View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507-Insertion-39 (Length: 319)
Name: NF1507-Insertion-39
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507-Insertion-39 |
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| [»] scaffold0150 (2 HSPs) |
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Alignment Details
Target: scaffold0150 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 18217 - 17909
Alignment:
| Q |
11 |
ggagcagatggatttaagagaatgtccttagtttggtggtcagattgcatgtaattgtggttgaggttttctacactctggtagaggttgcctaagctcc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18217 |
ggagcagatggatttaagagaatgtccttagtttggtggtcagattgcatgtaattgtggttgaggttttctacactctggtagaggttgcctaagctcc |
18118 |
T |
|
| Q |
111 |
caaccatttcgttcttgctgagaagctttactacgttgcctataggcaagcatagcatgttgaaaagaaagtctatgacgggtttagatgcttcagcaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18117 |
caaccatttcgttcttgctgagaagctttactacgttgcctataggcaagcatagcatgttgaaaagaaagtctataacgggtttagatgcttcagcaaa |
18018 |
T |
|
| Q |
211 |
gagaactctttcattctttgtgtcaataagaagtttgagggtcagtttggtggtggaagaagaagacatattgaaatgcacacgtcaaaaatcaatacct |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18017 |
gagaactctttcattctttgtgtcaataagaagtttgagggtcagtttggtggtggaagaagaagacatattgaaatgcacacgttaaaaatcaatacct |
17918 |
T |
|
| Q |
311 |
agagactag |
319 |
Q |
| |
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||||||||| |
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| T |
17917 |
agagactag |
17909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 272
Target Start/End: Original strand, 9060 - 9162
Alignment:
| Q |
170 |
ttgaaaagaaagtctatgacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagtttgagggtcagtttggtggtggaag |
269 |
Q |
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||||||||||| ||||| || | ||| |||||||||||||| |||||| | |||||| | |||||||| |||||||||||||||| |||| ||||||||| |
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| T |
9060 |
ttgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaactttctcattcatggtgtcaatgagaagtttgagggtcactttgttggtggaag |
9159 |
T |
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| Q |
270 |
aag |
272 |
Q |
| |
|
||| |
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|
| T |
9160 |
aag |
9162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 17016856 - 17017155
Alignment:
| Q |
11 |
ggagcagatggatttaagagaatgtccttagtttggtggtcagattgcatgtaattgtggttgaggttttctacactctggtagaggttgcctaagctcc |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17016856 |
ggagcagatggatttaagagaatgtccttagtttggtggtcagattgcatgtaattgtggttgaggttttctacactctggtagaggttgcctaagctcc |
17016955 |
T |
|
| Q |
111 |
caaccatttcgttcttgctgagaagctttactacgttgcctataggcaagcatagcatgttgaaaagaaagtctatgacgggtttagatgcttcagcaaa |
210 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17016956 |
caaccatttcgttcttgttgagaagctttactacgttacctataggcaagcatagcatgttgaaaagaaagtctacgacgggtttagatgcttcagcaaa |
17017055 |
T |
|
| Q |
211 |
gagaactctttcattctttgtgtcaataagaagtttgagggtcagtttggtggtggaagaagaagacatattgaaatgcacacgtcaaaaatcaatacct |
310 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
17017056 |
gagaactctttcaatctttgtgtcaataagaagtttgagggtcagtttggtggtggaagaagaagacatattgaaatacacacgtcaaaaatcgatacct |
17017155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 17547293 - 17547592
Alignment:
| Q |
11 |
ggagcagatggatttaagagaatgtccttagtttggtggtcagattgcatgtaattgtggttgaggttttctacactctggtagaggttgcctaagctcc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17547293 |
ggagcagatggatttaagagaatgtccttagtttggtggtcagattgcatgtaattgtggttgaggttttctacactctggtagaggttgcctaagctcc |
17547392 |
T |
|
| Q |
111 |
caaccatttcgttcttgctgagaagctttactacgttgcctataggcaagcatagcatgttgaaaagaaagtctatgacgggtttagatgcttcagcaaa |
210 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17547393 |
caaccatttcgttcttgttgagaagctttactacgttacctataggcaagcatagcatgttgaaaagaaagtctacgacgggtttagatgcttcagcaaa |
17547492 |
T |
|
| Q |
211 |
gagaactctttcattctttgtgtcaataagaagtttgagggtcagtttggtggtggaagaagaagacatattgaaatgcacacgtcaaaaatcaatacct |
310 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
17547493 |
gagaactctttcaatctttgtgtcaataagaagtttgagggtcagtttggtggtggaagaagaagacatattgaaatacacacgtcaaaaatcgatacct |
17547592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 272
Target Start/End: Complemental strand, 17020210 - 17020108
Alignment:
| Q |
170 |
ttgaaaagaaagtctatgacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagtttgagggtcagtttggtggtggaag |
269 |
Q |
| |
|
||||||||||| ||||| || | ||| |||||||||||||| |||||| | |||||| | ||||||||||||||||||||||||| |||| ||||||||| |
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| T |
17020210 |
ttgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaactttctcattcatggtgtcaataagaagtttgagggtcactttgttggtggaag |
17020111 |
T |
|
| Q |
270 |
aag |
272 |
Q |
| |
|
||| |
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| T |
17020110 |
aag |
17020108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 272
Target Start/End: Complemental strand, 17550647 - 17550545
