View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507-Insertion-27 (Length: 428)
Name: NF1507-Insertion-27
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507-Insertion-27 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 5189954 - 5189704
Alignment:
| Q |
8 |
ttgtggagacttattggtggagcatttatcactgcataatcatttgtttattaggggaacgtccggttgagtaccgcatcttatggaagcttatgactaa |
107 |
Q |
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| T |
5189954 |
ttgtggagacttattggtggagcaattatcactgcataatcatttgtttattaggggaacgtccggttgagtaccgcatcttatggaagcttatgactaa |
5189855 |
T |
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| Q |
108 |
ttatttaatttaaagtacatgtcatttgaaagcaatcttaaggtttaataagtgattagtttatatgaaaatatcagtaaggataaggccacttattaaa |
207 |
Q |
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| T |
5189854 |
ttatttaatttaaagtacatgtcatttgaaagcaaccttaaggtttaataagtgattagtttatatgaaaatatctgtaaggataaggccacttattaaa |
5189755 |
T |
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| Q |
208 |
gtctactctctttttgtcatttcttgggcattcttccaatcaattattagt |
258 |
Q |
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| T |
5189754 |
gtctactctctttttgtcatttcttgggcattcttccaatcaattattagt |
5189704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 320 - 428
Target Start/End: Complemental strand, 5189642 - 5189535
Alignment:
| Q |
320 |
ggtactttataataatcaaacggccatctagaagagtgagtgatacaactatattataaataaacatatcgtgcatcatcatgaagagattctttctttt |
419 |
Q |
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| T |
5189642 |
ggtactttataataatcaaacggccatctagaagagtgagtgatacaactatattataaat-aacatatcgtgcatcatcatgaagagattctttctttt |
5189544 |
T |
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| Q |
420 |
cgtttggag |
428 |
Q |
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| T |
5189543 |
cgtttggag |
5189535 |
T |
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