View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1507-Insertion-20 (Length: 457)

Name: NF1507-Insertion-20
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1507-Insertion-20
NF1507-Insertion-20
[»] chr2 (2 HSPs)
chr2 (8-439)||(15171984-15172415)
chr2 (195-278)||(5127639-5127722)
[»] chr1 (3 HSPs)
chr1 (196-420)||(30258190-30258414)
chr1 (229-365)||(44376702-44376838)
chr1 (17-115)||(30258495-30258593)
[»] chr4 (2 HSPs)
chr4 (195-404)||(54382866-54383075)
chr4 (199-284)||(29917930-29918015)
[»] chr8 (3 HSPs)
chr8 (196-415)||(13825299-13825518)
chr8 (243-362)||(38720023-38720142)
chr8 (195-278)||(35925838-35925921)
[»] chr7 (2 HSPs)
chr7 (192-415)||(43435327-43435550)
chr7 (199-284)||(47919215-47919300)
[»] chr3 (3 HSPs)
chr3 (192-415)||(9479183-9479406)
chr3 (198-281)||(49591049-49591132)
chr3 (301-415)||(1176187-1176301)


Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 439
Target Start/End: Complemental strand, 15172415 - 15171984
Alignment:
Q  8 ctcggaaactggtggatcatatccatacaatgcttgtctgttgaacacagttccggtactgacatacactggaccttgaataccatcaagccctttcata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15172415 ctcggaaactggtggatcatatccatacaatgcttgtctgttgaacacagttccggtaccgacatacactggaccttgaataccatcaagccctttcata 15172316  T
Q  108 ttgatctatgataaaaacaaagtttaagggtcatttttctaagtgaaatttgcataaatttgttgatttgaagttaaggagaatgatacttacatcaaag 207  Q
    |||||||||||||||| |||  ||| |||||||||||| ||| || ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||    
T  15172315 ttgatctatgataaaagcaacatttcagggtcatttttttaactgcaatttgcatcaatttgttgagttgcagttaaggagaatgatacttacatcaaag 15172216  T
Q  208 aagacagtgttgcgattagcatatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacatagcagagtttcttccctagtcgaggatcca 307  Q
    || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15172215 aaaacagtgttgcgattagcatatctatcgtgacgatcaataccatcaaatctttgaggaaattggacatagcagagtttcttccctagttgaggatcca 15172116  T
Q  308 ttaggaagcacatggcttctctaagagccttgctattgttgatgtagtgatcacaatcgagattcaacatgaatggtgcatttgtaagcacagcagaaac 407  Q
    | |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15172115 taaggaagcacatggcctctcttagagccttgctattgttgatgtaatgatcacaatcgagattcaacatgaatggtgcatttgtaagcacagcagaaac 15172016  T
Q  408 tcgaaccttttgaagacagacaaaaacaacaa 439  Q
    ||||||||||||| || |||||| || |||||    
T  15172015 tcgaaccttttgaggatagacaacaaaaacaa 15171984  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 5127639 - 5127722
Alignment:
Q  195 acttacatcaaagaagacagtgttgcgattagcatatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacata 278  Q
    ||||||||| ||||| || ||||||||||| |||||||||||   |||||||||||||||||||||||| || ||||| |||||    
T  5127639 acttacatcgaagaaaactgtgttgcgattggcatatcgatcactacgatcaataccatcaaatctttgggggaattgcacata 5127722  T

