View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507-Insertion-5 (Length: 897)
Name: NF1507-Insertion-5
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 540; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 7 - 690
Target Start/End: Original strand, 29325495 - 29326188
Alignment:
| Q |
7 |
acttatatcaggaacaattgtcgtaaatatagctttggttaaatttatcattcaaatcattaatttctattcttcaatgtacaaccaatagcatataagt |
106 |
Q |
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| T |
29325495 |
acttatatcaggaacaattgtcgtaaatatagctttggttaaatttatcattcaaatcattaatttctattgttcaatgtacaaccaatagcataaaagt |
29325594 |
T |
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| Q |
107 |
ttactcagaacagtaccat---------------------gaaataagttaattattttccattgattgatagcttggataagatacttcaaaaatcatc |
185 |
Q |
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| T |
29325595 |
ttactcagaacagtaccattaatgaattttgcagcaccatgaaataagttaa--attttccattgattgatagcttggataagacacttcaaaaatcatc |
29325692 |
T |
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| Q |
186 |
ctaaatgctgaacataagttgtaaatattaaacaaaaaagaagggacgtgagaaataaatcataagctacagttaggtcggtagttgagcttattggata |
285 |
Q |
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| T |
29325693 |
ctaaatgctgaacataagttgtaaatattaaacaaaaaagaagggacgtgagaaataaatcataagctacagttaggtcggtagttgagcttattggata |
29325792 |
T |
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| Q |
286 |
atgcttgtcaatattgtacacaagcaagactagaaaaataacctagataaggttttgaaaattttatttgaatatttgaaaatttaaaaacagtaggtta |
385 |
Q |
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| T |
29325793 |
atgcttgtcaatattgtacacaagcaagactagaaaaataacctagataaggttttgaaaaatttatttgaatatctgaaaatttaaaaacagtaggtta |
29325892 |
T |
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| Q |
386 |
agcaaagaattgtaacagattagatggaagaaatcgatggactcgaaaaaggagaaagtcagtcaccattttgactagttgaatagaaactctaggaaaa |
485 |
Q |
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| T |
29325893 |
aacaaagaattgtaacagattagatggaagaaatcgatggactcgaaaaaggagaaagtcagtcaccattttgactagttgaatagaaactctagaaaaa |
29325992 |
T |
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| Q |
486 |
gaagggnnnnnnnngtcgaaagagcacattgcacggagaagatagacagccaatgcatgtggggtgcgattatgtctttaattagtgactgtttaggtta |
585 |
Q |
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| T |
29325993 |
aaa---------aagtcaaaagagcacattgcacggagaagatagacagccaatgcatgtggggtgcgattatgtctttaattagtgactgtttagatta |
29326083 |
T |
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| Q |
586 |
agacaggaataaggaccagattaggtgataaaaagagatgatttatgcagaaaaacatctttgttctatcacgcaatttgtggttaaattcacagttcca |
685 |
Q |
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| T |
29326084 |
agacaggaataaggaccagattaggtgataaaaagaggtgatttatgcagaaaaacatctttgttctatcacgcaatttgtggttaaattcacagttcca |
29326183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 742 - 873
Target Start/End: Original strand, 29326184 - 29326315
Alignment:
| Q |
742 |
taccaaaacttatgttttatagtaatttgttgtatgagtcaaatctcatggtatactcaatgaagggatgcttgcggaaaaggaaaaacacatcgtaaaa |
841 |
Q |
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| T |
29326184 |
taccaaaaattatgttttatagtaatttgttatatgagtcaaatctcatggtatactcaacgaagggatgcttgccgaaaaggaaaaacacatcgtaaaa |
29326283 |
T |
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| Q |
842 |
acagagtataaaattactgtacatcttcaagt |
873 |
Q |
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| T |
29326284 |
acagagtataaaactactgtacatcttcaagt |
29326315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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