View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1507-Insertion-12 (Length: 666)

Name: NF1507-Insertion-12
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1507-Insertion-12
NF1507-Insertion-12
[»] chr7 (33 HSPs)
chr7 (7-210)||(47201930-47202133)
chr7 (480-665)||(47202167-47202352)
chr7 (408-474)||(428167-428233)
chr7 (408-474)||(15877080-15877146)
chr7 (408-474)||(19503452-19503518)
chr7 (408-474)||(28501673-28501739)
chr7 (279-329)||(20883777-20883827)
chr7 (411-474)||(29272997-29273059)
chr7 (279-345)||(39226754-39226821)
chr7 (409-467)||(39926132-39926191)
chr7 (408-474)||(39226272-39226338)
chr7 (279-344)||(968703-968768)
chr7 (566-659)||(5226880-5226973)
chr7 (408-476)||(15715908-15715977)
chr7 (279-344)||(31603407-31603472)
chr7 (429-474)||(37476809-37476854)
chr7 (279-344)||(38034927-38034992)
chr7 (556-641)||(46374543-46374628)
chr7 (408-474)||(27275782-27275849)
chr7 (434-476)||(1806485-1806527)
chr7 (280-337)||(19503323-19503381)
chr7 (434-476)||(21920053-21920094)
chr7 (434-476)||(27569633-27569674)
chr7 (434-476)||(40856896-40856937)
chr7 (434-476)||(48460602-48460643)
chr7 (280-345)||(428043-428108)
chr7 (559-620)||(23568266-23568327)
chr7 (429-474)||(23574372-23574417)
chr7 (408-476)||(24812083-24812152)
chr7 (408-476)||(24953262-24953331)
chr7 (280-337)||(15877217-15877276)
chr7 (409-476)||(39558609-39558677)
chr7 (408-467)||(46880200-46880260)
[»] chr3 (26 HSPs)
chr3 (408-474)||(52179293-52179359)
chr3 (409-474)||(19608300-19608365)
chr3 (408-474)||(54830827-54830894)
chr3 (409-471)||(32621351-32621413)
chr3 (408-474)||(41901955-41902021)
chr3 (556-659)||(21963970-21964073)
chr3 (556-659)||(21986406-21986509)
chr3 (279-345)||(43388347-43388413)
chr3 (415-476)||(43745688-43745750)
chr3 (409-474)||(43388477-43388542)
chr3 (415-476)||(1129469-1129531)
chr3 (409-474)||(52458274-52458340)
chr3 (429-474)||(542368-542413)
chr3 (279-344)||(8324524-8324589)
chr3 (280-345)||(32621476-32621541)
chr3 (583-659)||(32876321-32876397)
chr3 (415-476)||(29491667-29491729)
chr3 (415-476)||(40477761-40477823)
chr3 (434-476)||(46936663-46936704)
chr3 (408-476)||(1020979-1021048)
chr3 (408-468)||(40283928-40283989)
chr3 (408-476)||(50247228-50247297)
chr3 (409-474)||(2679751-2679818)
chr3 (409-474)||(8324394-8324461)
chr3 (583-659)||(32878832-32878908)
chr3 (280-337)||(52179157-52179216)
[»] chr4 (27 HSPs)
chr4 (408-483)||(30839577-30839654)
chr4 (408-471)||(34936883-34936946)
chr4 (408-471)||(23390508-23390572)
chr4 (583-659)||(33349894-33349970)
chr4 (279-345)||(24346973-24347039)
chr4 (408-474)||(48058502-48058568)
chr4 (409-474)||(50716237-50716303)
chr4 (409-474)||(54851046-54851112)
chr4 (408-474)||(56272584-56272650)
chr4 (279-344)||(17616611-17616676)
chr4 (279-344)||(45953789-45953854)
chr4 (429-474)||(46548381-46548426)
chr4 (408-476)||(53936846-53936915)
chr4 (409-474)||(16917225-16917292)
chr4 (409-474)||(4540893-4540960)
chr4 (279-345)||(34792084-34792151)
chr4 (408-474)||(40319002-40319069)
chr4 (411-474)||(53452030-53452093)
chr4 (302-344)||(34936777-34936819)
chr4 (434-476)||(40438996-40439037)
chr4 (408-476)||(4720492-4720561)
chr4 (435-476)||(31296881-31296921)
chr4 (435-476)||(39103901-39103941)
chr4 (435-476)||(53973819-53973859)
chr4 (570-654)||(20452550-20452634)
chr4 (411-474)||(25814715-25814779)
chr4 (408-476)||(52607904-52607972)
[»] scaffold0034 (1 HSPs)
scaffold0034 (583-659)||(24208-24284)
[»] chr2 (22 HSPs)
chr2 (408-467)||(22594751-22594810)
chr2 (538-659)||(8804874-8804995)
chr2 (408-465)||(13507585-13507642)
chr2 (409-468)||(29943568-29943628)
chr2 (415-476)||(35896753-35896815)
chr2 (279-344)||(325591-325656)
chr2 (566-659)||(26881358-26881450)
chr2 (279-344)||(36023724-36023789)
chr2 (279-344)||(36430817-36430882)
chr2 (279-344)||(39307148-39307213)
chr2 (279-344)||(44544182-44544247)
chr2 (432-476)||(11598118-11598162)
chr2 (409-474)||(36023594-36023661)
chr2 (415-476)||(4298242-4298304)
chr2 (434-476)||(15362830-15362871)
chr2 (434-476)||(17809390-17809431)
chr2 (408-476)||(6945344-6945413)
chr2 (279-344)||(13118953-13119018)
chr2 (408-476)||(21404532-21404601)
chr2 (408-476)||(45157534-45157603)
chr2 (408-471)||(2639924-2639988)
chr2 (596-652)||(30491118-30491174)
[»] chr1 (22 HSPs)
chr1 (564-659)||(4537662-4537757)
chr1 (408-474)||(28712230-28712297)
chr1 (408-474)||(43025380-43025446)
chr1 (409-474)||(41085509-41085575)
chr1 (409-474)||(41090277-41090343)
chr1 (415-476)||(48977217-48977279)
chr1 (279-344)||(6079796-6079861)
chr1 (586-659)||(17901339-17901412)
chr1 (279-344)||(31210756-31210821)
chr1 (279-344)||(36672066-36672131)
chr1 (280-345)||(42647533-42647598)
chr1 (279-344)||(46152381-46152446)
chr1 (408-474)||(22667596-22667663)
chr1 (434-476)||(7435517-7435558)
chr1 (409-474)||(33196601-33196667)
chr1 (279-344)||(5800052-5800117)
chr1 (408-476)||(24003754-24003823)
chr1 (431-476)||(31075968-31076013)
chr1 (408-476)||(51787802-51787871)
chr1 (409-478)||(6079925-6079996)
chr1 (409-474)||(36671935-36672002)
chr1 (409-474)||(46152501-46152568)
[»] scaffold0286 (1 HSPs)
scaffold0286 (408-474)||(22419-22485)
[»] chr6 (7 HSPs)
chr6 (408-474)||(2197789-2197855)
chr6 (279-345)||(26611605-26611671)
chr6 (409-474)||(32715610-32715676)
chr6 (610-659)||(6229984-6230033)
chr6 (408-476)||(9661756-9661825)
chr6 (275-329)||(10091639-10091693)
chr6 (434-476)||(24248808-24248849)
[»] chr8 (27 HSPs)
chr8 (559-643)||(33075289-33075373)
chr8 (408-474)||(16871897-16871964)
chr8 (408-474)||(24247440-24247507)
chr8 (411-474)||(25698859-25698922)
chr8 (556-639)||(39140573-39140656)
chr8 (408-474)||(32719286-32719352)
chr8 (279-344)||(9178993-9179058)
chr8 (408-476)||(40267481-40267550)
chr8 (432-476)||(2261033-2261077)
chr8 (409-468)||(31940244-31940304)
chr8 (408-474)||(43065259-43065327)
chr8 (412-463)||(13197511-13197562)
chr8 (408-466)||(19725060-19725119)
chr8 (408-474)||(33628369-33628436)
chr8 (279-345)||(13197636-13197701)
chr8 (415-476)||(29454550-29454612)
chr8 (409-474)||(36496480-36496546)
chr8 (408-476)||(117813-117882)
chr8 (279-344)||(25698989-25699054)
chr8 (447-476)||(26439897-26439926)
chr8 (408-476)||(37676271-37676340)
chr8 (408-476)||(41720251-41720320)
chr8 (429-474)||(43460382-43460427)
chr8 (409-474)||(2164758-2164825)
chr8 (279-339)||(12980159-12980219)
chr8 (411-467)||(36035534-36035590)
chr8 (280-337)||(43460494-43460553)
[»] scaffold0014 (1 HSPs)
scaffold0014 (408-474)||(90058-90123)
[»] scaffold0190 (2 HSPs)
scaffold0190 (279-344)||(5903-5968)
scaffold0190 (409-474)||(6032-6099)
[»] chr5 (14 HSPs)
chr5 (408-474)||(231505-231572)
chr5 (279-344)||(14575677-14575742)
chr5 (434-476)||(5204980-5205021)
chr5 (434-476)||(23690862-23690903)
chr5 (434-476)||(28332124-28332166)
chr5 (434-476)||(40756904-40756945)
chr5 (408-476)||(8258396-8258465)
chr5 (408-476)||(9910376-9910445)
chr5 (279-344)||(14721190-14721255)
chr5 (567-659)||(33094593-33094686)
chr5 (408-476)||(33678159-33678228)
chr5 (409-474)||(972156-972223)
chr5 (408-476)||(7456680-7456748)
chr5 (409-474)||(41609092-41609159)
[»] scaffold0008 (1 HSPs)
scaffold0008 (279-344)||(263030-263095)
[»] scaffold0131 (1 HSPs)
scaffold0131 (434-476)||(10673-10714)
[»] scaffold0308 (1 HSPs)
scaffold0308 (408-476)||(7214-7283)
[»] scaffold0059 (2 HSPs)
scaffold0059 (279-344)||(70897-70962)
scaffold0059 (409-474)||(71027-71094)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 47201930 - 47202133
Alignment:
Q  7 aaatgtcagaatcagaatcacgtggttggtgttcgtacagcgtgaagtgaaactatgtactaaaacagaacataaaaggagcgatatgagcgaaaatgaa 106  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47201930 aaatgtcagaatcagaatcacgtggttggtgttcgttcagcgtgaagtgaaactatgtactaaaacagaacataaaaggagcgatatgagcgaaaatgaa 47202029  T
Q  107 ggcaacaaatacaattagaaaaccgtggtgtgtttgttcacagaacacacaataattgacgtgcattaaaatcagacaattatcctccctcatcaaccaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47202030 ggcaacaaatacaattagaaaaccgtggtgtgtttgttcacagaacacacaataattgacgtgcattaaaatcagacaattatcctccttcatcaaccaa 47202129  T
Q  207 tcac 210  Q
    ||||    
T  47202130 tcac 47202133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 480 - 665
Target Start/End: Original strand, 47202167 - 47202352
Alignment:
Q  480 ctaacacttaccatgtaattctttatcggtctttaagcatgctttatgttaatgtggcggtgggtacaagtcatgtcgtccgataggggcctacgaccta 579  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  47202167 ctaacacttaccgtgtaattctttatcggtctttaagcatgctttatgttaatgtagcggtgggtacaagtcatgtcatccgataggggcctacgaccta 47202266  T
