View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1507-Insertion-6 (Length: 845)

Name: NF1507-Insertion-6
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1507-Insertion-6
NF1507-Insertion-6
[»] chr3 (16 HSPs)
chr3 (167-835)||(35096919-35097583)
chr3 (167-463)||(35110159-35110452)
chr3 (175-472)||(35102818-35103116)
chr3 (535-691)||(13234435-13234591)
chr3 (740-835)||(35110572-35110667)
chr3 (7-84)||(35096759-35096836)
chr3 (739-821)||(35103222-35103304)
chr3 (626-686)||(51830955-51831015)
chr3 (626-686)||(20551382-20551442)
chr3 (629-686)||(38441599-38441656)
chr3 (629-686)||(40811368-40811425)
chr3 (629-686)||(40816268-40816325)
chr3 (629-686)||(42344723-42344780)
chr3 (626-686)||(6117054-6117114)
chr3 (626-686)||(10266106-10266166)
chr3 (7-79)||(35109985-35110057)
[»] chr4 (6 HSPs)
chr4 (535-691)||(18302269-18302425)
chr4 (630-691)||(18032080-18032141)
chr4 (613-691)||(48851412-48851490)
chr4 (626-686)||(29323129-29323189)
chr4 (626-686)||(49626319-49626379)
chr4 (626-686)||(31068133-31068193)
[»] chr7 (11 HSPs)
chr7 (535-691)||(6944665-6944821)
chr7 (546-691)||(5268327-5268472)
chr7 (535-635)||(48942841-48942941)
chr7 (615-691)||(30129143-30129219)
chr7 (626-686)||(12173140-12173200)
chr7 (626-686)||(21908132-21908192)
chr7 (626-686)||(3223648-3223708)
chr7 (626-686)||(29104982-29105042)
chr7 (626-686)||(21981971-21982031)
chr7 (615-655)||(41932601-41932641)
chr7 (626-686)||(37080387-37080448)
[»] chr8 (9 HSPs)
chr8 (566-691)||(8768573-8768698)
chr8 (640-691)||(42913065-42913116)
chr8 (626-686)||(19392130-19392190)
chr8 (626-686)||(1553406-1553466)
chr8 (626-685)||(12318112-12318171)
chr8 (626-686)||(35466989-35467049)
chr8 (538-580)||(37241890-37241932)
chr8 (626-672)||(38458472-38458518)
chr8 (626-686)||(5685041-5685101)
[»] chr2 (8 HSPs)
chr2 (547-691)||(44511568-44511712)
chr2 (630-691)||(37874715-37874776)
chr2 (626-686)||(39164415-39164475)
chr2 (628-686)||(35833879-35833937)
chr2 (628-671)||(5156750-5156793)
chr2 (626-686)||(14709742-14709803)
chr2 (626-686)||(20912588-20912648)
chr2 (626-686)||(42632385-42632444)
[»] chr1 (9 HSPs)
chr1 (615-690)||(20015281-20015356)
chr1 (626-686)||(8263444-8263504)
chr1 (626-686)||(15232199-15232259)
chr1 (626-686)||(16291296-16291356)
chr1 (626-686)||(17202278-17202338)
chr1 (626-686)||(1823973-1824033)
chr1 (626-686)||(16028833-16028893)
chr1 (538-584)||(10986650-10986696)
chr1 (626-686)||(16279858-16279918)
[»] chr6 (7 HSPs)
chr6 (538-651)||(14174511-14174625)
chr6 (538-651)||(14179047-14179161)
chr6 (626-686)||(10130316-10130376)
chr6 (626-686)||(26241831-26241891)
chr6 (628-686)||(25312298-25312356)
chr6 (628-686)||(26199792-26199850)
chr6 (628-670)||(8483001-8483043)
[»] chr5 (4 HSPs)
chr5 (629-686)||(27426612-27426669)
chr5 (626-686)||(26719994-26720054)
chr5 (626-686)||(26989740-26989800)
chr5 (626-686)||(1949375-1949435)
[»] scaffold0017 (1 HSPs)
scaffold0017 (626-686)||(188899-188959)


Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 167 - 835
Target Start/End: Original strand, 35096919 - 35097583
Alignment:
Q  167 cttgttccgactctcgagtgagtccctctgttatcctcaactttcaacctggtgaagctttcttgattcgaaacattgctaacatggtccctccatttaa 266  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  35096919 cttgttccgactctcgagtgagtccctctgttatcctgaactttcaacctggtgaagctttcatggttcgaaacattgctaacatggtccctccatttaa 35097018  T
Q  267 tcaggtctaattcactgtttttctaaacaaatgaattgctatatatgatatacacattattgaagaatttttaataattaactttctattccacggttag 366  Q
    ||||||||| |||||| |||||||||| ||||||||| |||||  ||||||||||||||||||||| |||||||||||||| |||||||||||| ||||     
T  35097019 tcaggtctacttcactatttttctaaagaaatgaatttctata--tgatatacacattattgaagagtttttaataattaaatttctattccacagttaa 35097116  T
Q  367 gatacagtggagttggtgcaacccttgagtatgctattacagctctaaaggtaagtgattagcttctattcaaaagtgttttaaaatttgtttgtgattg 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35097117 gatacagtggagttggtgcaacccttgagtatgctattacagctctaaaggtaagtgatcagcttctattcaaaagtgttttaaaatttgtttgtgattg 35097216  T
Q  467 tgacatgacatgttaaggtttctaactctaatgtgattgtgattgtgattgaggctgcatcaataatcatcattttggataatgattctaacaaaaatcc 566  Q
    ||||||||||||||||||||| |||||||||      |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35097217 tgacatgacatgttaaggtttgtaactctaa------tgtgattgcgattgaggctgaatcaataatcatcattttggataatgattctaacaaaaatcc 35097310  T
Q  567 attttggggttataataataatttttattcttaaataatatcagaggattttgccatcatcgtggaaattccatttttcctagaattaagctcttcctta 666  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35097311 attttggggctataataataatttttattctcaaataatatcagagtattttgccatcatcgtggaaattccattttttctagaattaagctcttcctta 35097410  T
