View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15071_low_4 (Length: 346)

Name: NF15071_low_4
Description: NF15071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15071_low_4
NF15071_low_4
[»] chr7 (1 HSPs)
chr7 (53-328)||(3417516-3417791)
[»] chr5 (2 HSPs)
chr5 (60-328)||(12540600-12540868)
chr5 (62-328)||(28385249-28385515)
[»] chr2 (3 HSPs)
chr2 (60-310)||(13448296-13448546)
chr2 (53-310)||(13440133-13440390)
chr2 (53-310)||(13454767-13455024)
[»] chr4 (4 HSPs)
chr4 (62-310)||(48965262-48965510)
chr4 (53-306)||(48958081-48958337)
chr4 (157-310)||(48912438-48912591)
chr4 (53-123)||(48961413-48961486)
[»] chr6 (2 HSPs)
chr6 (53-306)||(12483450-12483709)
chr6 (89-228)||(12590197-12590336)
[»] scaffold0536 (2 HSPs)
scaffold0536 (89-301)||(10518-10730)
scaffold0536 (53-290)||(6497-6737)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 53 - 328
Target Start/End: Original strand, 3417516 - 3417791
Alignment:
Q  53 tggttgtcgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtag 152  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3417516 tggttgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcggtag 3417615  T
Q  153 ggggatttatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaa 252  Q
    |||||||||||||||||||||||||||||||||| || ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3417616 ggggatttatgacacattgtggggggaactcatttgttgaggctgttggtgcaggagttccaatgataacgtggccgggtcatggagatcaattgttcaa 3417715  T
Q  253 tgagaaactaataacacaagttcgaggaattggagtggaagtaggtgcaacagaatggcgtgcacatggtattggg 328  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3417716 tgagaaactaataacacaagtccgaggaattggagtggaagtaggtgcaacagaatggcgtgcacatggtattggg 3417791  T

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Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 60 - 328
Target Start/End: Complemental strand, 12540868 - 12540600
Alignment:
Q  60 cgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatt 159  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  12540868 cgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatt 12540769  T
Q  160 tatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaa 259  Q
    |||||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||||||    
T  12540768 tatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgagaaa 12540669  T
Q  260 ctaataacacaagttcgaggaattggagtggaagtaggtgcaacagaatggcgtgcacatggtattggg 328  Q
    ||||||||||| || |||||||||||||| ||||||||||||||||||||| || || |||||| ||||    
T  12540668 ctaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggg 12540600  T

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Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 62 - 328
Target Start/End: Complemental strand, 28385515 - 28385249
Alignment:
Q  62 aagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggattta 161  Q
    |||||||||||||||||||||||||||||||||||||| ||  | ||||||||||||||||| |||| |||||||||| | |||||||| |||||||||     
T  28385515 aagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggggggatttc 28385416  T
Q  162 tgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaact 261  Q
    |||||||||| || ||||||||| | |||||||||||| | ||||||||||||||||||||||||||  |||||| |||||| ||   |||||||||| |    
T  28385415 tgacacattgcggagggaactcaattgtagaggctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgagaaatt 28385316  T
Q  262 aataacacaagttcgaggaattggagtggaagtaggtgcaacagaatggcgtgcacatggtattggg 328  Q
     ||||||  ||| ||| ||||||||||||||||||||| ||| |||||| || || |||||| ||||    
T  28385315 gataacaacagtccgaagaattggagtggaagtaggtgtaacggaatggtgtacaaatggtaatggg 28385249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 60 - 310
Target Start/End: Complemental strand, 13448546 - 13448296
Alignment:
Q  60 cgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatt 159  Q
    ||||||||||||| |||||||| || || ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||    
T  13448546 cgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcagtggggggatt 13448447  T
Q  160 tatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaa 259  Q
    |||||| ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||    
T  13448446 tatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaatgagaaa 13448347  T
Q  260 ctaataacacaagttcgaggaattggagtggaagtaggtgcaacagaatgg 310  Q
    || ||||||||| | |||||||||||||| ||||| |||||||||||||||    
T  13448346 ctgataacacaattccgaggaattggagttgaagtcggtgcaacagaatgg 13448296  T

