View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507-Insertion-41 (Length: 299)
Name: NF1507-Insertion-41
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507-Insertion-41 |
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| [»] chr5 (5 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 116 - 299
Target Start/End: Original strand, 20686189 - 20686372
Alignment:
| Q |
116 |
caagagtggctgcttttgttatttattttcgctattatttgaagattataatttgaaatattgacgttgtgtcgttcctgctttgccttttcaatattct |
215 |
Q |
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| T |
20686189 |
caagagtggctgcttttgttatttattttcgctattatttgaagattataatttgaaatattgatgttgtgtcgttcctgctttgctttttcaatattct |
20686288 |
T |
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| Q |
216 |
atatcatgattttttccaaatttgccaggaaacctgcgtcaaatcataaaggagccataagttgctgttactgccattgtcgct |
299 |
Q |
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| T |
20686289 |
atatcatgattttttccaaatttgccaggaaacctgcgtcaaatcataaaggagccataagttgttgttactgccattgtcgct |
20686372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 119 - 295
Target Start/End: Complemental strand, 1749018 - 1748842
Alignment:
| Q |
119 |
gagtggctgcttttgttatttattttcgctattatttgaagattataatttgaaatattgacgttgtgtcgttcctgctttgccttttcaatattctata |
218 |
Q |
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| T |
1749018 |
gagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcttgctttgctttttccctattctata |
1748919 |
T |
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| Q |
219 |
tcatgattttttccaaatttgccaggaaacctgcgtcaaatcataaaggagccataagttgctgttactgccattgt |
295 |
Q |
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| T |
1748918 |
ttatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctattgt |
1748842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 20686385 - 20686456
Alignment:
| Q |
228 |
tttccaaatttgccaggaaacctgcgtcaaatcataaaggagccataagttgctgttactgccattgtcgct |
299 |
Q |
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| T |
20686385 |
tttccaaatttgccaggaaacctgcgtcaaatcgtaaaggagccataagttgttgttactgccattgtcgct |
20686456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 1749152 - 1749082
Alignment:
| Q |
8 |
aaatggttgtaaatattgatattgatatacatcaactttggcttgaggcagatttttatttaggtggtcaa |
78 |
Q |
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| T |
1749152 |
aaatgattataaatattgatattgatatacatcaactttggcttgaggcagatttttatttaggtggtcaa |
1749082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 20686092 - 20686155
Alignment:
| Q |
8 |
aaatggttgtaaatattgatattgatatacatcaactttggcttgaggcagatttttatttaggtggtca |
77 |
Q |
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| T |
20686092 |
aaatggttgtaaatattgatattgat------caactttggcttgaggcagatttttatttaggtggtca |
20686155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 119 - 295
Target Start/End: Complemental strand, 42383925 - 42383749
Alignment:
| Q |
119 |
gagtggctgcttttgttatttattttcgctattatttgaagattataatttgaaatattgacgttgtgtcgttcctgctttgccttttcaatattctata |
218 |
Q |
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| T |
42383925 |
gagtggctgcttttgctatttcttttcgctattagttgaagattataatttgaaatagcgatgttgtgtcgttcttgctttgctttttccctattctata |
42383826 |
T |
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| Q |
219 |
tcatgattttttccaaatttgccaggaaacctgcgtcaaatcataaaggagccataagttgctgttactgccattgt |
295 |
Q |
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| T |
42383825 |
ttatgattttttccaaatttgctaggaaacctacatcaaatcataaaggaaccataagttgttattactgctattgt |
42383749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 42384059 - 42383989
Alignment:
| Q |
8 |
aaatggttgtaaatattgatattgatatacatcaactttggcttgaggcagatttttatttaggtggtcaa |
78 |
Q |
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| T |
42384059 |
aaatgattataaatattgatattgatatacatcaactttggcttgaggcagatttttatttaggtggtcaa |
42383989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 84930 - 84869
Alignment:
| Q |
210 |
tattctatatcatgattttttccaaatttgccaggaaacctgcgtcaaatcataaaggagcc |
271 |
Q |
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| T |
84930 |
tattctatattatgattttttccaaatttgctaggaaacctacatcaaatcataaaggagcc |
84869 |
T |
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