View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15070_low_2 (Length: 362)

Name: NF15070_low_2
Description: NF15070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15070_low_2
NF15070_low_2
[»] chr5 (26 HSPs)
chr5 (20-228)||(37430130-37430338)
chr5 (230-360)||(37429778-37429908)
chr5 (24-208)||(37704061-37704245)
chr5 (71-228)||(37437074-37437231)
chr5 (71-228)||(37595703-37595860)
chr5 (71-228)||(37712997-37713154)
chr5 (71-228)||(37825268-37825425)
chr5 (75-228)||(37641251-37641404)
chr5 (72-228)||(37534479-37534635)
chr5 (71-208)||(37399451-37399588)
chr5 (233-359)||(37399812-37399938)
chr5 (71-208)||(37380959-37381096)
chr5 (233-359)||(37391961-37392087)
chr5 (241-359)||(37595358-37595476)
chr5 (241-359)||(37640906-37641024)
chr5 (38-208)||(37698186-37698356)
chr5 (71-208)||(37411939-37412076)
chr5 (235-360)||(37412316-37412441)
chr5 (238-359)||(37703702-37703823)
chr5 (231-359)||(37712658-37712786)
chr5 (71-204)||(37391585-37391718)
chr5 (241-359)||(37534134-37534252)
chr5 (231-344)||(37436756-37436869)
chr5 (231-282)||(37381333-37381384)
chr5 (241-359)||(37697821-37697939)
chr5 (241-359)||(37824929-37825047)
[»] chr3 (2 HSPs)
chr3 (71-208)||(14554425-14554562)
chr3 (231-359)||(14554072-14554200)
[»] chr4 (4 HSPs)
chr4 (20-204)||(24216316-24216500)
chr4 (235-327)||(24216748-24216840)
chr4 (71-208)||(16841500-16841637)
chr4 (235-359)||(16841878-16842002)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 37430338 - 37430130
Alignment:
Q  20 aagaactcattttttatcaacacttaatctcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaactggcacagatt 119  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37430338 aagaattcattttttatcaacacttcatctcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaaccggcacagatt 37430239  T
Q  120 gctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattggtttggaccttagttgcaacaatctgaacggtgaattaacgaccaatag 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||    
T  37430238 gctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattggtctggaccttagttgcaacaatctgaacggtgaattagcggccaatag 37430139  T
Q  220 caccatctt 228  Q
    |||||||||    
T  37430138 caccatctt 37430130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 230 - 360
Target Start/End: Complemental strand, 37429908 - 37429778
Alignment:
Q  230 gtccattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtc 329  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37429908 gtccactcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatctttaatcagagagagatctttgtc 37429809  T
Q  330 gctgctaaggaatttatcgtcctctgtggtc 360  Q
    ||||||||||||||||||||||||| |||||    
T  37429808 gctgctaaggaatttatcgtcctctttggtc 37429778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 37704245 - 37704061
Alignment:
Q  24 actcattttttatcaacacttaatctcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctg 123  Q
    ||||||||| | ||||||||| |||| |||| ||||||  ||||   ||||  ||||||||||| |||||||||||||||||||| ||||||||||| ||    
T  37704245 actcattttctgtcaacacttcatctaaacccggttttctgtctatgtgtttgtctttttcttttaagacagaatcttggaaaaccggcacagattgttg 37704146  T
Q  124 cgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattggtttggaccttagttgcaacaatctgaacggtgaatta 208  Q
    |||||||||||||||||||||||||| | |||  ||| | |||||||||||||| || ||||||||||||||||| |||||||||    
T  37704145 cgagtgggatggtgtcacgtgcgacaccgtgtctgatcacgtgattggtttggatctcagttgcaacaatctgaaaggtgaatta 37704061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 71 - 228
Target Start/End: Complemental strand, 37437231 - 37437074
Alignment:
Q  71 tgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattg 170  Q
    |||| |||||||||||||||||||||||||||| |||   | |||||||| || ||||||||||||||||||||||||| |||||  ||| | |||||||    
T  37437231 tgtttctctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattg 37437132  T
Q  171 gtttggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt 228  Q
    || ||||||| ||||||||||||||||| |||||||||    ||||||||||||||||    
