View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1507-Insertion-26 (Length: 439)

Name: NF1507-Insertion-26
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1507-Insertion-26
NF1507-Insertion-26
[»] chr6 (4 HSPs)
chr6 (193-428)||(35091745-35091980)
chr6 (7-105)||(35092942-35093042)
chr6 (148-195)||(35092889-35092936)
chr6 (321-428)||(19228492-19228599)
[»] chr2 (4 HSPs)
chr2 (192-303)||(9259579-9259689)
chr2 (195-301)||(17139937-17140043)
chr2 (213-295)||(31392295-31392377)
chr2 (321-420)||(39809469-39809568)
[»] chr3 (4 HSPs)
chr3 (195-303)||(1580996-1581105)
chr3 (195-303)||(41404207-41404316)
chr3 (258-303)||(3663805-3663850)
chr3 (321-425)||(41403985-41404089)
[»] chr1 (3 HSPs)
chr1 (213-303)||(3290493-3290583)
chr1 (195-295)||(32984385-32984486)
chr1 (321-425)||(32984613-32984717)
[»] chr7 (6 HSPs)
chr7 (195-303)||(30464521-30464630)
chr7 (195-289)||(8160939-8161032)
chr7 (195-303)||(39827621-39827730)
chr7 (321-428)||(30464295-30464402)
chr7 (323-437)||(8160696-8160810)
chr7 (321-427)||(39827396-39827502)
[»] chr8 (1 HSPs)
chr8 (257-303)||(12735469-12735515)


Alignment Details
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 193 - 428
Target Start/End: Complemental strand, 35091980 - 35091745
Alignment:
Q  193 cgaattgctagagagaggggtttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttgg 292  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35091980 cgaattgctagagagaggggtttgcgaaggttgagttgcacgtcgattcgagtgtggtggtgtgtaccctgcacacaactaaggatggaagtgttgttgg 35091881  T
Q  293 ttgacgtctcaatcnnnnnnntcattgagttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaac 392  Q
    ||||||||||||||       ||| |||||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||||    
T  35091880 ttgacgtctcaatcaaaaaaatcactgagttgcgtgtgtatgagtagtgtccaattaggcttaattctttggtgttagctgatgttatcgagataacaac 35091781  T
Q  393 ccctaaaatcatctatgtttagttttctcttttctc 428  Q
     |||||||||||||||||||||||||||||||||||    
T  35091780 tcctaaaatcatctatgtttagttttctcttttctc 35091745  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 35093042 - 35092942
Alignment:
Q  7 atttgagatattgaagtgcacttgattgaggttgaatcgatacc--nnnnnnnnngtttaagaacatcgccaactaatggtgctcttattaacgtatata 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| ||||||||||||||||||||||||||    
T  35093042 atttgagatattgaagtgcacttgattgaggttgaatcgataccttttttttttgttttaagaacatcgccaattaatggtgctcttattaacgtatata 35092943  T
Q  105 t 105  Q
    |    
T  35092942 t 35092942  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 35092936 - 35092889
Alignment:
Q  148 gcgttctcaatggtttttcgctacccaataatatcataaagtgaccga 195  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35092936 gcgttttcaatggtttttcgctacccaataatatcataaagtgaccga 35092889  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 428
Target Start/End: Original strand, 19228492 - 19228599
Alignment:
Q  321 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 420  Q
    ||||| |||||||||| | ||||||| ||| ||||  ||| |||||||| |||||||||| |  ||||  ||||||| | |||||| |||||| ||||||    
T  19228492 gttgcgtgtgtatgagcaatgtccaactaggcttagttctctggtgttagctgatgttatgggaataatgacccctagattcatctctgtttaattttct 19228591  T
Q  421 cttttctc 428  Q
    ||||||||    
T  19228592 cttttctc 19228599  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 192 - 303
Target Start/End: Complemental strand, 9259689 - 9259579
Alignment:
Q  192 ccgaattgctagagagaggggtttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttg 291  Q
    |||||||||||||||||||  ||||||||||||||||| || || |||||||||||||||||| | || ||| |||||||||||||||||||||||||||    
T  9259689 ccgaattgctagagagaggt-tttgcgaaggttgagttacacgttgattcgagtgtggtggtgaggactctgtagacaactaaggatggaagtgttgttg 9259591  T
Q  292 gttgacgtctca 303  Q
    |||| |||||||    
T  9259590 gttggcgtctca 9259579  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 195 - 301
Target Start/End: Complemental strand, 17140043 - 17139937
Alignment:
Q  195 aattgctagagagaggggtttg-cgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 293  Q
    ||||||||||||||| |||||  ||||||||||||| || || |||||||||||||||||||| || ||||||||||||||||||||||||||| |||||    
T  17140043 aattgctagagagagaggtttttcgaaggttgagttacatgttgattcgagtgtggtggtgtggactctgcagacaactaaggatggaagtgtt-ttggt 17139945  T
Q  294 tgacgtct 301  Q
    || |||||    
T  17139944 tggcgtct 17139937  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 31392295 - 31392377
Alignment:
Q  213 tttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggttg 295  Q
    ||||| |||||||||||||| |  ||||| ||||| |||||| | |||||||||| |||||||||||||||| ||||||||||    
T  31392295 tttgcaaaggttgagttgcacgctgattcaagtgtagtggtgcggaccctgcagataactaaggatggaagtattgttggttg 31392377  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 420
Target Start/End: Original strand, 39809469 - 39809568
Alignment:
Q  321 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 420  Q
    ||||| ||||||||||||||||| | |||| ||||  | |  |||||||||| ||||||| | |||| | ||||||| | |||||| |||||||||||||    
T  39809469 gttgcgtgtgtatgagtagtgtctagttaggcttagttatccggtgttaactaatgttatggggatagcgacccctagagtcatctctgtttagttttct 39809568  T