Q  580 gcatatttaaagtctagttcggcccagcttgtttaataaaagggtcaggcttaagctttttacaaagtctatttaattaaggagta 665  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  47202267 gcatatttaaagtctagttcggcccagcttgtttaataaaagggtcagacttaagctttttataaagtctatttaattaaggagta 47202352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 428167 - 428233
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||| |||||||||||||||||||| ||| |||||||||||| |||||||||||||||    
T  428167 ctcattaaactattaatttaaatatgggtgtaccagtacactcaaatttttcgagtgtaccatagaa 428233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 15877146 - 15877080
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||||| || ||||||||||||    
T  15877146 ctcattaaactattaatttaaatataggtgtaccggtacactcaaatttttcgaatgtaccatagaa 15877080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 19503452 - 19503518
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||| ||||||||||| ||||||||| || ||||||| |||| |||||||||||||||    
T  19503452 ctcattaaactattaatttaaatataggtgtaccgatacactcaaacttttcgagtgtaccatagaa 19503518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 28501673 - 28501739
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||| || |||||||| |||||| ||||| |||||||||||| |||||||||||||||    
T  28501673 ctcattaaactattaaattaaatataggtgtagcggtacactcaaatttttcgagtgtaccatagaa 28501739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 20883827 - 20883777
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgctt 329  Q
    ||||||| |||| |||||||||||||||||||||||| |||||||||||||    
T  20883827 caatattcactattatgagcaataaaaatttaaaaaatttgaattttgctt 20883777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 474
Target Start/End: Complemental strand, 29273059 - 29272997
Alignment:
Q  411 attaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    |||||||||| |||||||||||  ||||||||||| ||||||| |||| |||||||||||||||    
T  29273059 attaaactattaatttaaatataagtgtaccggtacactcaaa-ttttcgagtgtaccatagaa 29272997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 39226821 - 39226754
Alignment:
Q  279 caatatttactagtatgagcaataaaaat-ttaaaaaagttgaattttgcttcgccaacactcttgag 345  Q
    ||||||| |||| |||||||||||||||  || ||||||||||||||||||||||| ||||| |||||    
T  39226821 caatattcactattatgagcaataaaaaaatttaaaaagttgaattttgcttcgccgacacttttgag 39226754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 409 - 467
Target Start/End: Original strand, 39926132 - 39926191
Alignment:
Q  409 tcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtac 467  Q
    ||||||||||||  |||||| |||||||||||||||||||||||| |||||||| |||||    
T  39926132 tcattaaactatttatttaatatatgggtgtaccggtatactcaatttttttgaatgtac 39926191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 39226338 - 39226272
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||| |||||||||||  |||||||| || |||||||||||| || |||||| |||||    
T  39226338 ctcattaaactattaatttaaatatatgtgtaccgatacactcaaatttttcgaatgtaccttagaa 39226272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 968703 - 968768
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||| ||||||||||||| ||| ||||| ||||    
T  968703 caatattcactattatgagtaataaaaattaaaaaaatttgaattttgctttgccgacacttttga 968768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 659
Target Start/End: Original strand, 5226880 - 5226973
Alignment:
Q  566 gggcctacgacctagcatatttaaagtctagttcggcccagcttgtttaataaaagggtcaggcttaagctttttacaaagtctatttaattaa 659  Q
    |||||||||||||||| ||| ||||| |||| |||||| | || ||||||||||| || ||| || |||||||| | |||| ||||||| ||||    
T  5226880 gggcctacgacctagcctatataaagcctagctcggcctaactcgtttaataaaaaggacagactcaagcttttcataaagcctatttacttaa 5226973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 476
Target Start/End: Complemental strand, 15715977 - 15715908
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| ||||||||||||||| | |||||||||||||| |||||||| |  || |||||||||||||||    
T  15715977 ctcatttaactatgaatttaaagagtgggtgtaccggtacactcaaatatagtgggtgtaccatagaatt 15715908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 31603472 - 31603407
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||| ||||||||||||| ||| ||||| ||||    
T  31603472 caatattcactattatgagtaataaaaattaaaaaaatttgaattttgctttgccgacacttttga 31603407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 429 - 474
Target Start/End: Complemental strand, 37476854 - 37476809
Alignment:
Q  429 atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||    
T  37476854 atatgggtgtaccggtacactcaattttattgagtgtaccatagaa 37476809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 38034927 - 38034992
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||| ||||||||||||| ||| ||||| ||||    
T  38034927 caatattcactattatgagtaataaaaattaaaaaaatttgaattttgctttgccgacacttttga 38034992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 641
Target Start/End: Complemental strand, 46374628 - 46374543
Alignment:
Q  556 cgtccgataggggcctacgacctagcatatttaaagtctagttcggcccagcttgtttaataaaagggtcaggcttaagcttttta 641  Q
    ||||||| ||||||||||   ||||  |||||||||||||| ||||||||||| ||||| ||| | |||||| || ||||||||||    
T  46374628 cgtccgacaggggcctactgtctagtctatttaaagtctagctcggcccagctagtttattaacaaggtcagactcaagcttttta 46374543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 27275849 - 27275782
Alignment:
Q  408 ctcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    |||||||||||||  |||||| |||||||||| | |||| |||||| ||| |||||||||||||||||    
T  27275849 ctcattaaactattcatttaacatatgggtgtgctggtacactcaattttattgagtgtaccatagaa 27275782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 476
Target Start/End: Complemental strand, 1806527 - 1806485
Alignment:
Q  434 ggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||||||||| |||||||| | |||||||||||||||||||    
T  1806527 ggtgtaccggtacactcaaatatattgagtgtaccatagaatt 1806485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 337
Target Start/End: Original strand, 19503323 - 19503381
Alignment:
Q  280 aatatttactagtatgagcaataaaaatttaaaaa-agttgaattttgcttcgccaaca 337  Q
    |||||| |||| ||| || |||||||| ||||||| |||||||||||||||||||||||    
T  19503323 aatattcactattataagtaataaaaaattaaaaatagttgaattttgcttcgccaaca 19503381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 21920053 - 21920094
Alignment:
Q  434 ggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  21920053 ggtgtaccggtacactcaaatttt-tgagtgtaccatagaatt 21920094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 27569633 - 27569674
Alignment:
Q  434 ggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||||||||| ||||||||||||| ||||||||||||||||    
T  27569633 ggtgtaccggtacactcaaatttttt-agtgtaccatagaatt 27569674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 40856896 - 40856937
Alignment:
Q  434 ggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  40856896 ggtgtaccggtatactcaaatttttaga-tgtaccatagaatt 40856937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 48460602 - 48460643
Alignment:
Q  434 ggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  48460602 ggtgtaccggtacactcaaatttt-tgagtgtaccatagaatt 48460643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 428043 - 428108
Alignment:
Q  280 aatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttgag 345  Q
    |||||| |||| |||||| |||||||| || ||||  ||||||||||||||||| ||||| |||||    
T  428043 aatattcactattatgagtaataaaaaattcaaaattttgaattttgcttcgccgacacttttgag 428108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 620
Target Start/End: Original strand, 23568266 - 23568327
Alignment:
Q  559 ccgataggggcctacgacctagcatatttaaagtctagttcggcccagcttgtttaataaaa 620  Q
    |||| ||||||||| | |||||| ||||||||| ||| |||| ||||||| |||||||||||    
T  23568266 ccgacaggggcctatggcctagcctatttaaagcctatttcgacccagctcgtttaataaaa 23568327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 474
Target Start/End: Complemental strand, 23574417 - 23574372
Alignment:
Q  429 atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    |||| |||||| ||||| |||||||||||| |||||||||||||||    
T  23574417 atataggtgtagcggtacactcaaatttttcgagtgtaccatagaa 23574372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 476
Target Start/End: Complemental strand, 24812152 - 24812083
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| |||||| |||||||| | || ||||||||||| |||||||| |  ||||||||||||||||||    
T  24812152 ctcatttaactataaatttaaagagtgagtgtaccggtacactcaaatatagtgagtgtaccatagaatt 24812083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 476
Target Start/End: Original strand, 24953262 - 24953331
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| ||||||||||||||| | || ||||||||||| |||||||| |  || |||||||||||||||    
T  24953262 ctcatttaactatgaatttaaagagtgagtgtaccggtacactcaaatatagtgggtgtaccatagaatt 24953331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 15877276 - 15877217
