View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15071_low_3 (Length: 507)
Name: NF15071_low_3
Description: NF15071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15071_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 393
Target Start/End: Complemental strand, 32940316 - 32939931
Alignment:
| Q |
13 |
ttctctatatattggatagttgataactatgtatgtatgatatttcttatgtaccaaatgataggcaactaggagatggcgcaacgtttgaaggtataaa |
112 |
Q |
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| T |
32940316 |
ttctctatatattggatagttgataactatgtatgtatgatatttcttatgtaccaaatgataggcaactaggagatggcgcaacgtttgaaggtataaa |
32940217 |
T |
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| Q |
113 |
gaaagctggtcaccttgttcacttggagcgaccatgtgtctacaatagatgtctcaagaagtttattgcttccttcttggcgtcaaatgaagcttaatga |
212 |
Q |
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| T |
32940216 |
gaaagctggtcaccttgttcacttggagcgaccatgtgtctacaatagatgtctcaagaagtttattgcttccttcttggcgtcaaatgaagcttaatga |
32940117 |
T |
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| Q |
213 |
attaaaatggagttgattaattgtaaaattaactgtatgttttaagtttctttggtttagttcccttcacataagtcaatcaagacattataaaagtggg |
312 |
Q |
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| T |
32940116 |
attaaaatggagttgattaattgtaaaattaactgtatattttaattttctttggtttagttcccttcacataagtcaatcaagacattataaaagtggg |
32940017 |
T |
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| Q |
313 |
ta-----cnnnnnnnncagtcgatatttgaatttttgttcgtcacacgttgttgaagtctagttccttcatctagaccaacacctt |
393 |
Q |
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| T |
32940016 |
tatttttttttttttccagtcgatatttgaattttagttcatcacacgttgttgaagtctagttccttcatctagaccaacacctt |
32939931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 459 - 507
Target Start/End: Complemental strand, 32939865 - 32939817
Alignment:
| Q |
459 |
gttccttcctctccttttagtacattaattctgagcaaaacacactttc |
507 |
Q |
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| T |
32939865 |
gttccttcctctccttttagtacattagttttgagcaaaacacactttc |
32939817 |
T |
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