View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1507-Insertion-8 (Length: 820)
Name: NF1507-Insertion-8
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1507-Insertion-8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 782; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 782; E-Value: 0
Query Start/End: Original strand, 8 - 820
Target Start/End: Complemental strand, 51935013 - 51934203
Alignment:
| Q |
8 |
atgatgagcattgctggagtgaaaatggggtgtcaaatattgaaggaggttgctatgcaaagtgtgttgatctttcaaaggataaggaaccagatatctg |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51935013 |
atgatgagcattgctggagtgaaaatggggtgtcaaatattgaaggaggttgctatgctaagtgtgttgatctttcaaaggataaggaaccagatatctg |
51934914 |
T |
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| Q |
108 |
gaatgccatcaaatttgggacaggtaacaaacaatcttcaattaaatttgacgaaatctatggtgtcatcccacctgacaaacaattatttggcttgcat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51934913 |
gaatgccatcaaatttgggacaggtaacaaacaatcttcaattaaatttgacgaaatctatggtgtcatcccacctgacaaacaattatttggcttgcat |
51934814 |
T |
|
| Q |
208 |
gtatttgcagtgctcgaaaatgttgtttttgatgagcatacgcgagatgtagatttctcagacaaatctgtaaccggtaagtataatgacataaatgtgt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51934813 |
gtatttgcagtgctcgaaaatgttgtttttgatgagcatacgcgagatgtagatttctcagacaaatctgtaaccggtaagtataatgacataaatgtgt |
51934714 |
T |
|
| Q |
308 |
tcaagcatgataaaggatttaagaatgcaaaactgaatcatataggaagtgatatattttagatggattcctactaatgctttgcaaaataacacatatt |
407 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51934713 |
tcaagcatgataaaggatttaaaaatgcaaaactgaatcatataggaagtgatatattttagatggattcctactaatgctttgcaaaataacacatatt |
51934614 |
T |
|
| Q |
408 |
agctatgaatatggtcggcataaaacttaatgcgataaaattgctaaaagtattgattaacgctggcatgattacaatgaattggaaaattatgaaataa |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51934613 |
agctatgaatatggtcggcataaaacttaatgcgataaaattgctaaaagtattgattaacgctggcatgattacaatgaattggaaaattatgaaataa |
51934514 |
T |
|
| Q |
508 |
ctacagattgaaatcattggttatattactaactatattatatcattcaagaatcagggattaaggcttactaatagtttggagcttttgatcttgcaga |
607 |
Q |
| |
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|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51934513 |
ctacagattgaaatcattggttatattactgac--tattatatcattcaagaatcagggattaaggcttactaatagtttggagcttttgatcttgcaga |
51934416 |
T |
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| Q |
608 |
gagtactcgtgcagcgtatcctatagagtacatacctaatgctaggataccatgtgttgctccccatgcaaagaatgtcatccttctagcttgtgatgca |
707 |
Q |
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| T |
51934415 |
gaatactcgtgcagcgtatcctatagagtacatacctaatgctaggataccatgtgttgctccccatgcaaagaatgtcatccttctagcttgtgatgca |
51934316 |
T |
|
| Q |
708 |
tttggggtactccccccagtaagcaagctgagcttggcccaaacaatgtaccattttatcagtggctatacggcattggtatttgtgatccctttcattt |
807 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51934315 |
tttggggtactccccccagtaagcaagctgagcttggcccaaacaatgtaccattttatcagtggctatacggcattggtatttgtgattcctttcattt |
51934216 |
T |
|
| Q |
808 |
ctttttatgcctt |
820 |
Q |
| |
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||||||||||||| |
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| T |
51934215 |
ctttttatgcctt |
51934203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 28137662 - 28137537
Alignment:
| Q |
8 |
atgatgagcattgctggagtgaaaatggggtgtcaaatattgaaggaggttgctatgcaaagtgtgttgatctttcaaaggataaggaaccagatatctg |
107 |
Q |
| |
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|||||||||| |||||||| |||||||| || ||||| |||||||| ||||||||||||||||| ||||||| || | ||| || || || |||||||| |
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| T |
28137662 |
