View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1507-Insertion-4 (Length: 951)
Name: NF1507-Insertion-4
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507-Insertion-4 |
 | |
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| [»] chr5 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 512; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 286 - 829
Target Start/End: Complemental strand, 44957144 - 44956601
Alignment:
| Q |
286 |
aaccccaccagcctcatcaatccaaggaacattgagagtcaactttccatcacccagccactcaaacgccacttcagaaccattcaattgaaacttcttt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
44957144 |
aaccccaccagcctcatcaatccaaggaacattgagagtcaacttttcatcacccatccactcaaacgccacttcaaaaccattcaattgaaacttcttt |
44957045 |
T |
|
| Q |
386 |
ggtgattcacttgaataagcaaggaaattcccaccacctttaaccttaatctttgcaccactttcaacatattccaaatcaagaattgttccaccactat |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44957044 |
ggtgattcacttgaataagcaaggaaattcccaccacctttaaccttaatctttgcaccactttcaacatattccaaatcaagaattgttccaccactat |
44956945 |
T |
|
| Q |
486 |
tgaacatgtttgtcaatccaattggtgcaaatttgatggtgccaccaaactttttgactggaacaaaattgtatagctcaaaagtggatggttgaatgat |
585 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
44956944 |
tgaacatatttgtcaatccaattggtgcaaatttgatggtgccaccaaactttttgacttgaacaaaattgtatagctcaaatgtggatggttgaatgat |
44956845 |
T |
|
| Q |
586 |
aaattgaattgattcagaatttggagtcatcaaacaaagttcttcagcttgattgaagtagaccacatactcttctgccttacccaaatgagatgcttct |
685 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44956844 |
aaattgaattgattcagaatttggagtcatcaaacaaagttcttcagcttgattgaagtagaccacatactcttctgctttacccaaatgagatgcttct |
44956745 |
T |
|
| Q |
686 |
ttcttctgatcccattcaacttcagttacatgcacagtaccaactattggattgtagcattcagggaatcctctaaacttgtgctcttttgggtcccacc |
785 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
44956744 |
ttcttctgatcccattcaacttcagttacatgcacagtaccaactattggattgtagcattcagggaatcctctaagcttgtgctcttttgggtcccacc |
44956645 |
T |
|
| Q |
786 |
ctgccccttgacagttgaaagcaccaatcactcctccatactgt |
829 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44956644 |
ctgccccttgacagttgaaagcaccaatcactcctccatactgt |
44956601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 273 - 830
Target Start/End: Original strand, 43561912 - 43562469
Alignment:
| Q |
273 |
ttgccaaatcagaaaccccaccagcctcatcaatccaaggaacattgagagtcaactttccatcacccagccactcaaacgccacttcagaaccattcaa |
372 |
Q |
| |
|
|||||||||||||||| |||| |||||| |||||||||||||||||||||| || ||||||||||| ||||||||||| |||| | ||||||||||| |
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|
| T |
43561912 |
ttgccaaatcagaaacaccacaagcctcttcaatccaaggaacattgagagataattttccatcacctagccactcaaaatccacattagaaccattcag |
43562011 |
T |
|
| Q |
373 |
ttgaaacttctttggtgattcacttgaataagcaaggaaattcccaccacctttaaccttaatctttgcaccactttcaacatattccaaatcaagaatt |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
43562012 |
ttgaaacttctttggtgattcacttgaataagcaaggaaattcccaccacctttaaccttaatcttagcaccactttcaacatattccaaatcaagaatt |
43562111 |
T |
|
| Q |
473 |
gttccaccactattgaacatgtttgtcaatccaattggtgcaaatttgatggtgccaccaaactttttgactggaacaaaattgtatagctcaaaagtgg |
572 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
43562112 |
gttccaccactgttgaacatgtttgtcaatccaatgggtgcaaatttgatgttgccaccaaactttgtgactggaacaaaattgtatagctcaaatgtgg |
43562211 |
T |
|
| Q |
573 |
atggttgaatgataaattgaattgattcagaatttggagtcatcaaacaaagttcttcagcttgattgaagtagaccacatactcttctgccttacccaa |
672 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| ||||||||||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||||||| |
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|
| T |
43562212 |
atggttgaatgataaagtgaattggttcagattttggagtcatcaaagaaagttcttgagcttgattgaagtagactgcatattcttctgccttacccaa |
43562311 |
T |
|
| Q |
673 |
