View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1507-Insertion-15 (Length: 626)

Name: NF1507-Insertion-15
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1507-Insertion-15
NF1507-Insertion-15
[»] chr3 (1 HSPs)
chr3 (8-626)||(38612074-38612698)


Alignment Details
Target: chr3 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 8 - 626
Target Start/End: Complemental strand, 38612698 - 38612074
Alignment:
Q  8 aatttctatgtaaaaacaaagataacatatgattaacgagttgcttacaaattagaatcgcatagttacgccaatacgtcattaacgtaatcagcaaatc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38612698 aatttctatgtaaaaacaaagataacatatgattaacgagttgcttacaaattagaatcgcatagttacgccaatacgtcattaacgtaatcagcaaatc 38612599  T
Q  108 tcatttacagagagaacaaatgaaaacaacctatgcctcctccatgggttctggttcaggttcaggttcaggttccggcgctggtgcttgcgcttg---- 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||        
T  38612598 tcatttacagagagaacaaatgaaaacaacctatgcctcctccatgggttctggttctggttcaggttcaggttccggcgctggtgcttgcgcttgcgct 38612499  T
Q  204 --agcttcaacgtcgcctccagactttcggaagatctgatcgatgcggcgagtaccaaccggaacggatttaggccgatccacaaccgccgctggtttat 301  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38612498 tgagcttcaacgtcgcctccagactttcggaagatctgatcgatgcggcgagtaccaaccgaaacggatttaggccgatccacaaccgccgctggtttat 38612399  T
Q  302 cagatttcacagtttcagacggcaccggaagcgaatcgagtagaaaatcacttattggacggtttctcttcaccgcgattctcatatgttcaagcttcac 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38612398 cagatttcacagtttcagacggcaccggaagcgaatcgagtagaaaatcacttattggacggtttctcttcaccgcgattctcatatgttcaagcttcac 38612299  T
Q  402 cgtcttgcgcttcttctcaatagcaacttccgcagacttttcagcaagtaactgtnnnnnnngctccgtagaccgtgacaccaagaacaacgcttctgaa 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| |||||||||    
T  38612298 cgtcttgcgcttcttctcaatagcaacttccgcagacttttcagcaagtaactgtaaaaaaagctccgtagaccgtgacaccaagaacaaagcttctgaa 38612199  T
Q  502 ctcaccctcttcacgtctttgtccagagtgattatcttcttcactctactcttcggaaactctggttcagacgacagcgttttctcttcttcttcaccca 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38612198 ctcaccctcttcacgtctttgtccagagtgattatcttcttcactctactcttcggaaactctggttcaaacgacagcgttttctcttcttcttcaccca 38612099  T
Q  602 taaccgtaacaattacaattcccaa 626  Q
    |||||||| ||||||||||||||||    
T  38612098 taaccgtagcaattacaattcccaa 38612074  T

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