View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1507-Insertion-16 (Length: 630)

Name: NF1507-Insertion-16
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1507-Insertion-16
NF1507-Insertion-16
[»] chr7 (2 HSPs)
chr7 (8-88)||(30505909-30505989)
chr7 (153-227)||(30506052-30506126)
[»] chr6 (4 HSPs)
chr6 (8-88)||(7033764-7033844)
chr6 (8-80)||(7038072-7038144)
chr6 (153-227)||(7033625-7033699)
chr6 (153-227)||(7037925-7037999)
[»] chr4 (4 HSPs)
chr4 (8-88)||(1541062-1541142)
chr4 (8-88)||(1545360-1545440)
chr4 (153-227)||(1540923-1540997)
chr4 (153-227)||(1545221-1545295)
[»] chr1 (6 HSPs)
chr1 (8-88)||(26400695-26400775)
chr1 (8-88)||(26404993-26405073)
chr1 (8-88)||(28914338-28914418)
chr1 (153-232)||(28914194-28914273)
chr1 (153-227)||(26404854-26404928)
chr1 (153-227)||(26400556-26400630)
[»] chr5 (4 HSPs)
chr5 (8-88)||(17793184-17793264)
chr5 (8-88)||(17797482-17797562)
chr5 (153-227)||(17793045-17793119)
chr5 (153-227)||(17797343-17797417)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 30505909 - 30505989
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaat 88  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30505909 aaacgtacaaatagaaaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaat 30505989  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 30506052 - 30506126
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcggttctaaacacaatagctaaca 227  Q
    |||||||||| ||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||    
T  30506052 atatttaaaagattcaaaacagaagtaaaataaactctgcagacgtggcagcagttctaaacacaatagctaaca 30506126  T

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Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 7033844 - 7033764
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaat 88  Q
    |||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||    
T  7033844 aaacgtacaaatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaat 7033764  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 7038144 - 7038072
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccac 80  Q
    |||| |||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  7038144 aaacgtacaaatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccac 7038072  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 7033699 - 7033625
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcggttctaaacacaatagctaaca 227  Q
    |||||||||||||||||||||||| |||||| |||||   | |||||||||| |||||||||||||||| |||||    
T  7033699 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 7033625  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 7037999 - 7037925
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcggttctaaacacaatagctaaca 227  Q
    |||||||||||||||||||||||| |||||| |||||   | |||||||||| |||||||||||||||| |||||    
T  7037999 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 7037925  T

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Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 1541142 - 1541062
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaat 88  Q
    |||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||    
T  1541142 aaacgtacaaatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaat 1541062  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 1545440 - 1545360
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaat 88  Q
    |||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||    
T  1545440 aaacgtacaaatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaat 1545360  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 1540997 - 1540923
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcggttctaaacacaatagctaaca 227  Q
    ||||||||||||||||||| |||| |||||| ||||| | | |||||||||| |||||||||||||||| |||||    
T  1540997 atatttaaaatattcaaaatagaattaaaatgaactcaacaaacgtggcagcagttctaaacacaatagttaaca 1540923  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 1545295 - 1545221
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcggttctaaacacaatagctaaca 227  Q
    |||||||||||||||||||||||| |||||| |||||   | |||||||||| |||||||||||||||| |||||    
T  1545295 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 1545221  T

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Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 26400775 - 26400695
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaat 88  Q
    |||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||    
T  26400775 aaacgtacaaatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaat 26400695  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 26405073 - 26404993
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaat 88  Q
    |||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||    
T  26405073 aaacgtacaaatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaat 26404993  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 28914418 - 28914338
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaat 88  Q
    |||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||    
T  28914418 aaacgtacaaatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaat 28914338  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 28914273 - 28914194
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcggttctaaacacaatagctaacaaaaac 232  Q
    |||||||||||||||||||||||| |||||| |||||   | |||||||||| |||||||||||||||| ||||| ||||    
T  28914273 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaacagaaac 28914194  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 26404928 - 26404854
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcggttctaaacacaatagctaaca 227  Q
    |||||||||||||||||||||||| |||||| |||||   | |||||||||| |||||||||||||||| |||||    
T  26404928 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 26404854  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 26400630 - 26400556
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcggttctaaacacaatagctaaca 227  Q
    ||||||||||||||||||| |||| |||||| |||||   | |||||||||| |||||||||||||||| |||||    
T  26400630 atatttaaaatattcaaaatagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 26400556  T

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Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 17793264 - 17793184
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaat 88  Q
    |||| |||||||||| |||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |||||    
T  17793264 aaacgtacaaatagaaaagtacagaatagacaataactgcccactaatatcatgttcctataagttaggccacgatagaat 17793184  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 17797562 - 17797482
Alignment:
Q  8 aaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaat 88  Q
    |||| |||||||||| |||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |||||    
T  17797562 aaacgtacaaatagaaaagtacagaatagacaataactgcccactaatatcatgttcctataagttaggccacgatagaat 17797482  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 17793119 - 17793045
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcggttctaaacacaatagctaaca 227  Q
    |||||||||||||||||||||||| |||||| |||||   | |||||||||| |||||||||||||||| |||||    
T  17793119 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 17793045  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 17797417 - 17797343
Alignment:
Q  153 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcggttctaaacacaatagctaaca 227  Q
    |||||||||||||||||||||||| |||||| |||||   | |||||||||| |||||||||||||||| |||||    
T  17797417 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 17797343  T

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