Alignment:
Q  280 aatatttactagtatgagcaataaaaatttaaaaaa--gttgaattttgcttcgccaaca 337  Q
    |||||| |||| ||| || |||||||| ||||||||  ||||||||||||||||||||||    
T  15877276 aatattcactattataagtaataaaaaattaaaaaaaagttgaattttgcttcgccaaca 15877217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 476
Target Start/End: Complemental strand, 39558677 - 39558609
Alignment:
Q  409 tcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    ||||| ||||||||||||||| | |||||||||||||| ||| |||| |  || |||||||||||||||    
T  39558677 tcatttaactatgaatttaaagaatgggtgtaccggtacacttaaatatagtgggtgtaccatagaatt 39558609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 467
Target Start/End: Original strand, 46880200 - 46880260
Alignment:
Q  408 ctcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtac 467  Q
    |||||||||||||  |||||| ||||||||||||||||  |||||| || |||||||||||    
T  46880200 ctcattaaactatttatttaatatatgggtgtaccggtgcactcaatttgtttgagtgtac 46880260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 52179293 - 52179359
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||| ||||||||||| |||||||| ||| |||||||||||| |||||||||||||||    
T  52179293 ctcattaaactattaatttaaatataggtgtaccagtacactcaaatttttcgagtgtaccatagaa 52179359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 19608365 - 19608300
Alignment:
Q  409 tcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    |||||||||||| ||||||||||| |||||||||||| | |||||||||| |||||||||||||||    
T  19608365 tcattaaactattaatttaaatataggtgtaccggtacattcaaatttttcgagtgtaccatagaa 19608300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 54830894 - 54830827
Alignment:
Q  408 ctcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    |||||||||||||  |||||| |||||||||||||||||||||||| ||| |||||||||||||||||    
T  54830894 ctcattaaactattcatttaatatatgggtgtaccggtatactcaattttattgagtgtaccatagaa 54830827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 409 - 471
Target Start/End: Complemental strand, 32621413 - 32621351
Alignment:
Q  409 tcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccata 471  Q
    |||||||||||| ||||||||||||||||||||| || |||||| ||||| ||||||||||||    
T  32621413 tcattaaactattaatttaaatatgggtgtaccgatacactcaactttttcgagtgtaccata 32621351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 41902021 - 41901955
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||| || |||||||| |||||| ||||| |||||||||||| |||||||||||||||    
T  41902021 ctcattaaactattaaattaaatataggtgtagcggtacactcaaatttttcgagtgtaccatagaa 41901955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 659
Target Start/End: Original strand, 21963970 - 21964073
Alignment:
Q  556 cgtccgataggggcctacgacctagcatatttaaagtctagttcggcccagcttgtttaataaaagggtcaggcttaagctttttacaaagtctatttaa 655  Q
    ||||||| ||||||||||| |||||| ||||||||| |||  ||||||||||| ||||| ||| | || |||||| |||||||||| ||   ||||||||    
T  21963970 cgtccgacaggggcctacggcctagcctatttaaagcctaactcggcccagctcgtttattaacaaggccaggctcaagctttttataagacctatttaa 21964069  T
Q  656 ttaa 659  Q
    ||||    
T  21964070 ttaa 21964073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 659
Target Start/End: Original strand, 21986406 - 21986509
Alignment:
Q  556 cgtccgataggggcctacgacctagcatatttaaagtctagttcggcccagcttgtttaataaaagggtcaggcttaagctttttacaaagtctatttaa 655  Q
    ||||||| ||||||||||| |||||| ||||||||| |||  ||||||||||| ||||| ||| | || |||||| |||||||||| ||   ||||||||    
T  21986406 cgtccgacaggggcctacggcctagcctatttaaagcctaactcggcccagctcgtttattaacaaggccaggctcaagctttttataagacctatttaa 21986505  T
Q  656 ttaa 659  Q
    ||||    
T  21986506 ttaa 21986509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 43388347 - 43388413
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttgag 345  Q
    ||||||| |||| |||||| ||||||||  ||||||||||||||||||||||||||| ||| |||||    
T  43388347 caatattcactattatgagtaataaaaaactaaaaaagttgaattttgcttcgccaaaacttttgag 43388413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 415 - 476
Target Start/End: Original strand, 43745688 - 43745750
Alignment:
Q  415 aactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| |||||||| | ||||||||||||||||||||||| | |||||||||||||||||||    
T  43745688 aactattaatttaaagagtgggtgtaccggtatactcaaatatattgagtgtaccatagaatt 43745750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 409 - 474
Target Start/End: Original strand, 43388477 - 43388542
Alignment:
Q  409 tcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    |||||||||||| ||||||||||| | |||||||| | |||||||||||| |||||| ||||||||    
T  43388477 tcattaaactattaatttaaatatagttgtaccggcacactcaaatttttcgagtgtgccatagaa 43388542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 476
Target Start/End: Original strand, 1129469 - 1129531
Alignment:
Q  415 aactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| |||||||| | |||||||||||||| |||||||| | |||||||||||||||||||    
T  1129469 aactattaatttaaagagtgggtgtaccggtacactcaaatgtattgagtgtaccatagaatt 1129531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 474
Target Start/End: Original strand, 52458274 - 52458340
Alignment:
Q  409 tcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||  |||||| ||||||||||| ||||| |||||| ||||||||||||||| |||||    
T  52458274 tcattaaactatttatttaatatatgggtgtagcggtacactcaatttttttgagtgtaccgtagaa 52458340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 429 - 474
Target Start/End: Complemental strand, 542413 - 542368
Alignment:
Q  429 atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||    
T  542413 atatgggtgtaccggtacactcaattttattgagtgtaccatagaa 542368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 8324589 - 8324524
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||| ||||||||||||| ||| ||||| ||||    
T  8324589 caatattcactattatgagtaataaaaattaaaaaaatttgaattttgctttgccgacacttttga 8324524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 280 - 345
Target Start/End: Complemental strand, 32621541 - 32621476
Alignment:
Q  280 aatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttgag 345  Q
    ||||||||||| |||||| |||||||| || ||||  ||||||||||||||||| ||||| |||||    
T  32621541 aatatttactattatgagtaataaaaaattcaaaattttgaattttgcttcgccgacacttttgag 32621476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 659
Target Start/End: Original strand, 32876321 - 32876397
Alignment:
Q  583 tatttaaagtctagttcggcccagcttgtttaataaaagggtcaggcttaagctttttacaaagtctatttaattaa 659  Q
    |||||||||||||  | || ||||||  |||||||||| ||||||||| ||| |||||| |||||||||||| ||||    
T  32876321 tatttaaagtctaacttggtccagctcatttaataaaaaggtcaggctcaagttttttataaagtctatttagttaa 32876397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 476
Target Start/End: Complemental strand, 29491729 - 29491667
Alignment:
Q  415 aactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| |||||||| | |||||||||||||| |||||||| | ||| |||||||||||||||    
T  29491729 aactattaatttaaagagtgggtgtaccggtacactcaaatatattgggtgtaccatagaatt 29491667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 476
Target Start/End: Complemental strand, 40477823 - 40477761
Alignment:
Q  415 aactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| |||||||| | |||||||||||||| |||||||| | ||| |||||||||||||||    
T  40477823 aactattaatttaaagagtgggtgtaccggtacactcaaatatattgggtgtaccatagaatt 40477761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 476
Target Start/End: Complemental strand, 46936704 - 46936663
Alignment:
Q  434 ggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||||||||| |||||||||||||| |||||||||||||||    
T  46936704 ggtgtaccggtacactcaaattttttg-gtgtaccatagaatt 46936663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 476
Target Start/End: Complemental strand, 1021048 - 1020979
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| ||||||||||||||| | || ||||||||||| |||||||| |  || |||||||||||||||    
T  1021048 ctcatttaactatgaatttaaaaagtgagtgtaccggtacactcaaatatagtgggtgtaccatagaatt 1020979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 468
Target Start/End: Complemental strand, 40283989 - 40283928
Alignment:
Q  408 ctcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtacc 468  Q
    |||||||||||||  |||||| ||||||||||||||||  |||||| |||||||| ||||||    
T  40283989 ctcattaaactatttatttaatatatgggtgtaccggtgcactcaatttttttgaatgtacc 40283928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 476
Target Start/End: Complemental strand, 50247297 - 50247228
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| |||||| |||||||| | |||||||||||||| |||||||| | ||| ||||||||| |||||    
T  50247297 ctcatttaactattaatttaaagagtgggtgtaccggtacactcaaatatattgggtgtaccatggaatt 50247228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 474
