View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507-Insertion-2 (Length: 1035)
Name: NF1507-Insertion-2
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 456 - 980
Target Start/End: Original strand, 3855695 - 3856216
Alignment:
| Q |
456 |
ttgttcataatttatttatacataaaaatgtttatttcccttttatttattttnnnnnnnggaaatagcaaagaatacttgataaaattatttattttgg |
555 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
3855695 |
ttgttcataatttatttatacataaaaatgtttatttcccctttattt----taaaaaaaggaaatagcaaagaatacttgataaaattatttattttgg |
3855790 |
T |
|
| Q |
556 |
tgtttgacaagcgtgatcatctgcttctacatcattctttgtgcgatggggtaatgatgaaagactacacaattccaatttagaatttgttgataggtgt |
655 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3855791 |
tgtttgacaagcgtgatcatctgcttctacatcattctttgtgcgatggggtaatgttgaaagactacacaattccaatttagaatttgttgataggtgt |
3855890 |
T |
|
| Q |
656 |
atttaaattatttctcttaacatgatagtaaacattgtaaaattattttctatttgtttataaatagtatttttattcctaaagtagatatttgtacttc |
755 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3855891 |
atttaaattatttctcctaacatgatagtaaacattgtaaaattattttctatttgtttataaatagttgttttattcctaaagtagatatttgtacttc |
3855990 |
T |
|
| Q |
756 |
cttatagttggaccagtactaggagagacttgttcaacaaaataagaaaccacggc-nnnnnnnnnngttacaaacaagaaaacaggaaaaagaagaaac |
854 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
3855991 |
cttatagttggaccagtactaggagagacttgttcaacaaaataagaaaccacagctttttttttttgttacaaacaagaaaacaggaaaaagaagaaac |
3856090 |
T |
|
| Q |
855 |
ataaagctattctctcataaagaaagttccagccgcatcactttggaggggaagaagaagatccgctggtagagagtcatgacgaaacaacagtttaaaa |
954 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3856091 |
ataaagctattctctcagaaagaaagttccagccgcatcactttggaggggaagaagaagatccgctggaggagagtcatgacgaaacaacagtttaaaa |
3856190 |
T |
|
| Q |
955 |
caataatcttcattcatcacgcaaca |
980 |
Q |
| |
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||||||||||||||| |||||||||| |
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| T |
3856191 |
caataatcttcattcttcacgcaaca |
3856216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 426
Target Start/End: Original strand, 3855284 - 3855702
Alignment:
| Q |
8 |
attttttatgagtaaatcctcgagaagtggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttttg |
107 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3855284 |
attttttatgagtaaatcctcgagaaatggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagtttttta |
3855383 |
T |
|
| Q |
108 |
agttcgggcaaatgagtaaaacgtttatgaacatggtgtatagttaagaccccattcccattcaagttcaaaacaacaagaggtgaatgagttagaatgc |
207 |
Q |
| |
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|||| |||||||||||||| | ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3855384 |
agtttgggcaaatgagtaagatatttatcaacatggtatatcattaagaccccattcccattcaagttcaaaacaacaagaggtgaataagttagaatgg |
3855483 |
T |
|
| Q |
208 |
catgtggcaagcaaatgggggtagtggaagagtgctgcaaaaaagtgagatcgacatgatcaacaaacccattgactacagggtgaagccaacgaagcaa |
307 |
Q |
| |
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| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3855484 |
gacctgggaagcaaatgggggtagtggaagagtgctgcaaaaaagtgagatcgacatgatcaacaaacccattgactacagggtgaagccaacgaagcaa |
3855583 |
T |
|
| Q |
308 |
cgaggcagagttgcaaaagcaagacgcagacaaaagagttaacgttttgataggaggctgtctgtcaaagataaaggacttcgccattgatatataaaga |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3855584 |
cgaggcagagttgcaaaagcaagacgcagacaaaagagttaatgttttgataggaggctgtctgtcaaagataaaggacttcgccattgatatataaaga |
3855683 |
T |
|
| Q |
408 |
ttataggcgtcttggtcat |
426 |
Q |
| |
|
|||||||||||||| |||| |
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|
| T |
3855684 |
ttataggcgtcttgttcat |
3855702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 8e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 8 - 374