T  37437131 gtctggacctcagttgcaacaatctgaaaggtgaattacatcccaatagcaccatctt 37437074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 71 - 228
Target Start/End: Complemental strand, 37595860 - 37595703
Alignment:
Q  71 tgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattg 170  Q
    ||||||||||||||||||||||||||||||||| |||   | |||||||| || ||||||||||||||||||||||||| |||||  ||| | |||||||    
T  37595860 tgttcctctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattg 37595761  T
Q  171 gtttggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt 228  Q
    || ||||||| |||||||||||||| || |||||||||    ||||||||||||||||    
T  37595760 gtctggacctcagttgcaacaatcttaaaggtgaattacatcccaatagcaccatctt 37595703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 71 - 228
Target Start/End: Complemental strand, 37713154 - 37712997
Alignment:
Q  71 tgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattg 170  Q
    ||||||||||||||||||||||||||||||||| |||   | |||||||| || ||||||||||||||||||||||||| |||||  ||| | |||||||    
T  37713154 tgttcctctttttctttcaagacagaatcttggcaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattg 37713055  T
Q  171 gtttggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt 228  Q
    || ||||||| |||||||||||||| || |||||||||    ||||||||||||||||    
T  37713054 gtctggacctcagttgcaacaatctaaaaggtgaattacatcccaatagcaccatctt 37712997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 71 - 228
Target Start/End: Complemental strand, 37825425 - 37825268
Alignment:
Q  71 tgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattg 170  Q
    ||||||||||||||||||||||||||||||||| |||   | |||||||| || ||||||||||||||||||||||||| |||||  ||| | |||||||    
T  37825425 tgttcctctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattg 37825326  T
Q  171 gtttggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt 228  Q
    || ||||||| |||||||||||||| || |||||||||    ||||||||||||||||    
T  37825325 gtctggacctcagttgcaacaatctaaaaggtgaattacatcccaatagcaccatctt 37825268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 37641404 - 37641251
Alignment:
Q  75 cctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattggttt 174  Q
    |||||||||||||||||||||||||||||||||     |||||||| || ||||||||||||||||||||||||| |||||  ||| | ||||||||| |    
T  37641404 cctctttttctttcaagacagaatcttggaaaaacaatacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattggtct 37641305  T
Q  175 ggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt 228  Q
    |||||| |||||||||||||| || |||||||||    ||||||||||||||||    
T  37641304 ggacctcagttgcaacaatctaaaaggtgaattacatcccaatagcaccatctt 37641251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 72 - 228
Target Start/End: Complemental strand, 37534635 - 37534479
Alignment:
Q  72 gttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattgg 171  Q
    |||| ||||||||||||||||||||||||||| |||   | |||||||| || ||||||||||||||||||||||||| |||||  ||| | ||||||||    
T  37534635 gttcttctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattgg 37534536  T
Q  172 tttggaccttagttgcaacaatctgaacggtgaattaacgaccaatagcaccatctt 228  Q
    | ||||||| |||||||||||||| || |||||||||    ||||||||||||||||    
T  37534535 tctggacctcagttgcaacaatctaaaaggtgaattacatcccaatagcaccatctt 37534479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 37399451 - 37399588
Alignment:
Q  71 tgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattg 170  Q
    ||||||||||||||||||||||||||||||||| |||   | |||||||| || ||||||||||||||||||||||||| |||||  ||| | |||||||    
T  37399451 tgttcctctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattg 37399550  T
Q  171 gtttggaccttagttgcaacaatctgaacggtgaatta 208  Q
    || ||||||| ||||||||||| || || |||||||||    
T  37399551 gtctggacctcagttgcaacaaactaaaaggtgaatta 37399588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 233 - 359
Target Start/End: Original strand, 37399812 - 37399938
Alignment:
Q  233 cattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgct 332  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | || |||||  |||||||||| ||||||||  |    