Target Start/End: Original strand, 2679751 - 2679818
Alignment:
Q  409 tcattaaactatgaatttaaatat--gggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||  |||||||||   ||||||||||||| ||||||| || | |||||||||||||||    
T  2679751 tcattaaactattcatttaaatacacgggtgtaccggtacactcaaaattatcgagtgtaccatagaa 2679818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 8324461 - 8324394
Alignment:
Q  409 tcattaaactatgaatttaaata--tgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||  |||||||||  |||||||||||| | ||||||| || | |||||||||||||||    
T  8324461 tcattaaactattcatttaaatacatgggtgtaccgggacactcaaaattatcgagtgtaccatagaa 8324394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 583 - 659
Target Start/End: Original strand, 32878832 - 32878908
Alignment:
Q  583 tatttaaagtctagttcggcccagcttgtttaataaaagggtcaggcttaagctttttacaaagtctatttaattaa 659  Q
    |||||||||||||  | || ||||||  |||||||||| ||||||||| ||| |||||| |||| ||||||| ||||    
T  32878832 tatttaaagtctaacttggtccagctcatttaataaaaaggtcaggctcaagttttttataaagcctatttagttaa 32878908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 337
Target Start/End: Original strand, 52179157 - 52179216
Alignment:
Q  280 aatatttactagtatgagcaataaaaatttaaaa--aagttgaattttgcttcgccaaca 337  Q
    |||||| |||| ||| || |||||||| ||||||  ||||||||||||||||||||||||    
T  52179157 aatattcactattataagtaataaaaaattaaaaaaaagttgaattttgcttcgccaaca 52179216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 408 - 483
Target Start/End: Original strand, 30839577 - 30839654
Alignment:
Q  408 ctcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatag-aattgccctaa 483  Q
    |||||||||||||  |||||| ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||    
T  30839577 ctcattaaactattcatttaacatatgggtgtaccggtacactcaaatttattgagtgtaccatagaaattgccctaa 30839654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 408 - 471
Target Start/End: Original strand, 34936883 - 34936946
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccata 471  Q
    ||||||||||||| ||||||||||| ||||||| |||| |||||||||||| || |||||||||    
T  34936883 ctcattaaactattaatttaaatataggtgtacaggtacactcaaatttttcgaatgtaccata 34936946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 471
Target Start/End: Complemental strand, 23390572 - 23390508
Alignment:
Q  408 ctcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccata 471  Q
    |||||||||||||  |||||| ||||||||||||||||| |||||| ||| ||||||||||||||    
T  23390572 ctcattaaactattcatttaatatatgggtgtaccggtacactcaattttattgagtgtaccata 23390508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 659
Target Start/End: Complemental strand, 33349970 - 33349894
Alignment:
Q  583 tatttaaagtctagttcggcccagcttgtttaataaaagggtcaggcttaagctttttacaaagtctatttaattaa 659  Q
    ||||||||||||| ||| ||||| ||| |||||||||| ||||||||| |||||| ||| ||||  |||||||||||    
T  33349970 tatttaaagtctaattcagcccaacttatttaataaaaaggtcaggctcaagcttcttataaagcttatttaattaa 33349894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 24347039 - 24346973
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttgag 345  Q
    ||||||| |||| |||||| |||||||||  |||||| ||||||||||||| ||||||||| |||||    
T  24347039 caatattcactattatgagtaataaaaataaaaaaaaattgaattttgctttgccaacacttttgag 24346973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 48058568 - 48058502
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||| || |||||||| |||||| | ||| |||||| ||||| |||||||||||||||    
T  48058568 ctcattaaactattaaattaaatataggtgtagcagtacactcaagtttttcgagtgtaccatagaa 48058502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 50716303 - 50716237
Alignment:
Q  409 tcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||  |||||| ||||||||||||||||| |||||| |||||| |||||||| |||||    
T  50716303 tcattaaactattcatttaatatatgggtgtaccggtacactcaatttttttaagtgtaccgtagaa 50716237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 54851112 - 54851046
Alignment:
Q  409 tcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||  |||||| |||||||||||| |||| |||||| ||||||||||||||| |||||    
T  54851112 tcattaaactattcatttaatatatgggtgtactggtacactcaatttttttgagtgtaccgtagaa 54851046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 56272650 - 56272584
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    |||||||||| || || |||||||| |||||| | ||| |||||||||||| |||||||||||||||    
T  56272650 ctcattaaacaattaaattaaatataggtgtagcagtacactcaaatttttcgagtgtaccatagaa 56272584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 17616611 - 17616676
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||| ||||||||||||| ||| ||||| ||||    
T  17616611 caatattcactattatgagtaataaaaattaaaaaaatttgaattttgctttgccgacacttttga 17616676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 45953854 - 45953789
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||| ||||||||||||| ||| ||||| ||||    
T  45953854 caatattcactattatgagtaataaaaattaaaaaaatttgaattttgctttgccgacacttttga 45953789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 429 - 474
Target Start/End: Complemental strand, 46548426 - 46548381
Alignment:
Q  429 atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||||||| |||||| ||||||||||||||| |||||    
T  46548426 atatgggtgtaccggtacactcaatttttttgagtgtaccgtagaa 46548381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 476
Target Start/End: Original strand, 53936846 - 53936915
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| |||||| |||||||| | |||||||||||||| |||||||| | ||| |||||||||||||||    
T  53936846 ctcatttaactattaatttaaagaatgggtgtaccggtacactcaaatatattgggtgtaccatagaatt 53936915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 16917292 - 16917225
Alignment:
Q  409 tcattaaactatgaatttaaatat--gggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||  ||||||||||  ||||||||| ||| ||||||| || |||||||||||||||||    
T  16917292 tcattaaactattcatttaaatatacgggtgtaccagtacactcaaaattattgagtgtaccatagaa 16917225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 409 - 474
Target Start/End: Original strand, 4540893 - 4540960
Alignment:
Q  409 tcattaaactatgaatttaa-atatgggtgtaccggtatactcaa-attttttgagtgtaccatagaa 474  Q
    ||||||||||||  |||||| ||||||||||||||||| ||||||  ||||||||||||||| |||||    
T  4540893 tcattaaactattcatttaatatatgggtgtaccggtacactcaattttttttgagtgtaccgtagaa 4540960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 34792084 - 34792151
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaa-aaagttgaattttgcttcgccaacactcttgag 345  Q
    ||||||| |||| |||||| |||||||||  ||| ||||||||||||||||| ||||||||| |||||    
T  34792084 caatattcactattatgagtaataaaaataaaaataaagttgaattttgctttgccaacacttttgag 34792151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 40319069 - 40319002
Alignment:
Q  408 ctcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    |||||||||||||  |||||| ||||||||||||| ||| |||||| ||| |||| ||||||||||||    
T  40319069 ctcattaaactattcatttaatatatgggtgtaccagtacactcaattttattgaatgtaccatagaa 40319002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 474
Target Start/End: Original strand, 53452030 - 53452093
Alignment:
Q  411 attaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||| || ||||||||||| |||| ||||||| ||| |||||||| ||||||| |||||||    
T  53452030 attaaacaattaatttaaatataggtgcaccggtacacttaaatttttcgagtgtatcatagaa 53452093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 344
Target Start/End: Original strand, 34936777 - 34936819
Alignment:
Q  302 aaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||    
T  34936777 aaaaattaaaaaaagttgaattttgcttcgacaacacttttga 34936819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 40438996 - 40439037
Alignment:
Q  434 ggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  40438996 ggtgtaccggtacactcaaatttt-tgagtgtaccatagaatt 40439037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 476
Target Start/End: Complemental strand, 4720561 - 4720492
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| ||||||||||||||| | ||||| |||||||| |||||||| |  || |||||||||||||||    
T  4720561 ctcatttaactatgaatttaaagagtgggtctaccggtacactcaaatatcgtgggtgtaccatagaatt 4720492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 476
Target Start/End: Original strand, 31296881 - 31296921
Alignment:
Q  435 gtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    ||||||||||| ||||||||||||| ||||||||||||||||    
T  31296881 gtgtaccggtacactcaaatttttt-agtgtaccatagaatt 31296921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 476
Target Start/End: Original strand, 39103901 - 39103941
Alignment:
Q  435 gtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  39103901 gtgtaccggtacactcaaatttt-tgagtgtaccatagaatt 39103941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 476