Q  667 gaggagacagaaatcataaaatctttttgccataactttctaaaagaaaaacaaatcattatac----nnnnnnnnggataaaaattaattacttttttc 762  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||    
T  35097411 gaggaggtagaaatcataaaatctttttgccataactttctaaaagaaaaacaaatcattatacttttttttttttggataaaaattaattacttttttc 35097510  T
Q  763 aggtggagaacatcttggttattggacatagtcgctgcggcggaatctcaaggcttatgagtcatccagagga 835  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35097511 aggtggagaacatcttggttattggacatagtcgctgcggcggaatctcaaggcttatgaatcatccagagga 35097583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 167 - 463
Target Start/End: Original strand, 35110159 - 35110452
Alignment:
Q  167 cttgttccgactctcgagtgagtccctctgttatcctcaactttcaacctggtgaagctttcttgattcgaaacattgctaacatggtccctccatttaa 266  Q
    ||||||| |||||| |||||||||||||| ||||||| |||||||||||||| ||||||||| || | ||||||||||||||||||||||||||||||||    
T  35110159 cttgttctgactctagagtgagtccctctattatcctgaactttcaacctggagaagctttcatggtccgaaacattgctaacatggtccctccatttaa 35110258  T
Q  267 tcaggtctaattcactgtttttctaaacaaatgaattgctatatatgatatacacattattgaagaatttttaataattaactttctattccacggttag 366  Q
    ||||||||| |||||| |||||||||| ||||||||| |||||  ||||||||||||||||||||| |||||||||||||| |||||||||||| ||||     
T  35110259 tcaggtctacttcactatttttctaaagaaatgaatttctata--tgatatacacattattgaagagtttttaataattaaatttctattccacagttaa 35110356  T
Q  367 gatacagtggagttggtgcaacccttgagtatgctattacagctctaaaggtaagtgattagcttctattcaaaagtgttttaaaatttgtttgtga 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | |||| | ||||||||||||| || |||||    
T  35110357 gatacagtggagttggtgcaacccttgagtatgctattacagctctaaaggtaa-tgtttagcttttgttcatatgtgttttaaaattagtgtgtga 35110452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 175 - 472
Target Start/End: Original strand, 35102818 - 35103116
Alignment:
Q  175 gactctcgagtgagtccctctgttatcctcaactttcaacctggtgaagctttcttgattcgaaacattgctaacatggtccctccatttaatcaggtct 274  Q
    |||||| |||||||||||||| ||||||| |||||||||| ||| ||||||||| || | |||||||||||||||||||||||| |||||||||||||||    
T  35102818 gactctagagtgagtccctctattatcctgaactttcaacatggagaagctttcatggtccgaaacattgctaacatggtccctacatttaatcaggtct 35102917  T
Q  275 aattcactgtttttctaaacaaatgaattgctatatatgatataca---cattattgaagaatttttaataattaactttctattccacggttaggatac 371  Q
    | ||||||||||||||||||||||||||||  |||||||||||| |    ||||||||||| |||||||||||||| |||||||||||| |||| ||||     
T  35102918 acttcactgtttttctaaacaaatgaattg--atatatgatatataaattattattgaagagtttttaataattaaatttctattccacagttaagatat 35103015  T
Q  372 agt-ggagttggtgcaacccttgagtatgctattacagctctaaaggtaagtgattagcttctattcaaaagtgttttaaaatttgtttgtgattgtgac 470  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||||||| || || ||||||||||| ||||||||||||||||||| |||| ||||||    
T  35103016 agtgggagttggtgcaacccttgagtatgcaattacagctctaaaggtaa-tgtttcgcttctattcataagtgttttaaaatttgttcgtgaatgtgac 35103114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 535 - 691
Target Start/End: Original strand, 13234435 - 13234591
Alignment:
Q  535 atcattttggataatgattctaacaaaaatccattttggggttataataataatttttattcttaaataatatcagaggattttgccatcatcgtggaaa 634  Q
    ||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| | |||||||    
T  13234435 atcatttcggctaatgattctaacaaaaatccattttggggctataataataatttttattctcaaataatatcagagggttttgccatcgtggtggaaa 13234534  T
Q  635 ttccatttttcctagaattaagctcttccttagaggagacagaaatcataaaatctt 691  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13234535 ttccatttttcctagaattaagctcttccttagaggaggcagaaatcataaaatctt 13234591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 740 - 835
Target Start/End: Original strand, 35110572 - 35110667
Alignment:
Q  740 gataaaaattaattacttttttcaggtggagaacatcttggttattggacatagtcgctgcggcggaatctcaaggcttatgagtcatccagagga 835  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  35110572 gataaaaatcaattacctttttcaggtggagaacatcttggttattggacatagtcgctgcggcggtatatcaaggcttatgagtcatccagagga 35110667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 35096759 - 35096836
Alignment:
Q  7 atatatggcagcaagaacccggaactgtatgatcgacttgctaaaggccagtctcccaaggtgattaattattagatc 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35096759 atatatggcagcaagaacccggaactgtatgatcgacttgctaaaggccagtctcccaaggtgattaattattagatc 35096836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 739 - 821
Target Start/End: Original strand, 35103222 - 35103304
Alignment:
Q  739 ggataaaaattaattacttttttcaggtggagaacatcttggttattggacatagtcgctgcggcggaatctcaaggcttatg 821  Q