T  37399812 cattgacatggaagaaactcattcataatgctactaatttaagggagcttcatttgaatattgtgaacatgtcttccctcagagagagctctttgtcaat 37399911  T
Q  333 gctaaggaatttatcgtcctctgtggt 359  Q
    ||||| |||||| || |||||| ||||    
T  37399912 gctaaagaatttgtcatcctctttggt 37399938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 37380959 - 37381096
Alignment:
Q  71 tgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattg 170  Q
    |||||| ||||||||||||||| |||||||||||||| |   |||||||| || | ||||||||||||||||||||||  |||||  ||| |||||||||    
T  37380959 tgttccactttttctttcaagatagaatcttggaaaaataatacagattgttgtgggtgggatggtgtcacgtgcgactccatgtcagatcatgtgattg 37381058  T
Q  171 gtttggaccttagttgcaacaatctgaacggtgaatta 208  Q
    || ||||||| ||||||| ||||||||| |||||||||    
T  37381059 gtctggacctcagttgcagcaatctgaatggtgaatta 37381096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 233 - 359
Target Start/End: Original strand, 37391961 - 37392087
Alignment:
Q  233 cattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgct 332  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||| | ||| || |||||||| ||||||||  |    
T  37391961 cattgacatggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagagtggatatgtattccattagagagagctctttgtctat 37392060  T
Q  333 gctaaggaatttatcgtcctctgtggt 359  Q
    ||||| |||| | || |||||| ||||    
T  37392061 gctaaagaatgtgtcatcctctttggt 37392087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 241 - 359
Target Start/End: Complemental strand, 37595476 - 37595358
Alignment:
Q  241 tggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgctaagga 340  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |  ||||| ||||||||  |||||| ||    
T  37595476 tggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttccattacggagagctctttgtccatgctaaaga 37595377  T
Q  341 atttatcgtcctctgtggt 359  Q
    |||| || |||||| ||||    
T  37595376 atttttcatcctctttggt 37595358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 241 - 359
Target Start/End: Complemental strand, 37641024 - 37640906
Alignment:
Q  241 tggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgctaagga 340  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |  ||||| ||||||||  |||||| ||    
T  37641024 tggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttccattacggagagctctttgtcaatgctaaaga 37640925  T
Q  341 atttatcgtcctctgtggt 359  Q
    |||| || |||||| ||||    
T  37640924 atttgtcatcctctttggt 37640906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 38 - 208
Target Start/End: Complemental strand, 37698356 - 37698186
Alignment:
Q  38 aacacttaatctcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtg 137  Q
    |||||||  |||||||||| | ||||||||   |||||||||||||||| || |||||||||||||||||     |||||||| ||| ||||||||||||    
T  37698356 aacacttcgtctcaacctgatatttggtctagatgttcctctttttcttccaggacagaatcttggaaaaacaatacagattgttgcaagtgggatggtg 37698257  T
Q  138 tcacgtgcgacatcatgtacgattatgtgattggtttggaccttagttgcaacaatctgaacggtgaatta 208  Q
    ||||||| ||||    ||  ||||| ||||||||||||||||| |||||||||||| |||| |||||||||    
T  37698256 tcacgtgtgacactgagtcggattacgtgattggtttggacctcagttgcaacaatttgaaaggtgaatta 37698186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 37411939 - 37412076
Alignment:
Q  71 tgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattg 170  Q
    ||||||||||||||||| || ||||| |||||||||| |   |||||||| ||||||||| ||||||||| |||||||| | | |  ||| |||||||||    
T  37411939 tgttcctctttttctttgaaaacagattcttggaaaaataatacagattgttgcgagtggtatggtgtcatgtgcgacaccgttttggatcatgtgattg 37412038  T
Q  171 gtttggaccttagttgcaacaatctgaacggtgaatta 208  Q
    ||||||||||||| ||||||||||| || |||||||||    
T  37412039 gtttggaccttaggtgcaacaatcttaaaggtgaatta 37412076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 235 - 360
Target Start/End: Original strand, 37412316 - 37412441
Alignment:
Q  235 ttcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgc 334  Q
    |||||||||||| ||||||||| ||||| ||| |||||||| ||||||||| |||||| ||| ||||| ||||| ||||||||||  |||||||||||||    
