View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507-Insertion-37 (Length: 324)
Name: NF1507-Insertion-37
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507-Insertion-37 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 324
Target Start/End: Complemental strand, 1249162 - 1248846
Alignment:
| Q |
8 |
cttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcgggg |
107 |
Q |
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| T |
1249162 |
cttaggaaggcggccgaggtaagccggaacccgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcaggg |
1249063 |
T |
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| Q |
108 |
ataggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgc |
207 |
Q |
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| T |
1249062 |
ataggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgc |
1248963 |
T |
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| Q |
208 |
ggaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccgacgaggtcatcagcaccgtcgatctcgaggaagttgacacggta |
307 |
Q |
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| T |
1248962 |
ggaatatgagggtctccaggtatggtaggtcagcaatgagtggggggatcgtaccgacgaggtcatcagcaccgtcgatctcgaggaagttgacacggta |
1248863 |
T |
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| Q |
308 |
gattgtggtttttggga |
324 |
Q |
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| T |
1248862 |
gattgttgtttttggga |
1248846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 12079465 - 12079780
Alignment:
| Q |
9 |
ttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcgggga |
108 |
Q |
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| T |
12079465 |
ttaggaaggcggccgaggtaagctggaattggaccggttaattggttgttattaagccctaaggtggctaaattggttagtttgctaaagtaatcaggga |
12079564 |
T |
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| Q |
109 |
taggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcg |
208 |
Q |
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| T |
12079565 |
taggaccagttaggttgttccaattaaggaggacaaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgttaggttaggtaggaggcg |
12079664 |
T |
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| Q |
209 |
gaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccgacgaggtcatcagcaccgtcgatctcgaggaagttgacacggtag |
308 |
Q |
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| T |
12079665 |
taaaatgagggtctcgaggtaaggtagatcggcgatgagtggcggtattgtaccgacaagatcatcagcaccatctatctcaaggaagttgacacgatgg |
12079764 |
T |
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| Q |
309 |
attgtggtttttggga |
324 |
Q |
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| T |
12079765 |
atggttgtttttggga |
12079780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 12096105 - 12096420
Alignment:
| Q |
9 |
ttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcgggga |
108 |
Q |
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||||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||| |||| |
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| T |
12096105 |
ttaggaaggcggccgaggtaagcaggaattggaccggttaattggttgttattaagccctaaggtggctaaattggtaagtttgctaaagtaatcaggga |
12096204 |
T |
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| Q |
109 |
taggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcg |
208 |
Q |
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| T |
12096205 |
taggaccagttaggttgttccaattaaggaggacaaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgttaggttagggaggaggcg |
12096304 |
T |
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| Q |
209 |
gaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccgacgaggtcatcagcaccgtcgatctcgaggaagttgacacggtag |
308 |
Q |
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| T |
12096305 |
aaaaatgagggtctcgaggtaaggtagatcggcgatgagtggcgggattgtaccgacaagatcatcagcgccatctatctcaaggaagttgacacgatgg |
12096404 |
T |
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| Q |
309 |
attgtggtttttggga |
324 |
Q |
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|| || |||||||||| |
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| T |
12096405 |
atggttgtttttggga |
12096420 |
T |
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