View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15070_low_5 (Length: 231)

Name: NF15070_low_5
Description: NF15070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15070_low_5
NF15070_low_5
[»] chr7 (2 HSPs)
chr7 (21-202)||(39227807-39227989)
chr7 (13-73)||(39200211-39200272)
[»] chr2 (2 HSPs)
chr2 (122-167)||(29966670-29966715)
chr2 (74-169)||(21538913-21539008)
[»] chr8 (1 HSPs)
chr8 (125-170)||(18535162-18535207)
[»] chr4 (1 HSPs)
chr4 (122-175)||(17651444-17651497)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 39227807 - 39227989
Alignment:
Q  21 aacaaatcattcaataagaaacaaaagatttatcaaagtgttgt-cactgacaatatctaattgaggaaaagttttcaaaatctgatcaagctctataag 119  Q
    |||| ||||||  |||||||||||||||||||||||||| |||| ||| |||| |||| ||||| || ||||||||||||||||||||||||| | ||||    
T  39227807 aacatatcattatataagaaacaaaagatttatcaaagtattgttcaccgacattatccaattgtggcaaagttttcaaaatctgatcaagctttgtaag 39227906  T
Q  120 acgattttgatgagttggcaaacttcaaacaacaactctattatttctctcatatataaagacatgagtaatttcaagaaaga 202  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||  | |||| ||| ||||||||    
T  39227907 acgattttcatgagttggcaaacttaaaacaacaactctattatttctctcatgtataaagaactaagtagtttgaagaaaga 39227989  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 39200211 - 39200272
Alignment:
Q  13 caaaggcaaacaaatcattcaataagaaacaaaagatttatcaaagtgttg-tcactgacaa 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39200211 caaaggcaaacaaatcattcaataagaaacaaaagatttatcaaagtgttgttcactgacaa 39200272  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 29966670 - 29966715
Alignment:
Q  122 gattttgatgagttggcaaacttcaaacaacaactctattatttct 167  Q
    |||||||||||||||| ||  |||||||||||||||||||||||||    
T  29966670 gattttgatgagttggaaatattcaaacaacaactctattatttct 29966715  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 21538913 - 21539008
Alignment:
Q  74 tatctaattgaggaaaagttttcaaaatctgatcaagc-tctataagacgattttgatgagttggcaaacttcaaacaacaactctattatttctct 169  Q
    |||| |||||||| |||||||||||||| ||||||||| |||  |  |||| ||||||| |||||||| |||| ||||||   ||||||||||||||    
T  21538913 tatccaattgaggcaaagttttcaaaatatgatcaagcttctcaagaacgaatttgatgtgttggcaatcttc-aacaacggttctattatttctct 21539008  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 18535207 - 18535162
Alignment:
Q  125 tttgatgagttggcaaacttcaaacaacaactctattatttctctc 170  Q
    ||||||||| |||||| | |||||| ||||||||||||||||||||    
T  18535207 tttgatgagatggcaatcatcaaactacaactctattatttctctc 18535162  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 17651444 - 17651497
Alignment:
Q  122 gattttgatgagttggcaaacttcaaacaacaactctattatttctctcatata 175  Q
    ||||||||||||||||| | | ||||||||| |||||| |||||||||| ||||    
T  17651444 gattttgatgagttggccagcatcaaacaacgactctaatatttctctcctata 17651497  T

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