    |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35103222 ggataaaaattaattaatatttttaggtggagaacatcttggttattggacatagtcgctgcggtggaatctcaaggcttatg 35103304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 626 - 686
Target Start/End: Original strand, 51830955 - 51831015
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  51830955 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 51831015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 626 - 686
Target Start/End: Complemental strand, 20551442 - 20551382
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||  ||||||||||||    
T  20551442 tcgtggaaattccatttttcctagaattaagcttttccttagagtaggtagaaatcataaa 20551382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 629 - 686
Target Start/End: Original strand, 38441599 - 38441656
Alignment:
Q  629 tggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    |||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  38441599 tggaaatttcatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 38441656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 629 - 686
Target Start/End: Original strand, 40811368 - 40811425
Alignment:
Q  629 tggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    |||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  40811368 tggaaatttcatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 40811425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 629 - 686
Target Start/End: Original strand, 40816268 - 40816325
Alignment:
Q  629 tggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    |||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  40816268 tggaaatttcatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 40816325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 629 - 686
Target Start/End: Original strand, 42344723 - 42344780
Alignment:
Q  629 tggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    |||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  42344723 tggaaatttcatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 42344780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 626 - 686
Target Start/End: Complemental strand, 6117114 - 6117054
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||  ||||||||||||    
T  6117114 tcgtggaaattttatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 6117054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 626 - 686
Target Start/End: Original strand, 10266106 - 10266166
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||  || |||||||||    
T  10266106 tcgtggaaattccaattttcctagaattaagcttttccttagaggaggtagtaatcataaa 10266166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 35109985 - 35110057
Alignment:
Q  7 atatatggcagcaagaacccggaactgtatgatcgacttgctaaaggccagtctcccaaggtgattaattatt 79  Q
    ||||||| ||||||| ||| | || |||||||||||||||||||||| || || |||||||||||||||||||    
T  35109985 atatatgacagcaaggaccggaaattgtatgatcgacttgctaaaggacaatcccccaaggtgattaattatt 35110057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 6e-64; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 535 - 691
Target Start/End: Original strand, 18302269 - 18302425
Alignment:
Q  535 atcattttggataatgattctaacaaaaatccattttggggttataataataatttttattcttaaataatatcagaggattttgccatcatcgtggaaa 634  Q
    ||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| | |||||||    
T  18302269 atcatttcggctaatgattctaacaaaaatccattttggggctataataataatttttattctcaaataatatcagagggttttgccatcgtggtggaaa 18302368  T
Q  635 ttccatttttcctagaattaagctcttccttagaggagacagaaatcataaaatctt 691  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18302369 ttccatttttcctagaattaagctcttccttagaggaggcagaaatcataaaatctt 18302425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 630 - 691
Target Start/End: Original strand, 18032080 - 18032141
Alignment:
Q  630 ggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaaatctt 691  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  18032080 ggaaattccattttttctagaattaagctcttccttagaggaggcagaaatcataaaatctt 18032141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 613 - 691
Target Start/End: Complemental strand, 48851490 - 48851412
Alignment:
Q  613 gattttgccatcatcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaaatctt 691  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||||  ||||||||    
T  48851490 gatttttccatcatcgtgaaaatttcatttttcctagaattaagctcttccttagaggaggctgaaatctcaaaatctt 48851412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 626 - 686
Target Start/End: Complemental strand, 29323189 - 29323129
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||    
