View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15071_high_4 (Length: 293)
Name: NF15071_high_4
Description: NF15071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15071_high_4 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 293
Target Start/End: Complemental strand, 14039539 - 14039253
Alignment:
| Q |
7 |
gaaactgcatgacaacaggttgcatggtggatttgaacgcggcatgtccaaccgagttgaaagtgatgagtaatggcggaggtgtagcgtgtaaaagcgc |
106 |
Q |
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| T |
14039539 |
gaaactgcatgacaacaggttgcatggtggatttgaacgcggcatgtccaaccgagttgaaagtgatgagtaatggcggaggtgtagcgtgtaaaagcgc |
14039440 |
T |
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| Q |
107 |
gtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcacagtttttcaagagtgct |
206 |
Q |
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| T |
14039439 |
gtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcacagtttttcaagagtgct |
14039340 |
T |
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| Q |
207 |
tgtcctcgcgcttatagctacgcttatgatgatggaacaagcacttttacttgtgattctgctgattatactatcactttttgtccc |
293 |
Q |
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| T |
14039339 |
tgtcctcgcgcttatagctacgcttatgatgatgaaacaagcacttttacttgtgattctgctgattatactatcactttttgtccc |
14039253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 293
Target Start/End: Complemental strand, 18954510 - 18954224
Alignment:
| Q |
7 |
gaaactgcatgacaacaggttgcatggtggatttgaacgcggcatgtccaaccgagttgaaagtgatgagtaatggcggaggtgtagcgtgtaaaagcgc |
106 |
Q |
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| T |
18954510 |
gaaactgcatgacaacaggttgcatggtggatttgaacacggcgtgtccaaccgagttgaaagtgatgagtaacggaagcagtgtagcgtgtaaaagcgc |
18954411 |
T |
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| Q |
107 |
gtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcacagtttttcaagagtgct |
206 |
Q |
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| T |
18954410 |
gtgtgaagcgtttggagatctgcaatattgttgtaatggcgcttacgctactccagatacatgcaagccaagttcgtactcacaattctttaagagtgca |
18954311 |
T |
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| Q |
207 |
tgtcctcgcgcttatagctacgcttatgatgatggaacaagcacttttacttgtgattctgctgattatactatcactttttgtccc |
293 |
Q |
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| T |
18954310 |
tgtccacgtgcttatagttatgcttatgatgatggaacaagcactttcgcttgtgcttctgcagattataccatcactttttgtccc |
18954224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 260
Target Start/End: Complemental strand, 31945163 - 31944999
Alignment:
| Q |
96 |
tgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcacagtttt |
195 |
Q |
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| T |
31945163 |
tgtaaaagcgcgtgcgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccgcagacttgtaagccaagttcatactcgcagttct |
31945064 |
T |
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| Q |
196 |
tcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatggaacaagcacttttacttgt |
260 |
Q |
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| T |
31945063 |
tcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatggaactagcaccttcacttgt |
31944999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 93 - 289
Target Start/End: Original strand, 8798177 - 8798373
Alignment:
| Q |
93 |
gcgtgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcacagt |
192 |
Q |
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| T |
8798177 |
gcgtgtaaaagcgcgtgtgaagcgtttggggatccgcaatattgctgcagtggcgcttatggttccccggatacgtgtaaaccaagttcctactcgcagt |
8798276 |
T |
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| Q |
193 |
ttttcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatggaacaagcacttttacttgtgattctgctgattatactatcactttttg |
289 |
Q |
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| T |
8798277 |
tttttaagagtgcgtgtccacgcgcttatagttacgcttatgatgatggaactagcactttcacttgtgcttctgctgattataccatcactttttg |
8798373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 8810846 - 8810923
Alignment:
| Q |
216 |
gcttatagctacgcttatgatgatggaacaagcacttttacttgtgattctgctgattatactatcactttttgtccc |
293 |
Q |
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| T |
8810846 |
gcttatagttacgcttatgatgataaaactagcacttttacttgttctggtgctgattatacaatcacattttgtccc |
8810923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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