atgagatgcttctttcttctgatcccattcaacttcagttacatgcacagtaccaactattggattgtagcattcagggaatcctctaaacttgtgctct |
772 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| || |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43562312 |
atgagatgcttctttcttctgattccattcaacttcagttacatgcacagtgccagttataggcttgtagcattcagggaatcccctaaacttgtgctct |
43562411 |
T |
|
| Q |
773 |
tttgggtcccaccctgccccttgacagttgaaagcaccaatcactcctccatactgtt |
830 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
43562412 |
tttgggtcccacccggccccttgacagttgaatgcaccaatcactcccccatactgtt |
43562469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 43561782 - 43561839
Alignment:
| Q |
198 |
gttaagagaaatgttacgatcaa-tagtcgcacattgtattaatcataaataaacttc |
254 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||| |||||| |||||||| |
|
|
| T |
43561782 |
gttaagagaaatgttacgatcaattcgtcgcacattgtattattcataagtaaacttc |
43561839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 273 - 828
Target Start/End: Original strand, 36429639 - 36430194
Alignment:
| Q |
273 |
ttgccaaatcagaaaccccaccagcctcatcaatccaaggaacattgagagtcaactttccatcacccagccactcaaacgccacttcagaaccattcaa |
372 |
Q |
| |
|
||||||| ||||| || |||| |||||| |||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36429639 |
ttgccaattcagacacaccactagcctcttcaatccaagaaacattgagagacagttttccatcacccagccactcaaaagccacttcagaaccattcaa |
36429738 |
T |
|
| Q |
373 |
ttgaaacttctttggtgattcacttgaataagcaaggaaattcccaccacctttaaccttaatctttgcaccactttcaacatattccaaatcaagaatt |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| ||| ||||||||||||| |||| | |
|
|
| T |
36429739 |
ttgaaacttctttggtgattcacttgaataagcaaggaaatttccaccacctttaacctgaatcttagcaccactctcagcatattccaaatctagaact |
36429838 |
T |
|
| Q |
473 |
gttccaccactattgaacatgtttgtcaatccaattggtgcaaatttgatggtgccaccaaactttttgactggaacaaaattgtatagctcaaaagtgg |
572 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||||||||||||||| |||| || | |||| | | ||||||||||||||||| |||||| |||| |
|
|
| T |
36429839 |
gttccaccactgttgaacatatttgtcaacccaattggtgcaaatttgatgttgccccctagctttgtaagtggaacaaaattgtataactcaaaggtgg |
36429938 |
T |
|
| Q |
573 |
atggttgaatgataaattgaattgattcagaatttggagtcatcaaacaaagttcttcagcttgattgaagtagaccacatactcttctgccttacccaa |
672 |
Q |
| |
|
|||| ||||||||| | | |||| |||||| ||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36429939 |
atggctgaatgatatacttgattggttcagattttggggtcatcaaacgaagttcttcagcttgattgaagtagactacatactcttctgccttacccaa |
36430038 |
T |
|
| Q |
673 |
atgagatgcttctttcttctgatcccattcaacttcagttacatgcacagtaccaactattggattgtagcattcagggaatcctctaaacttgtgctct |
772 |
Q |
| |
|
||||||||| | |||||| ||| |||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36430039 |
atgagatgcctatttcttttgagcccattcaacttcagttacatgcacagttccagttattggcttgtagcattcagggaatcccctaaacttgtgctct |
36430138 |
T |
|
| Q |
773 |
tttgggtcccaccctgccccttgacagttgaaagcaccaatcactcctccatactg |
828 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36430139 |
tttggatcccacccggccccttgacagttgaaagcaccaatcactcctccatactg |
36430194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 841 - 951
Target Start/End: Original strand, 40670176 - 40670287
Alignment:
| Q |
841 |
tgctgatacacatacatacttatgtggcaaccccctttgtacatcttctatgtggcatctttt-attaattatattaggggtaattttgcaaattcacac |
939 |
Q |
| |
|
|||||| ||||| |||| |||||||||||| |||| || |||| || |||||| |||| |||| |||||||| |||| ||| ||||||| |||||||||| |
|
|
| T |
40670176 |
tgctgaaacacaaacattcttatgtggcaaacccccttatacacctcctatgtagcatttttttattaattacattaagggcaattttgtaaattcacac |
40670275 |
T |
|
| Q |
940 |
ccacttctctcc |
951 |
Q |
| |
|
|| || |||||| |
|
|
| T |
40670276 |
ccgctgctctcc |
40670287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 277 - 835
Target Start/End: Complemental strand, 43977096 - 43976538
Alignment:
| Q |
277 |
caaatcagaaaccccaccagcctcatcaatccaaggaacattgagagtcaactttccatcacccagccactcaaacgccacttcagaaccattcaattga |