Alignment:
| Q |
170 |
ttgaaaagaaagtctatgacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagtttgagggtcagtttggtggtggaag |
269 |
Q |
| |
|
||||||||||| ||||| || | ||| |||||||||||||| |||||| | |||||| | ||||||||||||||||||||||||| |||| ||||||||| |
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|
| T |
17550647 |
ttgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaactttctcattcatggtgtcaataagaagtttgagggtcactttgttggtggaag |
17550548 |
T |
|
| Q |
270 |
aag |
272 |
Q |
| |
|
||| |
|
|
| T |
17550547 |
aag |
17550545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 272
Target Start/End: Complemental strand, 17522481 - 17522266
Alignment:
| Q |
57 |
gcatgtaattgtggttgaggttttctacactctggtagaggttgcctaagctcccaaccatttcgttcttgctgagaagctttactacgttgcctatagg |
156 |
Q |
| |
|
||||| |||| || ||||||||||| ||||||| || || || |||||||| |||||||| | || ||| || ||||| || || |||| || || |
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|
| T |
17522481 |
gcatgcaattctgattgaggttttcaacactctcatacagattccctaagctaccaaccatgccatttgcgcttagtagcttcacaacagtgccgattgg |
17522382 |
T |
|
| Q |
157 |
caagcatagcatgttgaaaagaaagtctatgacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagtttgagggtcagt |
256 |
Q |
| |
|
||||||||||| ||||||||||||||| | || | ||| || |||||||||||||||||| | | |||||||||||| |||||||| || | || || | |
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| T |
17522381 |
caagcatagcaagttgaaaagaaagtcaaccacagcttttgaagcttcagcaaagagaactttctgattctttgtgtcgataagaagcttcatggacact |
17522282 |
T |
|
| Q |
257 |
ttggtggtggaagaag |
272 |
Q |
| |
|
||||||| ||||||| |
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| T |
17522281 |
ttggtggaagaagaag |
17522266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 276
Target Start/End: Original strand, 52145622 - 52145843
Alignment:
| Q |
55 |
ttgcatgtaattgtggttgaggttttctacactctggtagaggttgcctaagctcccaaccatttcgttcttgctgagaagctttactacgttgcctata |
154 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||||| || || || ||||| || |||| ||| | || |||| || ||||| || ||| |||| || |
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| T |
52145622 |
ttgcatgcaattttggttgaggttttcaacactctgatacagatttcctaaactaccaatcatgccatttgtgcttaggagcttaaccacggtgccaatt |
52145721 |
T |
|
| Q |
155 |
ggcaagcatagcatgttgaaaagaaagtctatgacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagtttgagggtca |
254 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| || | ||| || |||||||||||||||||| | ||||||||||| || |||||||| || | | || |
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| T |
52145722 |
ggcaagcatagcaaattgaacagaaagtctattacagattttgaagcttcagcaaagagaactttctcattctttgtatctataagaagcttcaaagaca |
52145821 |
T |
|
| Q |
255 |
gtttggtggtggaagaagaaga |
276 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
52145822 |
ctttggtggtagaagaagaaga |
52145843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 243
Target Start/End: Original strand, 52142106 - 52142292
Alignment:
| Q |
57 |
gcatgtaattgtggttgaggttttctacactctggtagaggttgcctaagctcccaaccatttcgttcttgctgagaagctttactacgttgcctatagg |
156 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| || || || |||||||| |||||||| | || ||| || ||||| || || |||| || || |
|
|
| T |
52142106 |
gcatgtaattctggttgaggttttcaacactctcatacagattccctaagctaccaaccatgccattagcgcttagcagcttcacaacagtgccgattgg |
52142205 |
T |
|
| Q |
157 |
caagcatagcatgttgaaaagaaagtctatgacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaag |
243 |
Q |
| |
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||| ||||||| ||||||||||||||||| ||| | ||| || |||||||||||||||||| | | |||||||||||| |||||||| |
|
|
| T |
52142206 |
caaacatagcaagttgaaaagaaagtctacgacagcttttgaagcttcagcaaagagaactttctgattctttgtgtcgataagaag |
52142292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 275
Target Start/End: Original strand, 52133834 - 52133955
Alignment:
| Q |
154 |
aggcaagcatagcatgttgaaaagaaagtctatgacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagtttgagggtc |
253 |
Q |
| |
|
|||||||| |||| ||| || ||||| ||||| || | ||| || |||||||| || |||||| | ||||| || |||||||| ||||||||||||||| |
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| T |
52133834 |
aggcaagcgaagcaagttaaagagaaaatctatcacagctttggaagcttcagcgaacagaactttgtcatttttagtgtcaatgagaagtttgagggtc |
52133933 |
T |
|
| Q |
254 |
agtttggtggtggaagaagaag |
275 |
Q |
| |
|
| |||| ||| |||||||||| |
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| T |
52133934 |
actttgttgggagaagaagaag |
52133955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 52155007 - 52155099
Alignment:
| Q |
154 |
aggcaagcatagcatgttgaaaagaaagtctatgacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagttt |
246 |
Q |
| |
|
|||||||| |||||||| || |||||| |||| |||| ||| |||||||||||||| | |||| | ||||||| |||||| || |||||||| |
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| T |
52155007 |
aggcaagcctagcatgtggagaagaaaatctactacggattttgatgcttcagcaaaaacaactttctcattctctgtgtctatcagaagttt |
52155099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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