View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15070_low_1 (Length: 362)
Name: NF15070_low_1
Description: NF15070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15070_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 24637343 - 24637546
Alignment:
| Q |
1 |
gaaccttgcataacattaaaatgaacaagggatacataaaacatataggcacaacaagattttaaggaatccaaaagtaagttaaaacagaaacacgagc |
100 |
Q |
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| T |
24637343 |
gaaccttgcataacattaaaatgaacaagggatacataaaacatataggcacaacaagattttaaggaatccaaaagtaatttaaaacagaaacacgagc |
24637442 |
T |
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| Q |
101 |
agcatctatgaaaacgtgcagaagttagtggggagctataaattatgtttcagatgcctttcaatcatcaccattataagaaataacagcttgattcctc |
200 |
Q |
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| T |
24637443 |
agcatctatgaaaacgtgcagaagttagtggggagctataaattatgtttcagatgcctttcaatcatcaccattataagaaataacagcttgattcctc |
24637542 |
T |
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| Q |
201 |
cgac |
204 |
Q |
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|||| |
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| T |
24637543 |
cgac |
24637546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 245 - 348
Target Start/End: Original strand, 24637587 - 24637690
Alignment:
| Q |
245 |
cttcaactaatgcacaaatgttatgtgaaatatcataccccaaatagatgttcttacaaacatcaaaacatgttttggagaaaacttatttgatgtcaat |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24637587 |
cttcaactaatgcacaaatgttatgtgaaatatcataccccaaatagatgttcttacaaacatcagaacatgttttggagaaaacttatttgatgtcaat |
24637686 |
T |
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| Q |
345 |
attg |
348 |
Q |
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|||| |
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| T |
24637687 |
attg |
24637690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 245 - 348
Target Start/End: Original strand, 24716218 - 24716321
Alignment:
| Q |
245 |
cttcaactaatgcacaaatgttatgtgaaatatcataccccaaatagatgttcttacaaacatcaaaacatgttttggagaaaacttatttgatgtcaat |
344 |
Q |
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|||| ||| |||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||| |||||||| |||||||| ||||||||| ||||| |
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| T |
24716218 |
cttctactcatgcacaaattttatgtgaaatatcacacccgaaatagatgtttttacaaacatcagaacatgttctggagaaagtttatttgatatcaat |
24716317 |
T |
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| Q |
345 |
attg |
348 |
Q |
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|||| |
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| T |
24716318 |
attg |
24716321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 24715918 - 24716010
Alignment:
| Q |
1 |
gaaccttgcataacattaaaatgaacaagggatacataaaacatataggcacaacaagattttaaggaatccaaaagtaagttaaaacagaaa |
93 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||| |||||| ||| |||||||||||| |
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| T |
24715918 |
gaaccatgcataacattaaaatgagcaagggatacataaaacaaataggcaccgcaattttttaaggaacccaaaactaatttaaaacagaaa |
24716010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 24716115 - 24716171
Alignment:
| Q |
140 |
aaattatgtttcagatgcctttcaatcatcaccattataagaaataacagcttgattcctcc |
201 |
Q |
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|||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||| |
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| T |
24716115 |
aaattatgtttcagattcctttcaatcat-----ttataggaaataacagattgattcctcc |
24716171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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