Target Start/End: Complemental strand, 4141339 - 4140973
Alignment:
| Q |
8 |
attttttatgagtaaatcctcgagaagtggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttttg |
107 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| | |
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| T |
4141339 |
attttttatgagcaaatcctcaagaagtggacatacagagagaatctgaataagatatttaagctttagaaaatgaacctttgtcatgtggagtttttcg |
4141240 |
T |
|
| Q |
108 |
agttcgggcaaatgagtaaaacgtttatgaacatggtgtatagttaagaccccattcccattcaagttcaaaacaacaagaggtgaatgagttagaatgc |
207 |
Q |
| |
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|| | ||||| || |||| || || || |||| || ||| ||||| |||||||||||||||||||||||||||||||||| |||| | |||||| |
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| T |
4141239 |
aggttgggcagattagtataagattcataaacacagtctattgttaacaccccattcccattcaagttcaaaacaacaagagttgaacaa---agaatgt |
4141143 |
T |
|
| Q |
208 |
catgtggcaagcaaatgggggtagtggaagag---tgctgcaaaaaagtgagatcgacatgatcaacaaacccattgactacagggtgaagccaacgaag |
304 |
Q |
| |
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|| ||||||| |||| ||||||| ||||||| |||||||||||||||| ||| ||||| ||| | || || || | || || ||||||| || |
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| T |
4141142 |
tatttggcaagtaaatcggggtagcggaagagtgctgctgcaaaaaagtgaaatcaacatgttcagctttccaatagattgcatagtaaagccaatgaca |
4141043 |
T |
|
| Q |
305 |
caacgaggcagagttgcaaaagcaagacgcagacaaaagagttaacgttttgataggaggctgtctgtca |
374 |
Q |
| |
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||||||||||||||||| |||| |||||| |||||||||||||| ||||||||||| ||||||||||| |
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| T |
4141042 |
taacgaggcagagttgcagaagcgagacgcggacaaaagagttaatgttttgataggtagctgtctgtca |
4140973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 3e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 1882093 - 1881932
Alignment:
| Q |
8 |
attttttatgagtaaatcctcgagaagtggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttttg |
107 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||||||| ||||| ||||| |||| | ||||||||||||| |
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| T |
1882093 |
atttttgatgagtaaatcctcaagaagcggacatacagagagaatcttaataagaaattgaagctttagaaaatgaacccttgtgaagtggagttttttg |
1881994 |
T |
|
| Q |
108 |
agttcgggcaaatgagtaaaacgtttatgaacatggtgtatagttaagaccccattcccatt |
169 |
Q |
| |
|
|| | |||||||| ||||| | |||||||||| || ||||||||||||||||||||||| |
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|
| T |
1881993 |
aggttgggcaaattagtaagagagttatgaacattgtcaatagttaagaccccattcccatt |
1881932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 1881567 - 1881510
Alignment:
| Q |
214 |
gcaagcaaatgggggtagtggaagagtgctgcaaaaaagtgagatcgacatgatcaac |
271 |
Q |
| |
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||||| ||||||||||||||| ||| |||| || ||||||||||| |||||| ||||| |
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|
| T |
1881567 |
gcaagtaaatgggggtagtgggagaatgctacagaaaagtgagattgacatgttcaac |
1881510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 41541887 - 41541770
Alignment:
| Q |
8 |
attttttatgagtaaatcctcgagaagtggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttttg |
107 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||||||| |||||||||||||||||| ||| ||||||| ||||| ||||| |||| | ||||||||||||| |
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|
| T |
41541887 |
atttttgatgagtaaatcctcaagaagcggacatacggagagaatcttaataagaaattgaagctttggaaaatgaacccttgtgaagtggagttttttg |
41541788 |
T |
|
| Q |
108 |
agttcgggcaaatgagta |
125 |
Q |
| |
|
|| | |||||||| |||| |
|
|
| T |
41541787 |
aggttgggcaaattagta |
41541770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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