View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507-Insertion-18 (Length: 581)
Name: NF1507-Insertion-18
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507-Insertion-18 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 9e-90; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 232 - 418
Target Start/End: Complemental strand, 10501901 - 10501717
Alignment:
| Q |
232 |
gaagaaaacttgggttcctttctagtaattatatttagttaatcacctttggttgaaaaggtcaaacaagtcatcaatcaaatgcatcccaaaaagtaga |
331 |
Q |
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| T |
10501901 |
gaagaaaacttgggttcctttctagcaattatatttagttaatcacctttggttgaaaaggtcaaacaagtcatcaatcaaatgcatcccaacaagtaga |
10501802 |
T |
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| Q |
332 |
cattttatcagaatttttggacacatgttatggccatgacgtgtttggctagagcatgacatccttccaccaaattttagtgataca |
418 |
Q |
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| T |
10501801 |
cattttatcagaatttttggacacatgttatggccatgacgtgtttggctagagcatgacat--ttccaccaaattttagtgataca |
10501717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 10502103 - 10501901
Alignment:
| Q |
13 |
tacataaaataaccacaatcaaagatacaagtgacatgtgcttaagaaactcaaattttgccatgaatttcatgaagcacaaaggaacctatgaacttat |
112 |
Q |
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| T |
10502103 |
tacataaaataagcacaatcaaagacacaagtgacatgtgcctaagaagctcaaatttttccatgaatttcatgaagcacaaaggaacctgtgaacttat |
10502004 |
T |
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| Q |
113 |
atgatatgatcataatatcaaaaaattgaagttatagccgaatatgtttattgtttaataaacttg------aaatcatatattattcttttgtttggtg |
206 |
Q |
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| T |
10502003 |
atgatatgatcataatatcaaaaaattgaagttatagccgaatatgtttattgtttaataaacttgatcgctaaatcatatattattcttttgtttagtg |
10501904 |
T |
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| Q |
207 |
agg |
209 |
Q |
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| T |
10501903 |
agg |
10501901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 10507385 - 10507270
Alignment:
| Q |
8 |
tgtagtacataaaataaccacaatcaaagatacaagtgacatgtgcttaagaaactcaaattttgccatgaatttcatgaagc-acaaaggaacctatga |
106 |
Q |
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|||| ||||||||| || ||||||||||| ||||||| |||||| || | ||||| ||||||||||||||||||||||| | ||||||||||||| |
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| T |
10507385 |
tgtaatacataaaacaagcacaatcaaagtcacaagtgggatgtgcctagagagctcaatttttgccatgaatttcatgaagcaataaaggaacctatgg |
10507286 |
T |
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| Q |
107 |
acttatatgatatgat |
122 |
Q |
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| T |
10507285 |
acttatattatatgat |
10507270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 10506700 - 10506648
Alignment:
| Q |
345 |
tttttggacacatgttatggccatgacgtgtttggctagagcatgacatcctt |
397 |
Q |
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| T |
10506700 |
tttttggactcatgttgtggctatgacgtgtttggctagagcatgacatcctt |
10506648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 10496487 - 10496416
Alignment:
| Q |
8 |
tgtagtacataaaataaccacaatcaaagatacaagtgacatgtgcttaagaaactcaaattttgccatgaa |
79 |
Q |
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| T |
10496487 |
tgtagaacataaaataagcacaatcaatgacacaagtgacatgtgcctaagaaactctatttgtgccatgaa |
10496416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 10483540 - 10483501
Alignment:
| Q |
10 |
tagtacataaaataaccacaatcaaagatacaagtgacat |
49 |
Q |
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| T |
10483540 |
tagtacataaaataagcacaatcaaagacacaagtgacat |
10483501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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