Target Start/End: Original strand, 53973819 - 53973859
Alignment:
Q  435 gtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  53973819 gtgtaccggtacactcaaatttt-tgagtgtaccatagaatt 53973859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 570 - 654
Target Start/End: Original strand, 20452550 - 20452634
Alignment:
Q  570 ctacgacctagcatatttaaagtctagttcggcccagcttgtttaataaaagggtcaggcttaagctttttacaaagtctattta 654  Q
    |||||||| ||| |||||||||||||  || || ||||| ||||| ||| |   ||||||| |||||||||| ||||||||||||    
T  20452550 ctacgaccgagcctatttaaagtctaactcagctcagctcgtttattaacaatatcaggctcaagctttttataaagtctattta 20452634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 411 - 474
Target Start/End: Original strand, 25814715 - 25814779
Alignment:
Q  411 attaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||  |||||| ||||||||||||||||| |||||| ||| | || ||||||||||||    
T  25814715 attaaactattcatttaacatatgggtgtaccggtacactcaattttatcgaatgtaccatagaa 25814779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 476
Target Start/End: Original strand, 52607904 - 52607972
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| |||||| |||||||  |||| ||||||||||||||||||| | ||  ||||| |||||||||    
T  52607904 ctcatttaactattaatttaataatggatgtaccggtatactcaaatatgtttggtgtatcatagaatt 52607972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 583 - 659
Target Start/End: Original strand, 24208 - 24284
Alignment:
Q  583 tatttaaagtctagttcggcccagcttgtttaataaaagggtcaggcttaagctttttacaaagtctatttaattaa 659  Q
    |||||||||||||| | ||||||||||||||||||||| ||||||||| |||||||||| ||| | |||||| ||||    
T  24208 tatttaaagtctagcttggcccagcttgtttaataaaaaggtcaggctcaagctttttataaaatttatttagttaa 24284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 408 - 467
Target Start/End: Complemental strand, 22594810 - 22594751
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtac 467  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||||| ||||||||    
T  22594810 ctcattaaactattaatttaaatataggtgtaccggtacactcaaatttttcgagtgtac 22594751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 659
Target Start/End: Complemental strand, 8804995 - 8804874
Alignment:
Q  538 ggtgggtacaagtcatgtcgtccgataggggcctacgacctagcatatttaaagtctagttcggcccagcttgtttaataaaagggtcaggcttaagctt 637  Q
    |||||| ||| |||| ||||| ||| |||||||||||||||||  |||||||||||||| ||||| |||||  |||| ||| | || ||| || || |||    
T  8804995 ggtgggaacatgtcaggtcgttcgaaaggggcctacgacctagtctatttaaagtctagctcggctcagctcatttattaacaaggacagactcaaactt 8804896  T
Q  638 tttacaaagtctatttaattaa 659  Q
    |||| |||  ||||||||||||    
T  8804895 tttataaaacctatttaattaa 8804874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 408 - 465
Target Start/End: Original strand, 13507585 - 13507642
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgt 465  Q
    |||||||||||||  |||||||||| ||| |||||||| |||||||||||||||||||    
T  13507585 ctcattaaactattcatttaaatataggtataccggtacactcaaattttttgagtgt 13507642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 409 - 468
Target Start/End: Complemental strand, 29943628 - 29943568
Alignment:
Q  409 tcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtacc 468  Q
    ||||||||||||  |||||| ||||||||||||||||| |||||| |||||||||||||||    
T  29943628 tcattaaactattcatttaatatatgggtgtaccggtacactcaatttttttgagtgtacc 29943568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 476
Target Start/End: Original strand, 35896753 - 35896815
Alignment:
Q  415 aactatgaatttaaa-tatgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| |||||||| | |||||||||||||| |||||||| | |||||||||||||||||||    
T  35896753 aactattaatttaaagtgtgggtgtaccggtacactcaaatatattgagtgtaccatagaatt 35896815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 325656 - 325591
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||| ||||||||||||| ||| ||||| ||||    
T  325656 caatattcactattatgagtaataaaaattaaaaaaatttgaattttgctttgccgacacttttga 325591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 659
Target Start/End: Complemental strand, 26881450 - 26881358
Alignment:
Q  566 gggcctacgacctagcatatttaaagtctagttcggcccagcttgtttaataaaagggtcaggcttaagctttttacaaagtctatttaattaa 659  Q
    |||||||||||| ||| ||||||||| |||||| ||| ||||| |||||||||||  || ||||| |||||||||| |||   |||||||||||    
T  26881450 gggcctacgaccaagcctatttaaag-ctagtttggctcagctcgtttaataaaaaagttaggctcaagctttttataaatcttatttaattaa 26881358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 36023789 - 36023724
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||| ||||||||||||| ||| ||||| ||||    
T  36023789 caatattcactattatgagtaataaaaattaaaaaaatttgaattttgctttgccgacacttttga 36023724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 36430817 - 36430882
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| ||||||||||| ||||| ||||||||||||| ||| ||||| ||||    
T  36430817 caatattcactattatgagtaataaaaattttaaaaatttgaattttgctttgccgacacttttga 36430882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 39307213 - 39307148
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||| ||||||||||||| ||| ||||| ||||    
T  39307213 caatattcactattatgagtaataaaaattaaaaaaatttgaattttgctttgccgacacttttga 39307148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 44544247 - 44544182
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||| ||||||||||||| ||| ||||| ||||    
T  44544247 caatattcactattatgagtaataaaaattaaaaaaaattgaattttgctttgccgacacttttga 44544182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 432 - 476
Target Start/End: Complemental strand, 11598162 - 11598118
Alignment:
Q  432 tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    ||||||||||  || ||||||||||||||||||||||||||||||    
T  11598162 tgggtgtaccaatacactcaaattttttgagtgtaccatagaatt 11598118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 36023661 - 36023594
Alignment:
Q  409 tcattaaactatgaatttaaatat--gggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||  |||||||||   ||||||||||||| ||||||| || |||||||||||||||||    
T  36023661 tcattaaactattcatttaaatacacgggtgtaccggtacactcaaaattattgagtgtaccatagaa 36023594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 476
Target Start/End: Original strand, 4298242 - 4298304
Alignment:
Q  415 aactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| |||||||| | |||||||||||||| |||||||| | |||||||||||||| ||||    
T  4298242 aactattaatttaaagaatgggtgtaccggtacactcaaatatattgagtgtaccataaaatt 4298304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 15362830 - 15362871
Alignment:
Q  434 ggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  15362830 ggtgtaccggtacactcaaatttt-tgagtgtaccatagaatt 15362871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 17809390 - 17809431
Alignment:
Q  434 ggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  17809390 ggtgtaccggtacactcaaatttt-tgagtgtaccatagaatt 17809431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 476
Target Start/End: Complemental strand, 6945413 - 6945344
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| |||||| |||||||| | |||||||||||||| |||||||| | |||  ||||||||||||||    
T  6945413 ctcatttaactattaatttaaaaaatgggtgtaccggtacactcaaatatattggatgtaccatagaatt 6945344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 13119018 - 13118953
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||  ||||||||||||| ||| ||||| ||||    
T  13119018 caatattcactattatgagtaataaaaattaaaaaattttgaattttgctttgccgacacttttga 13118953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 476
Target Start/End: Original strand, 21404532 - 21404601
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| ||||||||||||||||| || ||||| ||||| |||||||| |  || |||||||||||||||    
T  21404532 ctcatttaactatgaatttaaatagtgagtgtatcggtacactcaaatatagtgggtgtaccatagaatt 21404601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 476
Target Start/End: Complemental strand, 45157603 - 45157534
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| ||| || |||||||| | |||||||||||||| |||||||| | ||| |||||||||||||||    
T  45157603 ctcatttaaccattaatttaaagagtgggtgtaccggtacactcaaatatattgggtgtaccatagaatt 45157534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 471
Target Start/End: Complemental strand, 2639988 - 2639924
Alignment:
Q  408 ctcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccata 471  Q
    |||||||||||||  |||||| |||||||||||||  || |||||| ||| ||||||||||||||    
T  2639988 ctcattaaactattcatttaacatatgggtgtacctatacactcaattttattgagtgtaccata 2639924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 596 - 652
Target Start/End: Complemental strand, 30491174 - 30491118