T  29323189 tcgtggaaattccatttttcctagaattaagcttttccttagaggaagtagaaatcataaa 29323129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 626 - 686
Target Start/End: Complemental strand, 49626379 - 49626319
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||  ||||||||||||    
T  49626379 tcgtggaaattccatttttcctagaattaagtttttccttagaggaggtagaaatcataaa 49626319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 626 - 686
Target Start/End: Complemental strand, 31068193 - 31068133
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||  ||||||||||||    
T  31068193 tcgtggaaatttcatttttcctagaattaagcttttccctagaggaggtagaaatcataaa 31068133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 2e-61; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 535 - 691
Target Start/End: Complemental strand, 6944821 - 6944665
Alignment:
Q  535 atcattttggataatgattctaacaaaaatccattttggggttataataataatttttattcttaaataatatcagaggattttgccatcatcgtggaaa 634  Q
    ||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| | | |||||    
T  6944821 atcatttcggctaatgattctaacaaaaatccattttggggctataataataatttttattctcaaataatatcagagggttttgccatcgtgggggaaa 6944722  T
Q  635 ttccatttttcctagaattaagctcttccttagaggagacagaaatcataaaatctt 691  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6944721 ttccatttttcctagaattaagctcttccttagaggaggcagaaatcataaaatctt 6944665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 546 - 691
Target Start/End: Complemental strand, 5268472 - 5268327
Alignment:
Q  546 taatgattctaacaaaaatccattttggggttataataataatttttattcttaaataatatcagaggattttgccatcatcgtggaaattccatttttc 645  Q
    |||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||||||||| |||||||||| || |||||||||||||||||    
T  5268472 taatgattctaacaaaaatccatttttgggctataataagaatttttattctcaaataatatcagagggttttgccatcgtcatggaaattccatttttc 5268373  T
Q  646 ctagaattaagctcttccttagaggagacagaaatcataaaatctt 691  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  5268372 ctagaattaagctcttccttagaggaggcagaaatcataaaatctt 5268327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 535 - 635
Target Start/End: Original strand, 48942841 - 48942941
Alignment:
Q  535 atcattttggataatgattctaacaaaaatccattttggggttataataataatttttattcttaaataatatcagaggattttgccatcatcgtggaaa 634  Q
    ||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| | |||||||    
T  48942841 atcatttcggctaatgattctaacaaaaatccattttggggctataataataatttttattctcaaataatatcagagggttttgccatcgtggtggaaa 48942940  T
Q  635 t 635  Q
    |    
T  48942941 t 48942941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 615 - 691
Target Start/End: Complemental strand, 30129219 - 30129143
Alignment:
Q  615 ttttgccatcatcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaaatctt 691  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| | ||||||| ||||||||    
T  30129219 ttttgccatcatcatggaaattcaatttttcctagaattaagatcttccttagaggaggctgaaatcacaaaatctt 30129143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 626 - 686
Target Start/End: Complemental strand, 12173200 - 12173140
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  12173200 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 12173140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 626 - 686
Target Start/End: Original strand, 21908132 - 21908192
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  21908132 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 21908192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 626 - 686
Target Start/End: Original strand, 3223648 - 3223708
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  || |||||||||    
T  3223648 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagtaatcataaa 3223708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 626 - 686
Target Start/End: Original strand, 29104982 - 29105042
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  29104982 tcgtggaaatttcatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 29105042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 626 - 686
Target Start/End: Original strand, 21981971 - 21982031
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||  |||||| |||||    
T  21981971 tcgtggaaattccatttttcctagaattatgcttttccttagaggaggtagaaattataaa 21982031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 615 - 655
Target Start/End: Complemental strand, 41932641 - 41932601
Alignment:
Q  615 ttttgccatcatcgtggaaattccatttttcctagaattaa 655  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  41932641 ttttgccatcattgtggaaattccatttttcctagaattaa 41932601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 626 - 686
Target Start/End: Original strand, 37080387 - 37080448
