View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507-Insertion-13 (Length: 660)
Name: NF1507-Insertion-13
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507-Insertion-13 |
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| [»] chr1 (6 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 251 - 660
Target Start/End: Original strand, 48591668 - 48592078
Alignment:
| Q |
251 |
taaatagtagaaaataaataaataattttgattggtgtcaaattacgt--ataactctactcactttattgataggtaaataagagttatcatttcttta |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48591668 |
taaatagtagaaaataaataaataattttgattggtgtcaaatcacgtgtataactctactcactttattgataggtaaataagagttgtcatttcttta |
48591767 |
T |
|
| Q |
349 |
cttggtgccaaagtgtatatttttgttatacgattcactatcgnnnnnnncggtagggtatactttgaaaagttattaacagttatccaaaatataacgc |
448 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
48591768 |
cttggtgccaaagtgtatatttttgttatacgattcactatcgaaaaaa-cggtagggcatactttgaaaagttattaacagttatccaaaatataaggc |
48591866 |
T |
|
| Q |
449 |
catgcatataagtttgattcacaacacttctcaattgtgcattcaaaacgaataaaccaatatgatttcccattccttctcattagctatgattttgctc |
548 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48591867 |
catgcatataagtttgaatcacaacacttctcaattgtgcattcaaagtgaataaaccaatatgatttcccattccttctcattagctatgattttgctc |
48591966 |
T |
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| Q |
549 |
ctatttcttttcatttttcagcttctctcttacttaaagagaaacaagaagtcgcatgcacgattaccacctcaccctccaagtccaccagcaataccaa |
648 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48591967 |
ctatttcttttcatttttcagcttctctcttacttaaagagaaacaagaagttgcatgcacgattaccacctcaccctccaagtccaccagcaataccaa |
48592066 |
T |
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| Q |
649 |
taattggacatc |
660 |
Q |
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|||||||||||| |
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| T |
48592067 |
taattggacatc |
48592078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 251 - 660
Target Start/End: Original strand, 48601363 - 48601773
Alignment:
| Q |
251 |
taaatagtagaaaataaataaataattttgattggtgtcaaattacgt--ataactctactcactttattgataggtaaataagagttatcatttcttta |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48601363 |
taaatagtagaaaataaataaataattttgattggtgtcaaatcacgtgtataactctactcactttattgataggtaaataagagttgtcatttcttta |
48601462 |
T |
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| Q |
349 |
cttggtgccaaagtgtatatttttgttatacgattcactatcgnnnnnnncggtagggtatactttgaaaagttattaacagttatccaaaatataacgc |
448 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
48601463 |
cttggtgccaaagtgtatatttttgttatacgattcactatcgaaaaaa-cggtagggcatactttgaaaagttattaacagttatccaaaatataaggc |
48601561 |
T |
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| Q |
449 |
catgcatataagtttgattcacaacacttctcaattgtgcattcaaaacgaataaaccaatatgatttcccattccttctcattagctatgattttgctc |
548 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48601562 |
catgcatataagtttgaatcacaacacttctcaattgtgcattcaaagtgaataaaccaatatgatttcccattccttctcattagctatgattttgctc |
48601661 |
T |
|
| Q |
549 |
ctatttcttttcatttttcagcttctctcttacttaaagagaaacaagaagtcgcatgcacgattaccacctcaccctccaagtccaccagcaataccaa |
648 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48601662 |
ctatttcttttcatttttcagcttctctcttacttaaagagaaacaagaagttgcatgcacgattaccacctcaccctccaagtccaccagcaataccaa |
48601761 |
T |
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| Q |
649 |
taattggacatc |
660 |
Q |
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|||||||||||| |
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| T |
48601762 |
taattggacatc |
48601773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 12 - 495
Target Start/End: Original strand, 48597016 - 48597484
Alignment:
| Q |
12 |
atttgataaattggtgatgaggtatgaagattgatatagataaaataaggtgttaaataaataaatgagaatatcatatgcacaaatattattgttgatt |
111 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
48597016 |
atttgataaattggtgatgaggtatgaagatagatatagataaaataaggtgttaaataaataaataagaatatcatatgcataaatattattgttgatt |
48597115 |
T |
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| Q |