Alignment:
Q  596 gttcggcccagcttgtttaataaaagggtcaggcttaagctttttacaaagtctatt 652  Q
    |||||||| | ||||||||||||| | |||| |||| ||||||||| ||||||||||    
T  30491174 gttcggcctaacttgtttaataaatgagtcaagcttgagctttttaaaaagtctatt 30491118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 564 - 659
Target Start/End: Complemental strand, 4537757 - 4537662
Alignment:
Q  564 aggggcctacgacctagcatatttaaagtctagttcggcccagcttgtttaataaaagggtcaggcttaagctttttacaaagtctatttaattaa 659  Q
    ||||||||||| |||||| ||||||||| |||  | |||||||| ||||||||||||  |||||||  |||||||||| |||||||||||| ||||    
T  4537757 aggggcctacgtcctagcctatttaaagcctaacttggcccagcctgtttaataaaaaagtcaggcacaagctttttataaagtctatttacttaa 4537662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 28712230 - 28712297
Alignment:
Q  408 ctcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    |||||||||||||  |||||| ||||| |||||||||||||||||| ||| |||||||||||||||||    
T  28712230 ctcattaaactattcatttaacatatgagtgtaccggtatactcaattttattgagtgtaccatagaa 28712297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 43025380 - 43025446
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||| ||||||||||||  |||||||||||| ||||||||||  | ||||||||||||    
T  43025380 ctcattaaactattaatttaaatatgaatgtaccggtatattcaaatttttctaatgtaccatagaa 43025446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 41085575 - 41085509
Alignment:
Q  409 tcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||  |||||| |||||| |||||||||| |||||| ||| |||||||||||||||||    
T  41085575 tcattaaactattcatttaacatatggatgtaccggtacactcaattttattgagtgtaccatagaa 41085509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 41090343 - 41090277
Alignment:
Q  409 tcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||  |||||| |||||| |||||||||| |||||| ||| |||||||||||||||||    
T  41090343 tcattaaactattcatttaacatatggatgtaccggtacactcaattttattgagtgtaccatagaa 41090277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 476
Target Start/End: Original strand, 48977217 - 48977279
Alignment:
Q  415 aactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| |||||||| | |||||||||||||| |||||||| | |||||||||||||||||||    
T  48977217 aactattaatttaaagagtgggtgtaccggtacactcaaatatattgagtgtaccatagaatt 48977279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 6079796 - 6079861
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| ||||||||||||||||| || |||||||||| ||| ||||| ||||    
T  6079796 caatattcactattatgagtaataaaaatttaaaaaaattaaattttgctttgccgacacttttga 6079861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 586 - 659
Target Start/End: Complemental strand, 17901412 - 17901339
Alignment:
Q  586 ttaaagtctagttcggcccagcttgtttaataaaagggtcaggcttaagctttttacaaagtctatttaattaa 659  Q
    |||||||||||||||||||| || ||||||||| | ||  || || |||||||||| |||| ||||||||||||    
T  17901412 ttaaagtctagttcggcccaactcgtttaataagaaggctagactgaagctttttataaagcctatttaattaa 17901339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 31210821 - 31210756
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||| ||||||||||||| ||| ||||| ||||    
T  31210821 caatattcactattatgagtaataaaaattaaaaaaatttgaattttgctttgccgacacttttga 31210756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 36672131 - 36672066
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||| ||||||||||||| ||| ||||| ||||    
T  36672131 caatattcactattatgagtaataaaaattaaaaaaaattgaattttgctttgccgacacttttga 36672066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 280 - 345
Target Start/End: Complemental strand, 42647598 - 42647533
Alignment:
Q  280 aatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttgag 345  Q
    |||||| |||| |||||| |||||||| || ||||| ||||||||||||||||| ||||| |||||    
T  42647598 aatattcactattatgagtaataaaaaattcaaaaatttgaattttgcttcgccgacacttttgag 42647533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 46152381 - 46152446
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||| ||||||||||||| ||| ||||| ||||    
T  46152381 caatattcactattatgagtaataaaaattaaaaaaatttgaattttgctttgccgacacttttga 46152446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 22667596 - 22667663
Alignment:
Q  408 ctcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    |||||||||||||  | |||| |||||||||||| |||| |||||| ||| |||||||||||||||||    
T  22667596 ctcattaaactattcaattaacatatgggtgtactggtacactcaattttattgagtgtaccatagaa 22667663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 476
Target Start/End: Complemental strand, 7435558 - 7435517
Alignment:
Q  434 ggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||||||||| |||||||||||| |||||||||||||||||    
T  7435558 ggtgtaccggtacactcaaattttt-gagtgtaccatagaatt 7435517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 474
Target Start/End: Original strand, 33196601 - 33196667
Alignment:
Q  409 tcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||  |||||| |||||| |||||||||| |||||| ||| ||||| |||||||||||    
T  33196601 tcattaaactatttatttaacatatggatgtaccggtacactcaattttattgagcgtaccatagaa 33196667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 5800117 - 5800052
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| || ||| ||||||||||||| ||| ||||| ||||    
T  5800117 caatattcactattatgagtaataaaaattaaagaaaattgaattttgctttgccgacacttttga 5800052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 476
Target Start/End: Original strand, 24003754 - 24003823
Alignment:
Q  408 ctcattaaactatgaatttaaat-atgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| |||||||||||||||| ||| ||||||||||| |||||||| |  ||  ||||||||||||||    
T  24003754 ctcatttaactatgaatttaaataatgagtgtaccggtacactcaaatatagtggatgtaccatagaatt 24003823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 476
Target Start/End: Original strand, 31075968 - 31076013
Alignment:
Q  431 atgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    ||||||||||||||| |||||||| | ||| |||||||||||||||    
T  31075968 atgggtgtaccggtacactcaaatatattgggtgtaccatagaatt 31076013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 476
Target Start/End: Original strand, 51787802 - 51787871
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| |||||| |||||||| | |||||||||||||| |||||||| | |||  ||||||||||||||    
T  51787802 ctcatttaactattaatttaaagaatgggtgtaccggtacactcaaatatattggatgtaccatagaatt 51787871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 478
Target Start/End: Original strand, 6079925 - 6079996
Alignment:
Q  409 tcattaaactatgaatttaaatat--gggtgtaccggtatactcaaattttttgagtgtaccatagaattgc 478  Q
    ||||||||||||  |||||||||   ||||||||||| | ||| ||| || |||||||||||||||||||||    
T  6079925 tcattaaactattcatttaaatacacgggtgtaccgggacacttaaaattattgagtgtaccatagaattgc 6079996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 36672002 - 36671935
Alignment:
Q  409 tcattaaactatgaatttaaatat--gggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||  |||||||||   ||||||||||||| ||||||| || | |||||||||||||||    
T  36672002 tcattaaactattcatttaaatacacgggtgtaccggtacactcaaaattatcgagtgtaccatagaa 36671935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 474
Target Start/End: Original strand, 46152501 - 46152568
Alignment:
Q  409 tcattaaactatgaatttaaatat--gggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||  |||||||||   ||||||||||||| ||||||| || | |||||||||||||||    
T  46152501 tcattaaactattcatttaaatacacgggtgtaccggtacactcaaaattatcgagtgtaccatagaa 46152568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 22419 - 22485
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||| ||||||||||||||||||  |||| |||||||||||| |||||||| ||||||    
T  22419 ctcattaaactattaatttaaatatgggtgtattggtacactcaaatttttcgagtgtacaatagaa 22485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 2197855 - 2197789
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||| ||||||||||||||||||  |||| |||||||||||| |||||||| ||||||    
T  2197855 ctcattaaactattaatttaaatatgggtgtattggtacactcaaatttttcgagtgtacaatagaa 2197789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 26611671 - 26611605
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttgag 345  Q
    ||||||| |||| |||||| |||||||||  |||||| ||||||||||||| ||||||||| |||||    
T  26611671 caatattcactattatgagtaataaaaatcaaaaaaatttgaattttgctttgccaacacttttgag 26611605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 32715676 - 32715610
Alignment:
Q  409 tcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||  |||||| |||||| |||||||||| |||||| |||||||| ||||||||||||    
T  32715676 tcattaaactattcatttaatatatggatgtaccggtacactcaatttttttgaatgtaccatagaa 32715610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 659
Target Start/End: Original strand, 6229984 - 6230033