Alignment:
Q  626 tcgtggaaattccatttttc-ctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||  ||||||| ||||    
T  37080387 tcgtggaaattccatttttttctagaattaagcttttccttagaggaggtagaaatcctaaa 37080448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 5e-43; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 566 - 691
Target Start/End: Complemental strand, 8768698 - 8768573
Alignment:
Q  566 cattttggggttataataataatttttattcttaaataatatcagaggattttgccatcatcgtggaaattccatttttcctagaattaagctcttcctt 665  Q
    |||||||||| |||||||| |||||||||||| ||||||||||| ||| |||||||||| | ||||||||||||||||| ||||||||||||||||||||    
T  8768698 cattttggggctataataagaatttttattctcaaataatatcaaagggttttgccatcgtggtggaaattccattttttctagaattaagctcttcctt 8768599  T
Q  666 agaggagacagaaatcataaaatctt 691  Q
    ||||||| ||||||||||||||||||    
T  8768598 agaggaggcagaaatcataaaatctt 8768573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 640 - 691
Target Start/End: Original strand, 42913065 - 42913116
Alignment:
Q  640 tttttcctagaattaagctcttccttagaggagacagaaatcataaaatctt 691  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42913065 tttttcctagaattaagctcttccttagaggaggcagaaatcataaaatctt 42913116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 626 - 686
Target Start/End: Original strand, 19392130 - 19392190
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  || |||||||||    
T  19392130 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagtaatcataaa 19392190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 626 - 686
Target Start/End: Complemental strand, 1553466 - 1553406
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||| |||||||||||||||||| || |||||||||||||  ||||||||||||    
T  1553466 tcgtggaaatttcatttttcctagaattaaacttttccttagaggaggtagaaatcataaa 1553406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 626 - 685
Target Start/End: Original strand, 12318112 - 12318171
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataa 685  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||  || ||||||||    
T  12318112 tcgtggaaatttcatttttcctagaattaagcttttccttagaggaggtagtaatcataa 12318171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 626 - 686
Target Start/End: Complemental strand, 35467049 - 35466989
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||||||||||||||||||||||||| ||||| | |||||  |||| |||||||    
T  35467049 tcgtggaaattccatttttcctagaattaagcttttcctcaaaggaggtagaattcataaa 35466989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 538 - 580
Target Start/End: Complemental strand, 37241932 - 37241890
Alignment:
Q  538 attttggataatgattctaacaaaaatccattttggggttata 580  Q
    ||||||| |||||||||||||||||||||||||||||| ||||    
T  37241932 attttggctaatgattctaacaaaaatccattttggggctata 37241890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 626 - 672
Target Start/End: Complemental strand, 38458518 - 38458472
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggag 672  Q
    ||||||||||||||||||||||| ||||||| | |||||||||||||    
T  38458518 tcgtggaaattccatttttcctaaaattaagtttttccttagaggag 38458472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 626 - 686
Target Start/End: Complemental strand, 5685101 - 5685041
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    |||| |||||||||||||| ||||||||||||| ||| | |||||||  ||||||||||||    
T  5685101 tcgtagaaattccattttttctagaattaagcttttcttcagaggaggtagaaatcataaa 5685041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 2e-42; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 547 - 691
Target Start/End: Original strand, 44511568 - 44511712
Alignment:
Q  547 aatgattctaacaaaaatccattttggggttataataataatttttattcttaaataatatcagaggattttgccatcatcgtggaaattccatttttcc 646  Q
    |||||||||||||||||||||||||| || |||||||| ||||||| | || ||||||||||||||  ||||| |||||||||||||||| ||||||| |    
T  44511568 aatgattctaacaaaaatccattttgaggctataataagaatttttgtcctcaaataatatcagagagttttgtcatcatcgtggaaatttcattttttc 44511667  T
Q  647 tagaattaagctcttccttagaggagacagaaatcataaaatctt 691  Q
    ||||||||||||||||||||||||||  |||||||| ||||||||    
T  44511668 tagaattaagctcttccttagaggaggtagaaatcaaaaaatctt 44511712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 630 - 691
Target Start/End: Original strand, 37874715 - 37874776
Alignment:
Q  630 ggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaaatctt 691  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  37874715 ggaaattccattttttctagaattaagctcttccttagaggaggcagaaatcataaaatctt 37874776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 626 - 686
Target Start/End: Complemental strand, 39164475 - 39164415
