View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15071_low_2 (Length: 556)
Name: NF15071_low_2
Description: NF15071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15071_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 13 - 538
Target Start/End: Original strand, 4823359 - 4823884
Alignment:
| Q |
13 |
atactatgtaccatatagacttagattcaactaagttttaagtttttggtgcacttaagtgcttgcttttaaatgaaatagggtttctggacaaactata |
112 |
Q |
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| T |
4823359 |
atactatgtaccatatagacttagattcaactaagttttaagtttttggtgcacttaagtgcttgcttttaaatgaaataggttttctggacaaactata |
4823458 |
T |
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| Q |
113 |
tgttggtccgagtagtaagggactcgagtagtttaagctagtgatcaaaagtttgattttgaaatcacgtataggaagaaaatccggctgggaggtgaga |
212 |
Q |
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| T |
4823459 |
tgttggtccgagtagtaagggactcgagtagtttaagctagtgatcaaaagtttgattttgaaatcacgtataggaagaaaatccggctgggaggtgaga |
4823558 |
T |
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| Q |
213 |
ataaaacccacattgtgtgtcaaatatgttctcaaacaaggattagtcattgttaaactgtgttagaaagtgcagtgtgcaataaaattgatttgaagct |
312 |
Q |
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| T |
4823559 |
ataaaacccacattgtgtgtcaaatatgttctcaaacaaggattagtcattgttaaactgtgttagaaagtgcagtgtgcaataaaattgatttgaagct |
4823658 |
T |
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| Q |
313 |
ttactagcatatatctttttcatttgtatatgtgattcaccccaatttacaatataaaagcattattagcatatagaaaaagtttattattatgacaatg |
412 |
Q |
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| T |
4823659 |
ttactagcatatatctttttcatttgtatatgtgattcaccccaatttacaatataaaagcattattagcatatagaaaaagtttattattatgacaatg |
4823758 |
T |
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| Q |
413 |
aagcaaaatattgattggtgagtgactattcaggtcaatgacagcaacttcaaagctgtataatggaggctacagaaatcttggatggttagttggaggc |
512 |
Q |
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| T |
4823759 |
aagcaaaatattgattggtgagtgactattcaggtcaatgacagcaacttcaaagctgtataatggaggttacagaaatcttggatggttagttggaggc |
4823858 |
T |
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| Q |
513 |
tttagtcgttcaaaagacgatgattt |
538 |
Q |
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| T |
4823859 |
tttagtcgttcaaaagacgatgattt |
4823884 |
T |
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