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Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 196 - 420
Target Start/End: Complemental strand, 30258414 - 30258190
Alignment:
Q  196 cttacatcaaagaagacagtgttgcgattagcatatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacatagcagagtttcttcccta 295  Q
    |||||||||||||| ||||||||| | || ||||||| ||| | |   ||||| |||||||| ||| | ||||||||||||||   |   ||||| || |    
T  30258414 cttacatcaaagaatacagtgttgtggttggcatatctatcattatcgtcaatgccatcaaaccttcgtggaaattggacataagcggtcttctttccaa 30258315  T
Q  296 gtcgaggatccattaggaagcacatggcttctctaagagccttgctattgttgatgtagtgatcacaatcgagattcaacatgaatggtgcatttgtaag 395  Q
    || |||| ||||||||||||||||| |  || ||||||||||||||||| |||||||| ||||||||||| ||||||||||  || ||||||||  ||||    
T  30258314 gtagagggtccattaggaagcacatagactccctaagagccttgctattattgatgtattgatcacaatccagattcaacacaaaaggtgcattgctaag 30258215  T
Q  396 cacagcagaaactcgaaccttttga 420  Q
    ||| ||||||||||||| |||||||    
T  30258214 caccgcagaaactcgaagcttttga 30258190  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 229 - 365
Target Start/End: Original strand, 44376702 - 44376838
Alignment:
Q  229 tatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacatagcagagtttcttccctagtcgaggatccattaggaagcacatggcttctc 328  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||| |||||||| | ||| ||||||  |  ||||||||| | ||| ||||||||||| |    
T  44376702 tatctatcatgacgatcaattccatcaaatctttgaggaaattgcacatagcatatttttttccctgatgtaggatccatcatgaaacacatggcttcac 44376801  T
Q  329 taagagccttgctattgttgatgtagtgatcacaatc 365  Q
     ||| ||||| || ||||| |||||||| ||||||||    
T  44376802 gaagggccttactgttgtttatgtagtggtcacaatc 44376838  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 30258593 - 30258495
Alignment:
Q  17 tggtggatcatatccatacaatgcttgtctgttgaacacagttccggtactgacatacactggaccttgaataccatcaagccctttcatattgatcta 115  Q
    |||||| | ||| ||||| ||||| || ||||||||||||  ||| ||||  |||||||||||||||||||| |||||||| | |||||| ||||||||    
T  30258593 tggtggcttatagccatataatgcctgcctgttgaacacacatccagtaccaacatacactggaccttgaattccatcaaggcatttcatgttgatcta 30258495  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 195 - 404
Target Start/End: Original strand, 54382866 - 54383075
Alignment:
Q  195 acttacatcaaagaagacagtgttgcgattagcatatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacatagcagagtttcttccct 294  Q
    ||||||||||||||| || ||||| | ||||||||||||||| ||   |||||| ||||| |||||||||||||| ||||||||||||| ||||||||||    
T  54382866 acttacatcaaagaaaactgtgttcctattagcatatcgatcatgcgcatcaatgccatcgaatctttgaggaaactggacatagcagactttcttccct 54382965  T
Q  295 agtcgaggatccattaggaagcacatggcttctctaagagccttgctattgttgatgtagtgatcacaatcgagattcaacatgaatggtgcatttgtaa 394  Q
      | | || ||||| | |||||||||||| ||||  | ||||||||| || ||||| || ||||||||||| |  |||| ||| || || ||||||||||    
T  54382966 gtttgggggtccatcaagaagcacatggcctctcggacagccttgctgttattgatataatgatcacaatccaagttcagcataaaaggagcatttgtaa 54383065  T
Q  395 gcacagcaga 404  Q
    |||| |||||    
T  54383066 gcactgcaga 54383075  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 284
Target Start/End: Original strand, 29917930 - 29918015
Alignment:
Q  199 acatcaaagaagacagtgttgcgattagcatatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacatagcagag 284  Q
    |||||||||||||| |||||| |||||||||||| |||     |||||||||| ||||| |||||||| |||||||||||||||||    
T  29917930 acatcaaagaagacggtgttgtgattagcatatctatcagagggatcaataccctcaaacctttgagggaattggacatagcagag 29918015  T

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Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 196 - 415
Target Start/End: Original strand, 13825299 - 13825518
Alignment:
Q  196 cttacatcaaagaagacagtgttgcgattagcatatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacatagcagagtttcttcccta 295  Q
    ||||| |||||||| ||||| || ||||| |||||||||||||  | ||||||||||||||| || || ||||| ||||||||||| |  |  || || |    
T  13825299 cttacgtcaaagaaaacagtattacgattggcatatcgatcgttcctatcaataccatcaaacctctgtggaaactggacatagcaaacatgtttaccga 13825398  T
Q  296 gtcgaggatccattaggaagcacatggcttctctaagagccttgctattgttgatgtagtgatcacaatcgagattcaacatgaatggtgcatttgtaag 395  Q
    |   ||||||||| |  |||||||| || || || |  |||||||| ||||| ||||||||||||||||| |||||||| | ||| ||| |||| |||||    
T  13825399 ggttaggatccatcataaagcacatagcctccctcaaggccttgctgttgtttatgtagtgatcacaatcaagattcaataagaaaggtccattagtaag 13825498  T
Q  396 cacagcagaaactcgaacct 415  Q
     |||||||| ||||||||||    
T  13825499 gacagcagatactcgaacct 13825518  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 243 - 362
Target Start/End: Original strand, 38720023 - 38720142
Alignment:
Q  243 atcaataccatcaaatctttgaggaaattggacatagcagagtttcttccctagtcgaggatccattaggaagcacatggcttctctaagagccttgcta 342  Q
    |||||| |||||||||||||| |||||||| ||||||||||  ||||| || ||| |||| ||||| |  || |||||||| ||||||||||||||||||    
T  38720023 atcaattccatcaaatctttgtggaaattgtacatagcagatcttcttgccaagttgagggtccatcataaaacacatggcctctctaagagccttgcta 38720122  T
Q  343 ttgttgatgtagtgatcaca 362  Q
    || |||||||| ||||||||    
T  38720123 ttattgatgtaatgatcaca 38720142  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 35925838 - 35925921
Alignment:
Q  195 acttacatcaaagaagacagtgttgcgattagcatatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacata 278  Q
    ||||||||||||||| || || ||||| || |||||||||||    ||||||||||||||||||||||| || ||||| |||||    
T  35925838 acttacatcaaagaaaactgtattgcggttggcatatcgatcactgcgatcaataccatcaaatctttgggggaattgtacata 35925921  T

