View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1507-Insertion-33 (Length: 363)
Name: NF1507-Insertion-33
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507-Insertion-33 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 7 - 363
Target Start/End: Original strand, 37553915 - 37554271
Alignment:
| Q |
7 |
acatctaacccactagtacacgtttcagtggagatcgattaaaacttactatgaaattaaggcaaaggatacatgagtgaattttccagatattggttca |
106 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37553915 |
acatctaacccactagtacacgttccagtggagatcgattaaaacttactatgaaattaaggcaaaggatacatgagtgaattttccaaatattggttcc |
37554014 |
T |
|
| Q |
107 |
ttgaatgatggcagagaatcacttcaaggagcggttatgcttaatttcccttaaaaggctagatatattaaaaggtgatgggttttggaagtaatgtaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||| ||||||| |
|
|
| T |
37554015 |
ttgaatgatggcagagaatcacttcaaggaacggttatgcttaatttcccttaaaaggttagatctattaaaaggtgatggattttggaagtcatgtaaa |
37554114 |
T |
|
| Q |
207 |
ggtgtattgatcggacctcccggtacggggaaaatgatgtctgcaaaggcagtttgcaaacgaagatgggacaagcttcatcaatgtatcttcgtccatc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37554115 |
ggtgtattgatcggacctcccggtacggggaaaatgatgtctgcaaaggcagtttgcaaacgaagatgggacaagcttcatcaatgtatcttcgtccatc |
37554214 |
T |
|
| Q |
307 |
attagcggaatgttgttcggacaaagtgaaaagaacgttcgagctctatttttatta |
363 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37554215 |
attagtggaatgttgttcgaacaaagtgaaaagaacgttcgagctctgtttttatta |
37554271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 215
Target Start/End: Original strand, 44934962 - 44935090
Alignment:
| Q |
83 |
gtgaattttccagatattggttcattgaatgatggcagagaatcacttcaaggagcggttatgcttaatttcccttaaaaggctagatatattaaaaggt |
182 |
Q |
| |
|
|||| |||| ||||||||||| | ||| |||||| | |||||||||||||| ||||||||||||| |||||| ||| | |||| |||| |||||| |
|
|
| T |
44934962 |
gtgactttttcagatattggtgctttggatgatgttaaagaatcacttcaagaagcggttatgcttc----cccttagaagaccagatctattcaaaggt |
44935057 |
T |
|
| Q |
183 |
gatgggttttggaagtaatgtaaaggtgtattg |
215 |
Q |
| |
|
|||||| || |||| |||||||||||||||| |
|
|
| T |
44935058 |
gatggggttctgaagccatgtaaaggtgtattg |
44935090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 44926522 - 44926649
Alignment:
| Q |
83 |
gtgaattttccagatattggttcattgaatgatggcagagaatcacttcaaggagcggttatgcttaatttcccttaaaaggctagatatattaaaaggt |
182 |
Q |
| |
|
|||| |||| ||||||||||| ||||| |||| | | |||||||||||||| ||| ||||||||| |||||| ||| | ||||||||| ||||| |
|
|
| T |
44926522 |
gtgactttttcagatattggtgcattggatgacgttaaagaatcacttcaagaagcagttatgcttc----cccttagaagaccagatatattcaaaggg |
44926617 |
T |
|
| Q |
183 |
gatgggttttggaagtaatgtaaaggtgtatt |
214 |
Q |
| |
|
|||||| || |||| ||||||||||||||| |
|
|
| T |
44926618 |
gatggggttctgaagccatgtaaaggtgtatt |
44926649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University