View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1507-Insertion-9 (Length: 768)

Name: NF1507-Insertion-9
Description: NF1507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1507-Insertion-9
NF1507-Insertion-9
[»] chr5 (3 HSPs)
chr5 (8-768)||(40141084-40141844)
chr5 (514-553)||(28322259-28322298)
chr5 (506-553)||(15086716-15086763)
[»] chr1 (1 HSPs)
chr1 (512-553)||(3451873-3451914)
[»] chr7 (2 HSPs)
chr7 (478-553)||(46179876-46179951)
chr7 (506-553)||(10893863-10893910)
[»] chr4 (4 HSPs)
chr4 (519-553)||(2796564-2796598)
chr4 (490-560)||(13307888-13307957)
chr4 (507-551)||(20204669-20204714)
chr4 (506-543)||(50699198-50699235)
[»] chr6 (3 HSPs)
chr6 (508-548)||(24821696-24821736)
chr6 (512-551)||(4012740-4012779)
chr6 (520-553)||(32577472-32577505)
[»] chr3 (1 HSPs)
chr3 (512-553)||(49636826-49636867)
[»] chr2 (1 HSPs)
chr2 (512-553)||(35198231-35198272)


Alignment Details
Target: chr5 (Bit Score: 699; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 8 - 768
Target Start/End: Complemental strand, 40141844 - 40141084
Alignment:
Q  8 ctaattatgccagagaaccatgttttgcaagacctgcaaggaaagaatcaatggtttcaaattcagttgtccaaccaatgactaaaatgcaaggctatga 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40141844 ctaattatgccagagaaccatgttttgcaagacctgcaaggaaagaatcaatcgtttcaaattcagttgtccaaccaatgactaaaatgcaaggctatga 40141745  T
Q  108 ttttgattcacttgagccaccttcatttgctaggccaagaaaacagattagacaagaagaacagctaaataatgagaaaagaatacaccattctggaatt 207  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||    
T  40141744 ttttgattcacttgagccaccttcatttgctaggccaagcaaacagattagacaaggagagcagctaaataatgagaaaagaatacaccattctgaaatt 40141645  T
Q  208 ggtgattagcattttgcactttgaaaattaattactacaagttataatatataatatctagctaattattgttagaaatatattatttgtgtaacnnnnn 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||         
T  40141644 ggtgattagcattttgcactttgaaaattaattactacaagttataatatataataactagctaattattgttagaaatatattatttgtgtaacttttt 40141545  T
Q  308 nnnnnctttacaggaatcgagtggtcaccaagaatggatgttgcagaatcagaaagtaaatatgttatcatggtggaagttcctggtgtcagtgttaatg 407  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40141544 tttttctttacaggaatcgagtggtcaccaagaatggatgttgcagaatcagaaagtaaatatgttatcatggtggaagttcctggtgtcagtgttaatg 40141445  T
Q  408 acataagagtggaggttgatgatcaaaagtaagcagcagttttttattttcacattgacacttttgatgcaaggcttgtctagtgtctgacacgtggggg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40141444 acataagagtggaggttgatgatcaaaagtaagcagcagttttttattttcacattgacacttttgatgcaaggcttgtctagtgtctgacacgtggggg 40141345  T
Q  508 tgtccgacaccaacacatgtgattaaattcaattaattcattttctaaaaattatttctcatgtccatgttgtgtccggagtttgtctatgtgtcagtgc 607  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40141344 tgtccgacaccaacacatgtggttaaattcaattaattcattttctaaaaatgatttctcatgtccatgttgtgtccggagtttgtctatgtgtcagtgc 40141245  T
Q  608 cttgcttcgtcgctctttgcaatttacggtactattagatattagatctcgtttcattctaataaaagagtcaatatgtgaatttttgacagattgtcaa 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40141244 cttgcttcgtcgctctttgcaatttacggtactattagatattagatctcgtttcattctaataaaagagtcaatatgtgaatttttgacagattgtcaa 40141145  T
Q  708 tcaaaggtagacgctctaccggttcttggagagtagcaggttgcccaaatgcttcagtttc 768  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40141144 tcaaaggtagacgctctaccggttcttggagagtagcaggttgcccaaatgcttcagtttc 40141084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 514 - 553
Target Start/End: Complemental strand, 28322298 - 28322259
Alignment:
Q  514 acaccaacacatgtgattaaattcaattaattcattttct 553  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  28322298 acaccaacacatgtgattacattcaattaattcattttct 28322259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 553
Target Start/End: Complemental strand, 15086763 - 15086716
Alignment:
Q  506 ggtgtccgacaccaacacatgtgattaaattcaattaattcattttct 553  Q
    |||||||||||||||||||||||||||  ||||| ||||||| |||||    