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Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 192 - 415
Target Start/End: Original strand, 43435327 - 43435550
Alignment:
Q  192 gatacttacatcaaagaagacagtgttgcgattagcatatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacatagcagagtttcttc 291  Q
    ||||||||| |||||||| ||||| || ||||| |||||||| ||||  | ||||||||||||||| || || ||||| ||||||||||| |  |  ||     
T  43435327 gatacttacctcaaagaaaacagtattacgattggcatatcggtcgttcctatcaataccatcaaacctctgtggaaactggacatagcaaacatattta 43435426  T
Q  292 cctagtcgaggatccattaggaagcacatggcttctctaagagccttgctattgttgatgtagtgatcacaatcgagattcaacatgaatggtgcatttg 391  Q
    || ||   ||||||||| |  |||||||| ||||| || |  |||||||| ||||| ||||||||||||||||| |||||||| | ||| ||| |||| |    
T  43435427 ccgaggttaggatccatcataaagcacatagcttccctcaaggccttgctgttgtttatgtagtgatcacaatcaagattcaataagaaaggtccattag 43435526  T
Q  392 taagcacagcagaaactcgaacct 415  Q
    |||| ||| |||| ||||||||||    
T  43435527 taagaacaccagatactcgaacct 43435550  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 284
Target Start/End: Complemental strand, 47919300 - 47919215
Alignment:
Q  199 acatcaaagaagacagtgttgcgattagcatatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacatagcagag 284  Q
    ||||||||||||||||||||| |||||||||||| |||     |||||||||| ||||| || || || |||||||||||||||||    
T  47919300 acatcaaagaagacagtgttgtgattagcatatctatcagagggatcaataccctcaaacctctgggggaattggacatagcagag 47919215  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 192 - 415
Target Start/End: Complemental strand, 9479406 - 9479183
Alignment:
Q  192 gatacttacatcaaagaagacagtgttgcgattagcatatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacatagcagagtttcttc 291  Q
    |||||||||||||||||| ||||| || || || |||||||||||||  | ||||||||||||||| || || |||||||| |||||||| |  || ||     
T  9479406 gatacttacatcaaagaaaacagtattacggttggcatatcgatcgttcctatcaataccatcaaacctctgtggaaattgaacatagcaaacatttttt 9479307  T
Q  292 cctagtcgaggatccattaggaagcacatggcttctctaagagccttgctattgttgatgtagtgatcacaatcgagattcaacatgaatggtgcatttg 391  Q
    || ||    |||||||| |  || ||||| ||||| || |  || ||||| ||||| ||||| ||||||||||| |||||||| | ||| ||| |||| |    
T  9479306 ccaaggttgggatccatcataaaacacatagcttccctcaaggctttgctgttgtttatgtaatgatcacaatcaagattcaataagaaaggtccattag 9479207  T
Q  392 taagcacagcagaaactcgaacct 415  Q
    |||||||||| || || |||||||    
T  9479206 taagcacagctgatacacgaacct 9479183  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 281
Target Start/End: Original strand, 49591049 - 49591132
Alignment:
Q  198 tacatcaaagaagacagtgttgcgattagcatatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacatagca 281  Q
    |||||| ||||||||| | |||||||| ||||||||||||||   |||||| ||||||||||| || |||||||| ||||||||    
T  49591049 tacatcgaagaagacaatattgcgattggcatatcgatcgtgcaaatcaatgccatcaaatctctgcggaaattgaacatagca 49591132  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 1176187 - 1176301
Alignment:
Q  301 ggatccattaggaagcacatggcttctctaagagccttgctattgttgatgtagtgatcacaatcgagattcaacatgaatggtgcatttgtaagcacag 400  Q
    |||||||| | ||| ||||| |||||||||| ||||||||||||||||||||| |||| | | ||||  |||||||  || |||||||| | ||||||||    
T  1176187 ggatccatcatgaaacacattgcttctctaatagccttgctattgttgatgtaatgattatagtcgaagttcaacacaaaaggtgcattggaaagcacag 1176286  T
Q  401 cagaaactcgaacct 415  Q
     ||| |||| |||||    
T  1176287 aagacactctaacct 1176301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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