376 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||| || ||| |||||||||| || ||||||||| |||||||||||||||||||||||| |
|
|
| T |
43977096 |
caaatcagaaactccaccagcctcttcaatccaaggaacattgaaagacaattttccatcactcaaccactcaaaagccacttcagaaccattcaattga |
43976997 |
T |
|
| Q |
377 |
aacttctttggtgattcacttgaataagcaaggaaattcccaccacctttaaccttaatctttgcaccactttcaacatattccaaatcaagaattgttc |
476 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||| ||||||||||||||||| ||| | |||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
43976996 |
cacttctctggtgattcatttgaataagcaaggaaatttccaccacctttaaccttgatcatagcacaactttcaacatattccaaatctagaattgttc |
43976897 |
T |
|
| Q |
477 |
caccactattgaacatgtttgtcaatccaattggtgcaaatttgatggtgccaccaaactttttgactggaacaaaattgtatagctcaaaagtggatgg |
576 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||| ||||||| | |||| |||| |||||||||||||||| |||||| || ||||| |
|
|
| T |
43976896 |
caccactgttgaacatgtttgccaatccaattggtgcaaatttgatactgccacctagctttgtgacaggaacaaaattgtataactcaaaggtagatgg |
43976797 |
T |
|
| Q |
577 |
ttgaatgataaattgaattgattcagaatttggagtcatcaaacaaagttcttcagcttgattgaagtagaccacatactcttctgccttacccaaatga |
676 |
Q |
| |
|
|||||||||||||| |||| |||||| || ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
43976796 |
ttgaatgataaatttgattggttcagacttcggagtcatcaaacaaagttcttcggcttgattcaagtagactacatactcttcagccttgcccaaatgc |
43976697 |
T |
|
| Q |
677 |
gatgcttctttcttctgatcccattcaacttcagttacatgcacagtaccaactattggattgtagcattcagggaatcctctaaacttgtgctcttttg |
776 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||| |||| ||| || ||||||||||||||||| || || || ||||| |||||| |
|
|
| T |
43976696 |
actgcttctttcttttgatcccattcaacctcagttacatgcacagaaccagttatgggcttgtagcattcagggaagcccctgaatgtgtgcacttttg |
43976597 |
T |
|
| Q |
777 |
ggtcccaccctgccccttgacagttgaaagcaccaatcactcctccatactgttaaata |
835 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43976596 |
ggtcccaccctgacccttgacagttgaaagcaccaatcactcctccatactgttgaata |
43976538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 838 - 951
Target Start/End: Original strand, 31858862 - 31858975
Alignment:
| Q |
838 |
gagtgctgatacacatacatacttatgtggcaaccccctttgtacatcttctatgtggcatcttttattaattatattaggggtaattttgcaaattcac |
937 |
Q |
| |
|
||||||||||||||| |||| |||| |||||| |||| | |||| |||||||||||||| |||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
31858862 |
gagtgctgatacacaaacatcattatatggcaaacccccctatacaccttctatgtggcattgtttattaattatattaagggtaattttgtaaattcac |
31858961 |
T |
|
| Q |
938 |
acccacttctctcc |
951 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
31858962 |
acccacttctctcc |
31858975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 836 - 951
Target Start/End: Original strand, 2915742 - 2915857
Alignment:
| Q |
836 |
tagagtgctgatacacatacatacttatgtggcaaccccctttgtacatcttctatgtggcatcttttattaattatattaggggtaattttgcaaattc |
935 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| |||| || |||| || |||||| |||| |||||||||||| |||| ||| ||||||| |||||| |
|
|
| T |
2915742 |
tagagtgctgatacacaaacattcttatgtggcaaacccccttatacacctcctatgtagcattttttattaattacattaagggcaattttgtaaattc |
2915841 |
T |
|
| Q |
936 |
acacccacttctctcc |
951 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
2915842 |
acacccactgctctcc |
2915857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 843 - 928
Target Start/End: Complemental strand, 6310331 - 6310245
Alignment:
| Q |
843 |
ctgatacacatacatacttatgtggcaa-ccccctttgtacatcttctatgtggcatcttttattaattatattaggggtaattttg |
928 |
Q |
| |
|
|||||||||||| | ||||| |||||| ||||||||||||| | |||||||||| ||| ||||||| ||||| ||||||||||| |
|
|
| T |
6310331 |
ctgatacacatatacacttagctggcaaaccccctttgtacaccccatatgtggcatttttaattaattttattaagggtaattttg |
6310245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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