T  15086763 ggtgtccgacaccaacacatgtgattacgttcaaataattcactttct 15086716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 512 - 553
Target Start/End: Complemental strand, 3451914 - 3451873
Alignment:
Q  512 cgacaccaacacatgtgattaaattcaattaattcattttct 553  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  3451914 cgacaccaacacatgtgattaaattcaattaattcgttttct 3451873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 478 - 553
Target Start/End: Original strand, 46179876 - 46179951
Alignment:
Q  478 aaggcttgtctagtgtctgacacgtgggggtgtccgacaccaacacatgtgattaaattcaattaattcattttct 553  Q
    ||||| ||||||||||  |||| ||||  || ||||||||| ||||||||||||| |||||||||||| |||||||    
T  46179876 aaggcatgtctagtgttggacatgtggttgtttccgacaccgacacatgtgattatattcaattaatttattttct 46179951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 553
Target Start/End: Original strand, 10893863 - 10893910
Alignment:
Q  506 ggtgtccgacaccaacacatgtgattaaattcaattaattcattttct 553  Q
    |||||| |||||||||||||||||||| |||||||||  |||||||||    
T  10893863 ggtgtcagacaccaacacatgtgattacattcaattatgtcattttct 10893910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 519 - 553
Target Start/End: Complemental strand, 2796598 - 2796564
Alignment:
Q  519 aacacatgtgattaaattcaattaattcattttct 553  Q
    |||||||||||||||||||||||||||||||||||    
T  2796598 aacacatgtgattaaattcaattaattcattttct 2796564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 490 - 560
Target Start/End: Complemental strand, 13307957 - 13307888
Alignment:
Q  490 gtgtctgacacgtgggggtgtccgacaccaacacatgtgattaaattcaattaattcattttctaaaaatt 560  Q
    ||||||||||||||  | |||||||||||||||| |||||||| ||| |||||  ||||||||| ||||||    
T  13307957 gtgtctgacacgtgtcg-tgtccgacaccaacacttgtgattacattgaattatgtcattttctcaaaatt 13307888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 551
Target Start/End: Original strand, 20204669 - 20204714
Alignment:
Q  507 gtgtccgacacca-acacatgtgattaaattcaattaattcatttt 551  Q
    ||||||||||||| |||||||||||||  |||||||||||||||||    
T  20204669 gtgtccgacaccatacacatgtgattacgttcaattaattcatttt 20204714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 543
Target Start/End: Complemental strand, 50699235 - 50699198
Alignment:
Q  506 ggtgtccgacaccaacacatgtgattaaattcaattaa 543  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  50699235 ggtgtccaacaccaacacatgtgattacattcaattaa 50699198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 508 - 548
Target Start/End: Complemental strand, 24821736 - 24821696
Alignment:
Q  508 tgtccgacaccaacacatgtgattaaattcaattaattcat 548  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  24821736 tgtcagacaccaacacatgtgattacattcaattaattcat 24821696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 512 - 551
Target Start/End: Complemental strand, 4012779 - 4012740
Alignment:
Q  512 cgacaccaacacatgtgattaaattcaattaattcatttt 551  Q
    |||||| |||||||||||||| ||||||||||||||||||    
T  4012779 cgacacaaacacatgtgattatattcaattaattcatttt 4012740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 553
Target Start/End: Original strand, 32577472 - 32577505
Alignment:
Q  520 acacatgtgattaaattcaattaattcattttct 553  Q
    ||||||||||||| ||||||||||||||||||||    
T  32577472 acacatgtgattacattcaattaattcattttct 32577505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 553
Target Start/End: Original strand, 49636826 - 49636867
Alignment:
Q  512 cgacaccaacacatgtgattaaattcaattaattcattttct 553  Q
    |||||||| | |||||||||| ||||||||||||||||||||    
T  49636826 cgacaccagcgcatgtgattacattcaattaattcattttct 49636867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 553
Target Start/End: Original strand, 35198231 - 35198272
Alignment:
Q  512 cgacaccaacacatgtgattaaattcaattaattcattttct 553  Q
    |||||||  |||||||||||| ||||||||||||||||||||    
T  35198231 cgacaccgtcacatgtgattacattcaattaattcattttct 35198272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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