaaatgga |
16708620 |
T |
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| Q |
107 |
tgcgaaaattgagcaaaaaggcgcgttcttggagaatgagatagagaaattggcgaataagggggataaattggagaggtatttggaggaattgaaggtg |
206 |
Q |
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| T |
16708619 |
tgcgaaaattgagcaaaaaggcgcgttcttggagaatgagataaagaaattggcgaataagggggataaattggagaggtatttggaggaattgaaggtg |
16708520 |
T |
|
| Q |
207 |
gaggatttgttaacaaaggaggagtttgagaaatttgtcgagggtttgaagaatgtgaaggggaatgggtacgagggcggtggtttggatgagataaggg |
306 |
Q |
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| T |
16708519 |
gaggatttgttaacgaaggaggagtttgagaaatttgtcgagggtttgaagaatgtgaaggggaatgggtatgagggcggtggtttggatgagataaggg |
16708420 |
T |
|
| Q |
307 |
agtttgctagaggggtggttgagagcgaaattgagaagcatgctgctgatgggcttgggagggtggattatgctcttggaaacggtggagcctgggttgt |
406 |
Q |
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| T |
16708419 |
agtttgctagaggggtggttgagagcgaaattgagaagcatgctgctgatgggcttgggagggtggattatgctcttgcaaacggtggagcctgggttgt |
16708320 |
T |
|
| Q |
407 |
gagacattcagaggcttatgatgtgcagagggggaattggttcttgttgaatgctagaaatggtgttcatcacaatgctgataagatgttgaaaccagag |
506 |
Q |
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| T |
16708319 |
gagacattcagaggcttatgatgtgcagagggggaattggttcttgttgaatgctagaaatggtgttcatcacaatgctgataagatgttgaaacca-ag |
16708221 |
T |
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| Q |
507 |
ttttggggagcctggacagtgttttccgttgaagtgtagtagcggggtttgttcaaattaggttgcgcgctggaaatcgttcctgaggctgttaccttgg |
606 |
Q |
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| T |
16708220 |
ttttggggagcctggacagtgttttccgttgaagggtagtagc-gggtttgttcaaattaggttgcgcgct-gaaatcgttcctgaggctgttaccttgg |
16708123 |
T |
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| Q |
607 |
aacatgtagcaaaggtgatgccatacatattctttttaactatatacaggtgttgttatctt |
668 |
Q |
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| T |
16708122 |
aacatgtagcaaaggtgatgccatgcatattctttttaactatatacagttgttgttatctt |
16708061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 345 - 458
Target Start/End: Original strand, 40316612 - 40316725
Alignment:
| Q |
345 |
catgctgctgatgggcttgggagggtggattatgctcttggaaacggtggagcctgggttgtgagacattcagaggcttatgatgtgcagagggggaatt |
444 |
Q |
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||||||| |||||||||||||||||||||||||||| ||| |||||||||||| | |||||||||||||| ||||||||||||||| | |||||||| |
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| T |
40316612 |
catgctgttgatgggcttgggagggtggattatgctattgaaaacggtggagcttttgttgtgagacattcggaggcttatgatgtgtggttggggaatt |
40316711 |
T |
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| Q |
445 |
ggttcttgttgaat |
458 |
Q |
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| T |
40316712 |
ggttcttgttgaat |
40316725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 345 - 458
Target Start/End: Original strand, 40326686 - 40326799
Alignment:
| Q |
345 |
catgctgctgatgggcttgggagggtggattatgctcttggaaacggtggagcctgggttgtgagacattcagaggcttatgatgtgcagagggggaatt |
444 |
Q |
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||||||| |||||||||||||||||||||||||||| ||| |||||||||||| | |||||||||||||| ||||||||||||||| | |||||||| |
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| T |
40326686 |
catgctgttgatgggcttgggagggtggattatgctattgaaaacggtggagcttttgttgtgagacattcggaggcttatgatgtgtggttggggaatt |
40326785 |
T |
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| Q |
445 |
ggttcttgttgaat |
458 |
Q |
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|||||||||||||| |
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| T |
40326786 |
ggttcttgttgaat |
40326799 |
T |
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Back To:
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