View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15071_low_1 (Length: 632)
Name: NF15071_low_1
Description: NF15071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15071_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 312 - 613
Target Start/End: Original strand, 7722448 - 7722749
Alignment:
| Q |
312 |
ctagttgtttaggaaatttttacaaattggtttctaaatcgatcactaattcattaagcgaaaaatttagacaccaatgtaggttgaaatatcgattgct |
411 |
Q |
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| T |
7722448 |
ctagttgtttaggaaatttttacaaattggtttctaaatcgatcactaattcattaagcgacaaatttagacaccaatgtaggttgaaaaattgattgct |
7722547 |
T |
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| Q |
412 |
taatcggtcataaagacaacannnnnnnnaagttaaaattaccttaattttcttacttgtgtatattgtaaacattttcaggtttgtatgttctttgatc |
511 |
Q |
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| T |
7722548 |
taatcggtcataaagacaacattttttttaagttaaaattaccttaattttcttacttgtgtatattgtaaacattttcaggtttgtatgttctttgatc |
7722647 |
T |
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| Q |
512 |
ttcttttcatgtgtcaacattatgtgttgtatccatcaaagaaaacatcatcaatttctccttctaaactcaatgacaagatcaaagagcccctcatcaa |
611 |
Q |
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| T |
7722648 |
ttcttttcatgtgtcaacattatgtgttgtatccatcaaagaaaacatcatcaatttctccttctaaactcaatgacaagatcaaagagcccctcatcaa |
7722747 |
T |
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| Q |
612 |
gt |
613 |
Q |
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|| |
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| T |
7722748 |
gt |
7722749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 7721692 - 7721993
Alignment:
| Q |
12 |
gagcacagatggatttagcattggaaatgtgttccttgatttctgtggaggaatggcaaattatgctcagatggttatacaatcaattgatcaaagtatg |
111 |
Q |
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| T |
7721692 |
gagcacagatggatttagcattggaaatgtgttccttgatttctgtggaggaatggcaaattatgctcagatggttatacaatcaattgatcaaagtatg |
7721791 |
T |
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| Q |
112 |
tctttatttccaaattcacattatagtaacattccaaatgacttgatgcatcaatgcatgtaat-taataacatttcttctcnnnnnnncattctagact |
210 |
Q |
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| T |
7721792 |
tctttatttccaaattcacattatattaacattccacatgacttaatgcatcaatgcatgtaatataataacatttcttctc-ttttttcattctagact |
7721890 |
T |
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| Q |
211 |
cttgggtgaatttctctgggaaccttggaaaagtattgttatctctggtaagaattggtccctttactctttcattcatttcaattttgatgagttgata |
310 |
Q |
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| T |
7721891 |
cttgggtgaatttctctgggaaccttggaaaagtattgttatctctggtaagaattggtccctttactctttcattcatttcaattttgatgagttgata |
7721990 |
T |
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| Q |
311 |
tct |
313 |
Q |
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||| |
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| T |
7721991 |
tct |
7721993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 7738096 - 7738147
Alignment:
| Q |
2 |
tcttgaggaggagcacagatggatttagcattggaaatgtgttccttgattt |
53 |
Q |
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||||||| | |||||||||||||||||||||||| ||||| |||||||||| |
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| T |
7738096 |
tcttgagaaagagcacagatggatttagcattggcaatgttctccttgattt |
7738147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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