Alignment:
Q  610 gtttaataaaagggtcaggcttaagctttttacaaagtctatttaattaa 659  Q
    ||||||||||||||||| ||| |||||||||| |||| ||||||||||||    
T  6229984 gtttaataaaagggtcacgctaaagctttttataaagcctatttaattaa 6230033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 476
Target Start/End: Complemental strand, 9661825 - 9661756
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| |||||| |||||||| | |||||||||||||| |||||||| | ||| |||||||||||||||    
T  9661825 ctcatttaactattaatttaaagaatgggtgtaccggtacactcaaatatattgggtgtaccatagaatt 9661756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 275 - 329
Target Start/End: Complemental strand, 10091693 - 10091639
Alignment:
Q  275 taaccaatatttactagtatgagcaataaaaatttaaaaaagttgaattttgctt 329  Q
    ||||||||||| |||| |||||| || ||||||| |||||| |||||||||||||    
T  10091693 taaccaatattcactattatgagtaacaaaaattaaaaaaatttgaattttgctt 10091639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 476
Target Start/End: Complemental strand, 24248849 - 24248808
Alignment:
Q  434 ggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||||||||| |||||||||||| |||||||||||||||||    
T  24248849 ggtgtaccggtacactcaaattttt-gagtgtaccatagaatt 24248808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 559 - 643
Target Start/End: Original strand, 33075289 - 33075373
Alignment:
Q  559 ccgataggggcctacgacctagcatatttaaagtctagttcggcccagcttgtttaataaaagggtcaggcttaagctttttaca 643  Q
    |||| ||||||||| ||| |||| || ||||||||||| |||| ||||||  |||||||||| ||||||||| ||||||||||||    
T  33075289 ccgacaggggcctatgacttagcctacttaaagtctagctcggtccagctcatttaataaaaaggtcaggctcaagctttttaca 33075373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 16871897 - 16871964
Alignment:
Q  408 ctcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    |||||||||||||  |||||| ||||||||||||||||| |||||| ||| |||||||||||||||||    
T  16871897 ctcattaaactattcatttaacatatgggtgtaccggtacactcaattttattgagtgtaccatagaa 16871964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 24247507 - 24247440
Alignment:
Q  408 ctcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    |||||||||||||  |||||| ||||||||||||||||| |||||| ||| |||||||||||||||||    
T  24247507 ctcattaaactattcatttaacatatgggtgtaccggtacactcaattttattgagtgtaccatagaa 24247440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 411 - 474
Target Start/End: Complemental strand, 25698922 - 25698859
Alignment:
Q  411 attaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    |||||||||| ||||||||||| |||| ||||||| ||||||||||||  ||||||||||||||    
T  25698922 attaaactattaatttaaatataggtgcaccggtacactcaaatttttcaagtgtaccatagaa 25698859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 639
Target Start/End: Original strand, 39140573 - 39140656
Alignment:
Q  556 cgtccgataggggcctacgacctagcatatttaaagtctagttcggcccagcttgtttaataaaagggtcaggcttaagctttt 639  Q
    ||||||| | |||| ||| ||||||||||||||||| ||| |||||||||  ||||||||||||| |||||| || ||||||||    
T  39140573 cgtccgacatgggcttacaacctagcatatttaaagcctaattcggcccaatttgtttaataaaaaggtcagactcaagctttt 39140656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 32719286 - 32719352
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||| ||| |||||||||||||||| || |||| ||| ||||||||  ||||||||||||||    
T  32719286 ctcattaaattattaatttaaatatgggtgcacaggtacacttaaatttttcaagtgtaccatagaa 32719352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 9178993 - 9179058
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||| ||||||||||||| ||| ||||| ||||    
T  9178993 caatattcactattatgagtaataaaaattaaaaaaatttgaattttgctttgccgacacttttga 9179058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 476
Target Start/End: Complemental strand, 40267550 - 40267481
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| ||||||||||||||| | |||||||||||||| |||||||| |  || |||||||||||||||    
T  40267550 ctcatttaactatgaatttaaagagtgggtgtaccggtacactcaaatatagtgggtgtaccatagaatt 40267481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 432 - 476
Target Start/End: Complemental strand, 2261077 - 2261033
Alignment:
Q  432 tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||||||||||| |||||||| | |||||||||||||||||||    
T  2261077 tgggtgtaccggtacactcaaatatattgagtgtaccatagaatt 2261033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 468
Target Start/End: Complemental strand, 31940304 - 31940244
Alignment:
Q  409 tcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtacc 468  Q
    ||||||||||||  |||||| |||| |||||||||||| ||| ||||||||||||||||||    
T  31940304 tcattaaactattcatttaatatataggtgtaccggtacacttaaattttttgagtgtacc 31940244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 43065259 - 43065327
Alignment:
Q  408 ctcattaaactatgaatttaa-atatgggtgtaccggtatactcaaatttt-ttgagtgtaccatagaa 474  Q
    |||||||||||||  |||||| ||||||||||||||||| |||||| |||| ||||||||||| |||||    
T  43065259 ctcattaaactattcatttaacatatgggtgtaccggtacactcaatttttattgagtgtaccgtagaa 43065327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 463
Target Start/End: Complemental strand, 13197562 - 13197511
Alignment:
Q  412 ttaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagt 463  Q
    |||||||||  ||||||| ||||||||||||||| ||||||||||| |||||    
T  13197562 ttaaactattcatttaaacatgggtgtaccggtacactcaaattttgtgagt 13197511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 466
Target Start/End: Complemental strand, 19725119 - 19725060
Alignment:
Q  408 ctcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgta 466  Q
    ||||||||||||| ||||||| |||| |||||||||||| |||||| ||| |||||||||    
T  19725119 ctcattaaactattaatttaatatataggtgtaccggtacactcaattttgttgagtgta 19725060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 33628436 - 33628369
Alignment:
Q  408 ctcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    |||||||||||||  |||||| |||||||||||||| || |||||| ||| |||| ||||||||||||    
T  33628436 ctcattaaactattcatttaacatatgggtgtaccgatacactcaattttattgaatgtaccatagaa 33628369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 13197701 - 13197636
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttgag 345  Q
    ||||||| |||| |||||| |||||||||||| ||||||||||||||| || ||| ||||| |||||    
T  13197701 caatattcactattatgagtaataaaaattta-aaaagttgaattttgatttgccgacacttttgag 13197636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 476
Target Start/End: Original strand, 29454550 - 29454612
Alignment:
Q  415 aactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| |||||||| | |||||||||||||| |||||||| | ||| |||||||||||||||    
T  29454550 aactattaatttaaagagtgggtgtaccggtacactcaaatatattgggtgtaccatagaatt 29454612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 474
Target Start/End: Original strand, 36496480 - 36496546
Alignment:
Q  409 tcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||  |||||| |||| |||||||||||| | |||| ||||||||||||||| |||||    
T  36496480 tcattaaactattcatttaatatataggtgtaccggtacattcaatttttttgagtgtaccgtagaa 36496546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 476
Target Start/End: Complemental strand, 117882 - 117813
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| ||||||||||||||| | || ||||||||||| |||||||| |  || |||||||||||||||    
T  117882 ctcatttaactatgaatttaaagagtgagtgtaccggtacactcaaatatagtgggtgtaccatagaatt 117813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 25699054 - 25698989
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||| || ||||| || |||||||||||| ||||||| ||||    
T  25699054 caatattcactattatgagtaataaaaaatttaaaaaattaaattttgcttcgacaacacttttga 25698989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 476
Target Start/End: Original strand, 26439897 - 26439926
Alignment:
Q  447 actcaaattttttgagtgtaccatagaatt 476  Q
    ||||||||||||||||||||||||||||||    
T  26439897 actcaaattttttgagtgtaccatagaatt 26439926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 476
Target Start/End: Original strand, 37676271 - 37676340
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| ||||||||||||||| | || ||||||||||| |||||||| |  || |||||||||||||||    
T  37676271 ctcatttaactatgaatttaaagagtgagtgtaccggtacactcaaatatagtgggtgtaccatagaatt 37676340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 476
Target Start/End: Complemental strand, 41720320 - 41720251
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| ||||||||||||||| | ||||||||||| || |||||||| |  || |||||||||||||||    
T  41720320 ctcatttaactatgaatttaaagagtgggtgtaccgatacactcaaatatagtgggtgtaccatagaatt 41720251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 474
Target Start/End: Complemental strand, 43460427 - 43460382
Alignment:
Q  429 atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    |||| |||||| ||||| |||||||||||| |||||||||||||||    