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  39164475 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 39164415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 628 - 686
Target Start/End: Complemental strand, 35833937 - 35833879
Alignment:
Q  628 gtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  35833937 gtggaaatttcatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 35833879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 628 - 671
Target Start/End: Complemental strand, 5156793 - 5156750
Alignment:
Q  628 gtggaaattccatttttcctagaattaagctcttccttagagga 671  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  5156793 gtggaaattccatttttcctagaattaagcttttccttagagga 5156750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 626 - 686
Target Start/End: Original strand, 14709742 - 14709803
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagc-tcttccttagaggagacagaaatcataaa 686  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||  |||||| |||||    
T  14709742 tcgtggaaattccatttttcctagaattaagctttttccttagaggaggtagaaattataaa 14709803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 626 - 686
Target Start/End: Complemental strand, 20912648 - 20912588
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||||  ||||||| ||||    
T  20912648 tcgtggaaatttcatttttcctagaattaagcttttcgttagaggaggtagaaatcttaaa 20912588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 626 - 686
Target Start/End: Original strand, 42632385 - 42632444
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||| |||||| |||||||||| ||| |||||||||||||  ||||||||||||    
T  42632385 tcgtggaaatttcatttt-cctagaattatgcttttccttagaggaggtagaaatcataaa 42632444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 9e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 615 - 690
Target Start/End: Complemental strand, 20015356 - 20015281
Alignment:
Q  615 ttttgccatcatcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaaatct 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||||| |||||||    
T  20015356 ttttgccatcatcgtggaaattccatttttcctagaattaagctcttccttagtggaggttgaaatcacaaaatct 20015281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 626 - 686
Target Start/End: Complemental strand, 8263504 - 8263444
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  8263504 tcgtggaaatttcatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 8263444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 626 - 686
Target Start/End: Original strand, 15232199 - 15232259
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  || |||||||||    
T  15232199 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagtaatcataaa 15232259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 626 - 686
Target Start/End: Complemental strand, 16291356 - 16291296
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  || |||||||||    
T  16291356 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagtaatcataaa 16291296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 626 - 686
Target Start/End: Complemental strand, 17202338 - 17202278
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||||    
T  17202338 tcgtggaaattccatttttcctagaattaagcttttccttagtggaggtagaaatcataaa 17202278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 626 - 686
Target Start/End: Original strand, 1823973 - 1824033
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  1823973 tcgtgaaaatttcatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 1824033  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 626 - 686
Target Start/End: Original strand, 16028833 - 16028893
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    |||||||||||| |||||| ||||||||||||| |||||||||||||  ||||||||||||    
T  16028833 tcgtggaaattcaattttttctagaattaagcttttccttagaggaggtagaaatcataaa 16028893  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 538 - 584
Target Start/End: Complemental strand, 10986696 - 10986650
Alignment:
Q  538 attttggataatgattctaacaaaaatccattttggggttataataa 584  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||    
T  10986696 attttgggtaatgattctaacaaaaatccattttggggctataataa 10986650  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 626 - 686
Target Start/End: Complemental strand, 16279918 - 16279858
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    |||||||||||||||| |||||||||||||| | |||||||||||||  || |||||||||    
T  16279918 tcgtggaaattccattattcctagaattaagtttttccttagaggaggtagtaatcataaa 16279858  T

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Target: chr6 (Bit Score: 55; Significance: 4e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 538 - 651