atgatgagcactgctggagcgaaaatggtgtctcaaacattgaaggtggttgctatgcaaagtgcattgatctctctagggagaaagagcctgatatctg |
28137563 |
T |
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| Q |
108 |
gaatgccatcaaatttgggacaggta |
133 |
Q |
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|||||| ||||| ||||| ||||||| |
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| T |
28137562 |
gaatgcaatcaagtttggtacaggta |
28137537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 601 - 788
Target Start/End: Complemental strand, 28136825 - 28136638
Alignment:
| Q |
601 |
ttgcagagagtactcgtgcagcgtatcctatagagtacatacctaatgctaggataccatgtgttgctccccatgcaaagaatgtcatccttctagcttg |
700 |
Q |
| |
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||||||| | |||||||||||| ||||| || |||||||| ||||| || | | |||||||||||| ||| || ||||||||||||| ||| | || || |
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| T |
28136825 |
ttgcagaaaatactcgtgcagcttatccaattgagtacattcctaacgcaaagttaccatgtgttggtcctcacccaaagaatgtcatacttttggcatg |
28136726 |
T |
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| Q |
701 |
tgatgcatttggggtactccccccagtaagcaagctgagcttggcccaaacaatgtaccattttatcagtggctatacggcattggta |
788 |
Q |
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|||||||||||| || || || || || || ||||| |||||| | || |||||||| ||||| |||||||| ||||| || |||||| |
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| T |
28136725 |
tgatgcatttggtgtgcttccacctgttagtaagctaagcttgtcacagacaatgtatcatttcatcagtggatatacagctttggta |
28136638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 601 - 778
Target Start/End: Complemental strand, 12994718 - 12994541
Alignment:
| Q |
601 |
ttgcagagagtactcgtgcagcgtatcctatagagtacatacctaatgctaggataccatgtgttgctccccatgcaaagaatgtcatccttctagcttg |
700 |
Q |
| |
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||||||| | |||||||||||| |||||||||||||||||||| ||||| | | |||||||||||| || ||| |||||||||| || ||| | || || |
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| T |
12994718 |
ttgcagaaaatactcgtgcagcctatcctatagagtacataccaaatgcaaagttaccatgtgttggacctcatccaaagaatgttattcttttggcatg |
12994619 |
T |
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| Q |
701 |
tgatgcatttggggtactccccccagtaagcaagctgagcttggcccaaacaatgtaccattttatcagtggctatac |
778 |
Q |
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|||||||||||| || || || || || || ||||| | | |||| || || ||||||||||| |||||||| ||||| |
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| T |
12994618 |
tgatgcatttggtgtgctaccacctgtgagtaagctaaccctggcgcagaccatgtaccatttcatcagtggatatac |
12994541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 601 - 778
Target Start/End: Complemental strand, 13069367 - 13069190
Alignment:
| Q |
601 |
ttgcagagagtactcgtgcagcgtatcctatagagtacatacctaatgctaggataccatgtgttgctccccatgcaaagaatgtcatccttctagcttg |
700 |
Q |
| |
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||||||| | |||||||||||| |||||||||||||||||||| ||||| | | |||||||||||| || ||| |||||||||| || ||| | || || |
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| T |
13069367 |
ttgcagaaaatactcgtgcagcctatcctatagagtacataccaaatgcaaagttaccatgtgttggacctcatccaaagaatgttattcttttggcatg |
13069268 |
T |
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| Q |
701 |
tgatgcatttggggtactccccccagtaagcaagctgagcttggcccaaacaatgtaccattttatcagtggctatac |
778 |
Q |
| |
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|||||||||||| || || || || || || ||||| | | |||| || || ||||||||||| |||||||| ||||| |
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| T |
13069267 |
tgatgcatttggtgtgctaccacctgtgagtaagctaaccctggcgcagaccatgtaccatttcatcagtggatatac |
13069190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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