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Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 195 - 303
Target Start/End: Original strand, 1580996 - 1581105
Alignment:
Q  195 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 293  Q
    ||||||||||||||| ||||| || |||||||||||||| || ||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  1580996 aattgctagagagagaggttttgcaaaggttgagttgcacgttgattcaagtgtggtggtgcataccctacagacaactaaggatggaagtgttgttggt 1581095  T
Q  294 tgacgtctca 303  Q
    || |||||||    
T  1581096 tggcgtctca 1581105  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 195 - 303
Target Start/End: Complemental strand, 41404316 - 41404207
Alignment:
Q  195 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 293  Q
    ||||| ||||||||| ||||| ||||||||||||||||| || |||| |||||||||||||  ||||||||| |||||| ||||||||||||||||||||    
T  41404316 aattgttagagagagaggttttgcgaaggttgagttgcatgttgatttgagtgtggtggtgcataccctgcaaacaacttaggatggaagtgttgttggt 41404217  T
Q  294 tgacgtctca 303  Q
    || |||||||    
T  41404216 tggcgtctca 41404207  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 303
Target Start/End: Complemental strand, 3663850 - 3663805
Alignment:
Q  258 accctgcagacaactaaggatggaagtgttgttggttgacgtctca 303  Q
    |||||||| |||||||| |||||||||||||||||||| |||||||    
T  3663850 accctgcaaacaactaaagatggaagtgttgttggttggcgtctca 3663805  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 425
Target Start/End: Complemental strand, 41404089 - 41403985
Alignment:
Q  321 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 420  Q
    ||||||||||||||| |||||||||  ||||||||  ||| |||||||| || |||||||   |||| | || |||| | || ||| ||| |||||||||    
T  41404089 gttgcatgtgtatgactagtgtccagctagacttagttctctggtgttagcttatgttatgtggatagcgactcctagagtcgtctctgtctagttttct 41403990  T
Q  421 ctttt 425  Q
    |||||    
T  41403989 ctttt 41403985  T