112 |
ttttaacaatttttctatggaactaaatactatatattttttagatggcaattgcaacaaaaggttggtagtgttaccacttaccaatgtaatcaaagtt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
48597116 |
ttttaacaatttttctatggaactaaatactatatattatttagatggcaattgcaacaaaaggttggtagtg-------ttaccaatgtaatcaaaatt |
48597208 |
T |
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| Q |
212 |
atttatttatcttttaccatgtatgtcatatctataacataaatagtagaaaataaataaataattttgattggtgtcaaattac--gtataactctact |
309 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
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| T |
48597209 |
atttatttatcttttatcttgtatgtcatatctataacataaatagtagaaaataaataaataaatttgattggtgtcaaatcacgtgtataactctact |
48597308 |
T |
|
| Q |
310 |
cactttattgataggtaaataagagttatcatttctttacttggtgccaaagtgtatatttttgttatacgattcactatcgnnnnnnncggtagggtat |
409 |
Q |
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|||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |
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| T |
48597309 |
cactttattg---------taagagatgtcatttctttacttggtgccaaagtgtatatttttgttatacaattcactatcg-aaaaaacggtagggcat |
48597398 |
T |
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| Q |
410 |
actttgaaaagttattaacagttatccaaaatataacgccatgcatataagtttgattcacaacacttctcaattgtgcattcaaa |
495 |
Q |
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| T |
48597399 |
actttgaaaatttattaacggttatccaaaatataacgccatgcatataagtttgattcacaacacttctcaattgtgcattcaaa |
48597484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 26532813 - 26532768
Alignment:
| Q |
246 |
taacataaatagtagaaaataaataaataattttgattggtgtcaa |
291 |
Q |
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|||||||| |||||||| | |||||||||||||||||||||||||| |
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| T |
26532813 |
taacataagtagtagaagacaaataaataattttgattggtgtcaa |
26532768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 15882690 - 15882735
Alignment:
| Q |
246 |
taacataaatagtagaaaataaataaataattttgattggtgtcaa |
291 |
Q |
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||||||||||| ||||| | |||||||| ||||||||||||||||| |
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| T |
15882690 |
taacataaataatagaagacaaataaatgattttgattggtgtcaa |
15882735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 49197444 - 49197488
Alignment:
| Q |
244 |
tataacataaatagtagaaaataaataaataattttgattggtgt |
288 |
Q |
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||||||||||||||| ||| ||||||| || |||||||||||||| |
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| T |
49197444 |
tataacataaatagtggaagataaatatatgattttgattggtgt |
49197488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 490 - 660
Target Start/End: Complemental strand, 23232421 - 23232254
Alignment:
| Q |
490 |
ttcaaaacgaataaaccaatatgatttcccattccttctcattagctatgattttgctcctatttcttttcatttttcagcttctctcttacttaaagag |
589 |
Q |
| |
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|||||| | |||||| ||| |||||||| |||||||||| ||||||||||||| ||||||| |||||||| || | | ||| |||| ||| ||||| |
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| T |
23232421 |
ttcaaagctaataaaacaagatgatttctcattccttcttattagctatgattgtgctccttcttcttttccttctcccacttttctccgtctttaagag |
23232322 |
T |
|
| Q |
590 |
aaacaagaagtcgcatgcacgattaccacctcaccctccaagtccaccagcaataccaataattggacatc |
660 |
Q |
| |
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||||||||| || || ||| ||||| ||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
23232321 |
aaacaagaaatcacaaccacatttacc-cct--ccctccaagtccaccaacaataccaataattggacatc |
23232254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 660
Target Start/End: Complemental strand, 23224964 - 23224921
Alignment:
| Q |
617 |
acctcaccctccaagtccaccagcaataccaataattggacatc |
660 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||| |||| |
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| T |
23224964 |
accttaccctccaagtccactagcaataccaataattggtcatc |
23224921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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