T  43460427 atataggtgtagcggtacactcaaatttttcgagtgtaccatagaa 43460382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 2164825 - 2164758
Alignment:
Q  409 tcattaaactatgaatttaaatat--gggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||  |||||||||   || |||||||||| ||||||| || |||||||||||||||||    
T  2164825 tcattaaactattcatttaaatacacggatgtaccggtacactcaaaattattgagtgtaccatagaa 2164758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 12980219 - 12980159
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacact 339  Q
    ||||||| |||| |||||| |||||||||| |||||| | ||||||||||| ||| |||||    
T  12980219 caatattcactattatgagtaataaaaattaaaaaaactagaattttgctttgccgacact 12980159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 411 - 467
Target Start/End: Complemental strand, 36035590 - 36035534
Alignment:
Q  411 attaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtac 467  Q
    |||||||||| ||||||||||| |||| ||| ||| ||| |||||||| ||||||||    
T  36035590 attaaactattaatttaaatataggtgcaccagtacacttaaatttttcgagtgtac 36035534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 43460553 - 43460494
Alignment:
Q  280 aatatttactagtatgagcaataaaaatttaaaaaa--gttgaattttgcttcgccaaca 337  Q
    |||||| |||| ||| || |||||||| ||||||||  ||||||||||||||||||||||    
T  43460553 aatattcactattataagtaataaaaaattaaaaaaaagttgaattttgcttcgccaaca 43460494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 90123 - 90058
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||||||||||||||||||    
T  90123 ctcattaaactatgaatttaaatat-ggtgtaccggtacactcaagaaatttgagtgtaccatagaa 90058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 5903 - 5968
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||| ||||||||||||||||| ||||| ||||    
T  5903 caatattcactattatgagtaataaaaattaaaaaaatttgaattttgcttcgccgacacttttga 5968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 474
Target Start/End: Original strand, 6032 - 6099
Alignment:
Q  409 tcattaaactatgaatttaaatat--gggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    |||||||| |||  ||||||||||  ||||||||||||| ||||||| || | |||||||||||||||    
T  6032 tcattaaattattcatttaaatataagggtgtaccggtacactcaaaattatcgagtgtaccatagaa 6099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 231572 - 231505
Alignment:
Q  408 ctcattaaactatgaatttaa-atatgggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||| ||||||| |||||| |||||| ||| |||||| ||| |||||||||||||||||    
T  231572 ctcattaaactattaatttaatatatggatgtaccagtacactcaattttattgagtgtaccatagaa 231505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 14575677 - 14575742
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||| ||||||||||||| ||| ||||| ||||    
T  14575677 caatattcactattatgagtaataaaaattaaaaaaatttgaattttgctttgccgacacttttga 14575742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 5204980 - 5205021
Alignment:
Q  434 ggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  5204980 ggtgtaccggtacactcaaatttt-tgagtgtaccatagaatt 5205021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 23690862 - 23690903
Alignment:
Q  434 ggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||||||||| ||||||||||||| ||||||||||||||||    
T  23690862 ggtgtaccggtacactcaaatttttt-agtgtaccatagaatt 23690903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 476
Target Start/End: Complemental strand, 28332166 - 28332124
Alignment:
Q  434 ggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    ||||||||  || ||||||||||||||||||||||||||||||    
T  28332166 ggtgtaccaatacactcaaattttttgagtgtaccatagaatt 28332124  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 476
Target Start/End: Original strand, 40756904 - 40756945
Alignment:
Q  434 ggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  40756904 ggtgtaccggtacactcaaatttt-tgagtgtaccatagaatt 40756945  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 476
Target Start/End: Complemental strand, 8258465 - 8258396
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| ||||||||||||||| | || ||||||||||| |||||||| |  || |||||||||||||||    
T  8258465 ctcatttaactatgaatttaaagagtgcgtgtaccggtacactcaaatatagtgggtgtaccatagaatt 8258396  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 476
Target Start/End: Original strand, 9910376 - 9910445
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| ||||||||||||||| | || ||||||||||| |||||||| |  || |||||||||||||||    
T  9910376 ctcatttaactatgaatttaaagagtgagtgtaccggtacactcaaatatagtgggtgtaccatagaatt 9910445  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 14721255 - 14721190
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| ||| |||||| |||||| ||||||||||||| ||| ||||| ||||    
T  14721255 caatattcactattatgagtaatgaaaattaaaaaaaattgaattttgctttgccgacacttttga 14721190  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 659
Target Start/End: Original strand, 33094593 - 33094686
Alignment:
Q  567 ggcctacgacctagcatatttaaagtctagttcggcccagcttgtttaataaaagggtcaggcttaagc-tttttacaaagtctatttaattaa 659  Q
    |||||||||| |||| ||||||||| |||| ||  |||| || ||||||||||| ||| || || || | ||||||| ||||||||||||||||    
T  33094593 ggcctacgacatagcctatttaaagcctagatcaacccaactcgtttaataaaaaggttagactaaaacttttttacgaagtctatttaattaa 33094686  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 476
Target Start/End: Complemental strand, 33678228 - 33678159
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| ||||||||||||||| | || ||||||||||| |||||||| |  || |||||||||||||||    
T  33678228 ctcatttaactatgaatttaaagagtgagtgtaccggtacactcaaatatagtgggtgtaccatagaatt 33678159  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 972223 - 972156
Alignment:
Q  409 tcattaaactatgaatttaaatat--gggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||  |||||||||   ||||||||||||| ||||||| || | |||||||||||||||    
T  972223 tcattaaactattcatttaaatacacgggtgtaccggtacactcaaaattatcgagtgtaccatagaa 972156  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 476
Target Start/End: Original strand, 7456680 - 7456748
Alignment:
Q  408 ctcattaaactatgaatttaaatatgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    ||||||||||||| ||||||||||||  | |||| ||| ||||||||||||  |||||| |||| ||||    
T  7456680 ctcattaaactattaatttaaatatgaatataccagtacactcaaatttttcaagtgtatcatataatt 7456748  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 41609159 - 41609092
Alignment:
Q  409 tcattaaactatgaatttaaatat--gggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||  |||||||||   ||||||||||||| ||||||| || | |||||||||||||||    
T  41609159 tcattaaactatttatttaaatacacgggtgtaccggtacactcaaaattatcgagtgtaccatagaa 41609092  T

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Target: scaffold0008 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 263030 - 263095
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||| ||||||||||||| ||| ||||| ||||    
T  263030 caatattcactattatgagtaataaaaattaaaaaaatttgaattttgctttgccgacacttttga 263095  T

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Target: scaffold0131 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 476
Target Start/End: Complemental strand, 10714 - 10673
Alignment:
Q  434 ggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||||||||| ||||||||||||| ||||||||||||||||    
T  10714 ggtgtaccggtacactcaaatttttt-agtgtaccatagaatt 10673  T

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Target: scaffold0308 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 476
Target Start/End: Complemental strand, 7283 - 7214
Alignment:
Q  408 ctcattaaactatgaatttaaata-tgggtgtaccggtatactcaaattttttgagtgtaccatagaatt 476  Q
    |||||| ||||||||||||||| | || ||||||||||| |||||||| |  || |||||||||||||||    
T  7283 ctcatttaactatgaatttaaagagtgagtgtaccggtacactcaaatataatgggtgtaccatagaatt 7214  T

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Target: scaffold0059 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 70897 - 70962
Alignment:
Q  279 caatatttactagtatgagcaataaaaatttaaaaaagttgaattttgcttcgccaacactcttga 344  Q
    ||||||| |||| |||||| |||||||||| |||||  ||||||||||||| ||| ||||| ||||    
T  70897 caatattcactattatgagtaataaaaattaaaaaattttgaattttgctttgccgacacttttga 70962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 474
Target Start/End: Original strand, 71027 - 71094
Alignment:
Q  409 tcattaaactatgaatttaaatat--gggtgtaccggtatactcaaattttttgagtgtaccatagaa 474  Q
    ||||||||||||  |||||||||   ||||||||||||| ||||||| || | |||||||||||||||    
T  71027 tcattaaactattcatttaaatacacgggtgtaccggtacactcaaaattatcgagtgtaccatagaa 71094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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