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Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 213 - 303
Target Start/End: Original strand, 3290493 - 3290583
Alignment:
Q  213 tttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggttgacgtctca 303  Q
    |||||||||||||||||||| || |||||||||||||| ||| |||||||||||||||  ||||||||||||||||||||||| |||||||    
T  3290493 tttgcgaaggttgagttgcacgttgattcgagtgtggttgtgcgtaccctgcagacaatcaaggatggaagtgttgttggttggcgtctca 3290583  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 195 - 295
Target Start/End: Original strand, 32984385 - 32984486
Alignment:
Q  195 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 293  Q
    |||||||||| |||| ||||| || |||||||||||||| || ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  32984385 aattgctagacagagaggttttgcaaaggttgagttgcacgttgattcaagtgtggtggtgcataccctgcagacaactaaggatggaagtgttgttggt 32984484  T
Q  294 tg 295  Q
    ||    
T  32984485 tg 32984486  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 425
Target Start/End: Original strand, 32984613 - 32984717
Alignment:
Q  321 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 420  Q
    ||||| |||||||||| | ||||||  ||| ||||  ||| ||||||||  ||||||||| | |||| ||||||||| | |||||| |||||| ||||||    
T  32984613 gttgcgtgtgtatgagcaatgtccagctaggcttagttctctggtgttagttgatgttatggggatagcaacccctagagtcatctctgtttaattttct 32984712  T
Q  421 ctttt 425  Q
    |||||    
T  32984713 ctttt 32984717  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 195 - 303
Target Start/End: Complemental strand, 30464630 - 30464521
Alignment:
Q  195 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 293  Q
    ||||||||||||||| ||||| || || ||||||||||| ||  |||| ||||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  30464630 aattgctagagagagaggttttgcaaaagttgagttgcacgttaattcaagtgtggtggtgcataccctgcagacaactaagaatggaagtgttgttggt 30464531  T
Q  294 tgacgtctca 303  Q
    || |||||||    
T  30464530 tggcgtctca 30464521  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 195 - 289
Target Start/End: Complemental strand, 8161032 - 8160939
Alignment:
Q  195 aattgctagagagaggggtttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgt 289  Q
    |||| |||||||||||  ||||| || |||||||||||||| ||||| ||||||||||||  |||||||||||||||||||||| ||||||||||    
T  8161032 aatttctagagagaggt-tttgcaaaagttgagttgcaagttgattcaagtgtggtggtgcataccctgcagacaactaaggatagaagtgttgt 8160939  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 195 - 303
Target Start/End: Complemental strand, 39827730 - 39827621
Alignment:
Q  195 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 293  Q
    ||||||||||||||| ||||| || || |||||||| || || ||||||||||||||||||  || | |||| ||||||||||||||| |||||| ||||    
T  39827730 aattgctagagagagaggtttagcaaaagttgagtttcacgttgattcgagtgtggtggtgcatagcttgcaaacaactaaggatggaggtgttgctggt 39827631  T
Q  294 tgacgtctca 303  Q
    || |||||||    
T  39827630 tggcgtctca 39827621  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 321 - 428
Target Start/End: Complemental strand, 30464402 - 30464295
Alignment:
Q  321 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 420  Q
    ||||| |||||||||||||||||||  ||| ||||  ||| |||||||| |||||||||| | |||| | ||||||||| |||||| |||||  ||||||    
T  30464402 gttgcgtgtgtatgagtagtgtccagctaggcttatttctctggtgttagctgatgttatggggatagcgacccctaaagtcatctttgtttgattttct 30464303  T
Q  421 cttttctc 428  Q
    ||||||||    
T  30464302 cttttctc 30464295  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 437
Target Start/End: Complemental strand, 8160810 - 8160696
Alignment:
Q  323 tgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttctct 422  Q
    ||||||||| |||| ||||||||  ||  ||||  ||| |||||||| |||||||||| | ||||   ||||||| | |||||| | |||||||||||||    
T  8160810 tgcatgtgtctgagcagtgtccagctaagcttagttctctggtgttagctgatgttatggggatagtgacccctagagtcatctctatttagttttctct 8160711  T
Q  423 tttctcatacttagg 437  Q
    |||||| | ||||||    
T  8160710 tttctcgtgcttagg 8160696  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 427
Target Start/End: Complemental strand, 39827502 - 39827396
Alignment:
Q  321 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 420  Q
    ||||| |||||||||| |||||| || ||||||||  | | || |||||  ||||||||| | |||| | ||||||| | |||||| |||||||||||||    
T  39827502 gttgcgtgtgtatgagcagtgtcaaactagacttagttatctgatgttagttgatgttatagggatagcgacccctagagtcatctctgtttagttttct 39827403  T
Q  421 cttttct 427  Q
     ||||||    
T  39827402 tttttct 39827396  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 12735515 - 12735469
Alignment:
Q  257 taccctgcagacaactaaggatggaagtgttgttggttgacgtctca 303  Q
    |||||| || |||||||| |||| |||||||||||||||||||||||    
T  12735515 taccctacaaacaactaaagatgaaagtgttgttggttgacgtctca 12735469  T

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