T  37412316 ttcacatggaaggaactcattcataatgttacaaatttaagcgagcttcatctgaatagtgttgatatgtcttccatcagagagaattctttgtcgctgc 37412415  T
Q  335 taaggaatttatcgtcctctgtggtc 360  Q
    ||| |||||| || |||||| |||||    
T  37412416 taaagaatttgtcatcctctctggtc 37412441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 238 - 359
Target Start/End: Complemental strand, 37703823 - 37703702
Alignment:
Q  238 acatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgctaa 337  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |  ||||| || |||||  ||||||    
T  37703823 acatggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttccattacggagagctcattgtcaatgctaa 37703724  T
Q  338 ggaatttatcgtcctctgtggt 359  Q
     |||||| || |||||| ||||    
T  37703723 agaatttgtcatcctctttggt 37703702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 231 - 359
Target Start/End: Complemental strand, 37712786 - 37712658
Alignment:
Q  231 tccattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcg 330  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||| ||| ||||| ||| |||| | || ||||| ||||||||||| ||||||||     
T  37712786 tccattgacatggaagaaactcattcataatgctactaatttaagggaactttatttggataatgtgaacatgtcttccatcagagagagctctttgtca 37712687  T
Q  331 ctgctaaggaatttatcgtcctctgtggt 359  Q
     |||||| |||||| || |||||| ||||    
T  37712686 atgctaaagaatttgtcatcctctttggt 37712658  T

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Target: chr5; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 204
Target Start/End: Original strand, 37391585 - 37391718
Alignment:
Q  71 tgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattg 170  Q
    |||||||||||||||||||||||||||||||||||||   | ||| |||| ||| |||||||||||||||||||||||| |||||  ||| | |||||||    
T  37391585 tgttcctctttttctttcaagacagaatcttggaaaaacagtacaaattgttgcaagtgggatggtgtcacgtgcgacaccatgtcagatcacgtgattg 37391684  T
Q  171 gtttggaccttagttgcaacaatctgaacggtga 204  Q
       | ||||| |||||||||||| |||| |||||    
T  37391685 aactagacctcagttgcaacaatttgaatggtga 37391718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 241 - 359
Target Start/End: Complemental strand, 37534252 - 37534134
Alignment:
Q  241 tggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgctaagga 340  Q
    |||||||||||||||| ||||||||||||||||||||| ||| ||||| ||| |||| | || ||||| ||||||||||| ||||||||  |||||| ||    
T  37534252 tggaagaaactcattcataatgctactaatttaagggaactttatttggataatgtgaacatgtcttccatcagagagagctctttgtcaatgctaaaga 37534153  T
Q  341 atttatcgtcctctgtggt 359  Q
    |||| || |||||| ||||    
T  37534152 atttgtcatcctctttggt 37534134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 344
Target Start/End: Complemental strand, 37436869 - 37436756
Alignment:
Q  231 tccattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcg 330  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||   ||| | || ||||||||  ||||||| |||||||||    
T  37436869 tccattcgcatggaagaaactcattcataatgctactaatttaagggagcttcatctgaatggagtgaaaatgtcttcaattggagagagctctttgtcg 37436770  T
Q  331 ctgctaaggaattt 344  Q
     || ||| ||||||    
T  37436769 ttgttaacgaattt 37436756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 37381333 - 37381384
Alignment:
Q  231 tccattcacatggaagaaactcattcttaatgctactaatttaagggagctt 282  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  37381333 tccattgacatggaagaaactcattcataatgctactaatttaagggagctt 37381384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 359
Target Start/End: Complemental strand, 37697939 - 37697821
Alignment:
Q  241 tggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgctaagga 340  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| | |||   ||| | || ||||||||| ||||||| || |||||  |||||| ||    
T  37697939 tggaagaaactcattcataatgctactaatttaagggatcttcatcttaatggagtgaacatgtcttcaatcggagagagctcattgtcaatgctaaaga 37697840  T
Q  341 atttatcgtcctctgtggt 359  Q
    |||| || |||||| ||||    
T  37697839 atttgtcatcctctttggt 37697821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 359
Target Start/End: Complemental strand, 37825047 - 37824929
Alignment:
Q  241 tggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgctaagga 340  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| | |||   ||| | || ||||||||| ||||||| || |||||  |||||| ||    
T  37825047 tggaagaaactcattcataatgctactaatttaagggatcttcatcttaatggagtgaacatgtcttcaatcggagagagctcattgtcaatgctaaaga 37824948  T
Q  341 atttatcgtcctctgtggt 359  Q
    |||| || |||||| ||||    
T  37824947 atttgtcatcctctttggt 37824929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 71 - 208
Target Start/End: Complemental strand, 14554562 - 14554425
Alignment:
Q  71 tgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattg 170  Q
    |||| ||||||||||||||||||||||||||||||||   | |||||||| |||||||||||||||||||||||||||| ||| |  | | | |||||||    
T  14554562 tgtttctctttttctttcaagacagaatcttggaaaaagagtacagattgttgcgagtgggatggtgtcacgtgcgacaccatatcaggtcacgtgattg 14554463  T
Q  171 gtttggaccttagttgcaacaatctgaacggtgaatta 208  Q
       | |||||||||||||||||| |||| |||||||||    
T  14554462 aactagaccttagttgcaacaatttgaatggtgaatta 14554425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 359
Target Start/End: Complemental strand, 14554200 - 14554072
Alignment:
Q  231 tccattcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcg 330  Q
    |||||| |||||||| |||||||||| ||||||||||||||||||||| ||| || |||||   ||| | || ||||| ||||||||||| ||||||||     
T  14554200 tccatttacatggaataaactcattcataatgctactaatttaagggatctttatctgaatggagtgaacatgtcttccatcagagagagctctttgtca 14554101  T
Q  331 ctgctaaggaatttatcgtcctctgtggt 359  Q
     |||||| |||||| || |||||| ||||    
T  14554100 atgctaaagaatttgtcatcctctttggt 14554072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 24216316 - 24216500
Alignment:
Q  20 aagaactcattttttatcaacacttaatctcaacctggtttttggtctcactgttcctctttttctttcaagacagaatcttggaaaactggcacagatt 119  Q
    |||||||||||| || ||||||||| |||| |||| | | ||||||||   |||||| |||||| ||||| ||| ||||| ||||||| |||  ||||||    
T  24216316 aagaactcatttgttgtcaacacttcatctgaacccgatatttggtctatgtgttccactttttatttcaggacggaatcctggaaaaatggtgcagatt 24216415  T
Q  120 gctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattggtttggaccttagttgcaacaatctgaacggtga 204  Q
    | |||||||||||||| |||| ||| ||||  | ||   |||| ||||||||| ||||||||||||||||||||||||| |||||    
T  24216416 gttgcgagtgggatggggtcatgtgtgacactaggtcaaattacgtgattggtctggaccttagttgcaacaatctgaaaggtga 24216500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 327
Target Start/End: Original strand, 24216748 - 24216840
Alignment:
Q  235 ttcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttg 327  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |  |||||   ||||| |||||||||||||||||||| ||||||    
T  24216748 ttcacatggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacatatcttcaatcagagagagctctttg 24216840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 16841500 - 16841637
Alignment:
Q  71 tgttcctctttttctttcaagacagaatcttggaaaactggcacagattgctgcgagtgggatggtgtcacgtgcgacatcatgtacgattatgtgattg 170  Q
    |||||||||  ||||||||||||| ||||||||||||  || || ||||| ||| ||||||||||||||||||| ||||     |  ||||| ||| |||    
T  16841500 tgttcctctacttctttcaagacaaaatcttggaaaaacggtacggattgttgcaagtgggatggtgtcacgtgtgacactgaatcagattacgtggttg 16841599  T
Q  171 gtttggaccttagttgcaacaatctgaacggtgaatta 208  Q
    |||||||||| |||||||||||| |||| |||||||||    
T  16841600 gtttggacctcagttgcaacaatttgaaaggtgaatta 16841637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 359
Target Start/End: Original strand, 16841878 - 16842002
Alignment:
Q  235 ttcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatcttcaatcagagagagatctttgtcgctgc 334  Q
    ||||| |||||||||||||||| |||||||||||| |||||||| ||| || | |||   ||| | || ||||||||  ||||||| ||||||||  |||    
T  16841878 ttcacttggaagaaactcattcataatgctactaaattaagggatctttatctaaatggagtgaacatgtcttcaattggagagagctctttgtcaatgc 16841977  T
Q  335 taaggaatttatcgtcctctgtggt 359  Q
    |||  ||||| || |||||| ||||    
T  16841978 taaacaatttgtcatcctctttggt 16842002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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