Target Start/End: Complemental strand, 14174625 - 14174511
Alignment:
Q  538 attttggataatgattctaacaaaaatccattttggggttataataataattttt-attcttaaataatatcagaggattttgccatcatcgtggaaatt 636  Q
    ||||||| |||||||||||||||||||  ||||||||| || ||||| ||||||| ||||| ||||||||| ||||  |||| | ||| |||||||||||    
T  14174625 attttggctaatgattctaacaaaaatatattttggggctagaataagaattttttattctcaaataatattagagtgtttttctatcgtcgtggaaatt 14174526  T
Q  637 ccatttttcctagaa 651  Q
    |||||||||||||||    
T  14174525 ccatttttcctagaa 14174511  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 538 - 651
Target Start/End: Complemental strand, 14179161 - 14179047
Alignment:
Q  538 attttggataatgattctaacaaaaatccattttggggttataataataattttt-attcttaaataatatcagaggattttgccatcatcgtggaaatt 636  Q
    ||||||| |||||||||||||||||||  ||||||||| || ||||| ||||||| ||||| ||||||||| ||||  |||| | ||| |||||||||||    
T  14179161 attttggctaatgattctaacaaaaatatattttggggctagaataagaattttttattctcaaataatattagagtgtttttctatcgtcgtggaaatt 14179062  T
Q  637 ccatttttcctagaa 651  Q
    |||||||||||||||    
T  14179061 ccatttttcctagaa 14179047  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 626 - 686
Target Start/End: Original strand, 10130316 - 10130376
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||  ||||||||||||    
T  10130316 tcgtggaaattccatttttcctagaattaagcttttccttggaggaggtagaaatcataaa 10130376  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 626 - 686
Target Start/End: Original strand, 26241831 - 26241891
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||   ||||||||||||    
T  26241831 tcgtggaaatttcatttttcctagaattaagcttttccttagaggaagtagaaatcataaa 26241891  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 628 - 686
Target Start/End: Original strand, 25312298 - 25312356
Alignment:
Q  628 gtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    |||||||||| ||||| ||| |||||||||| |||||||||||||  ||||||||||||    
T  25312298 gtggaaattctattttgccttgaattaagcttttccttagaggaggtagaaatcataaa 25312356  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 628 - 686
Target Start/End: Original strand, 26199792 - 26199850
Alignment:
Q  628 gtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    |||||||||| ||||| ||| |||||||||| |||||||||||||  ||||||||||||    
T  26199792 gtggaaattctattttgccttgaattaagcttttccttagaggaggtagaaatcataaa 26199850  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 628 - 670
Target Start/End: Complemental strand, 8483043 - 8483001
Alignment:
Q  628 gtggaaattccatttttcctagaattaagctcttccttagagg 670  Q
    |||||||||||||||||||||||||||| || || ||||||||    
T  8483043 gtggaaattccatttttcctagaattaaactttttcttagagg 8483001  T

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Target: chr5 (Bit Score: 46; Significance: 9e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 629 - 686
Target Start/End: Original strand, 27426612 - 27426669
Alignment:
Q  629 tggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    |||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  27426612 tggaaattccatttttcctagaattaagcttttccttagaggaggtagaaatcataaa 27426669  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 626 - 686
Target Start/End: Complemental strand, 26720054 - 26719994
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  |||||| |||||    
T  26720054 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagaaattataaa 26719994  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 626 - 686
Target Start/End: Complemental strand, 26989800 - 26989740
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  |||||| |||||    
T  26989800 tcgtggaaattccatttttcctagaattaagcttttccttagaggaggtagaaattataaa 26989740  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 626 - 686
Target Start/End: Original strand, 1949375 - 1949435
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||| ||||||||||||| ||||||||||||| || ||||||||||  ||||||||||||    
T  1949375 tcgtgaaaattccattttttctagaattaagctttttcttagaggaggtagaaatcataaa 1949435  T

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Target: scaffold0017 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 626 - 686
Target Start/End: Original strand, 188899 - 188959
Alignment:
Q  626 tcgtggaaattccatttttcctagaattaagctcttccttagaggagacagaaatcataaa 686  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||   ||||||||||||    
T  188899 tcgtggaaattccatttttcctagaattatgcttttccttagaggaagtagaaatcataaa 188959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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