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Target: chr2; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 53 - 310
Target Start/End: Complemental strand, 13440390 - 13440133
Alignment:
Q  53 tggttgtcgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtag 152  Q
    |||||| | |||||||| || |||||||||||| | | || |||||||||| ||| ||||||||||||||| ||| ||||||||||||| |||||||| |    
T  13440390 tggttgccaaagggattcgaagagagaaacattaggaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcggtgg 13440291  T
Q  153 ggggatttatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaa 252  Q
    ||||||||||||| ||||| |||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||    
T  13440290 ggggatttatgacgcattgcggggggaactcaattgtagagtctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaa 13440191  T
Q  253 tgagaaactaataacacaagttcgaggaattggagtggaagtaggtgcaacagaatgg 310  Q
     ||||||||  |||||||| |||||||||||||||||||||| |||||||| ||||||    
T  13440190 cgagaaactggtaacacaatttcgaggaattggagtggaagtcggtgcaacggaatgg 13440133  T

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Target: chr2; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 53 - 310
Target Start/End: Complemental strand, 13455024 - 13454767
Alignment:
Q  53 tggttgtcgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtag 152  Q
    |||||| ||||||||||||| |||| |||||| |  || |||||||||||| ||||||||||||||||||| ||| |||||||||| || ||||| || |    
T  13455024 tggttgccgaagggatttgaagagaaaaacatcgagaaaaagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcagtgg 13454925  T
Q  153 ggggatttatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaa 252  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||||||||   |||||||||||||||||||||||| |  |||||||||||||| | |||    
T  13454924 ggggatttatgacgcattgcggggggaactcaatcgtagaggctgttagcatgggagttccaatgataacgtggccagtccatggagatcaattctacaa 13454825  T
Q  253 tgagaaactaataacacaagttcgaggaattggagtggaagtaggtgcaacagaatgg 310  Q
     ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||    
T  13454824 cgagaaactaataacacaagttcgaggaattggaattgaagtcggtgcaacagaatgg 13454767  T

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Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 62 - 310
Target Start/End: Complemental strand, 48965510 - 48965262
Alignment:
Q  62 aagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggattta 161  Q
    |||||||| || |||||||||||||||||||||||||||||  ||||||||||||| || ||||||| |||  ||||||| || || || || |  ||||    
T  48965510 aagggattcgaagagagaaacattggaaagaagggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctgtgggtgccttta 48965411  T
Q  162 tgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaact 261  Q
    |||| ||||||||  |||||||    || ||||||||| ||||||| ||||| ||||| || |||||    |||||||| ||||| | ||| || |||||    
T  48965410 tgactcattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaact 48965311  T
Q  262 aataacacaagttcgaggaattggagtggaagtaggtgcaacagaatgg 310  Q
     |||||| |||| ||||| |||||||||||||| |||||||||||||||    
T  48965310 gataacagaagtgcgagggattggagtggaagttggtgcaacagaatgg 48965262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 53 - 306
Target Start/End: Complemental strand, 48958337 - 48958081
Alignment:
Q  53 tggttgtcgaagggatttgaggagagaaacattggaaagaag---ggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcgg 149  Q
    |||||| |||| ||||| || |||||||||||||||||||||   ||||||||| ||||||| ||||||||||| |||  |||  |||||||   ||| |    
T  48958337 tggttgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccg 48958238  T
Q  150 tagggggatttatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgtt 249  Q
    | || | ||||||||||||||| ||| |||||||    || ||||||||||| ||||| ||||||||||| ||||||||||  |||||||| ||||| |     
T  48958237 tgggtgcatttatgacacattgcgggtggaactccactgtggaggctgttagcgcgggggttccaatgatcacgtggccggtgcatggagaacaattcta 48958138  T
Q  250 caatgagaaactaataacacaagttcgaggaattggagtggaagtaggtgcaacaga 306  Q
    |||||||||  | |||||  | || ||||||||||| ||||| || |||||||||||    
T  48958137 caatgagaagttgataactaatgtgcgaggaattggggtggaggttggtgcaacaga 48958081  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 310
Target Start/End: Original strand, 48912438 - 48912591
Alignment:
Q  157 atttatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgag 256  Q
    ||||||||||||||||||| |||| ||    || ||||| |||||||| || ||||||||||| |||||||||   |||||||| || || | |||||||    
T  48912438 atttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacagttttacaatgag 48912537  T
Q  257 aaactaataacacaagttcgaggaattggagtggaagtaggtgcaacagaatgg 310  Q
    ||  | |||||||| || |  || ||||| ||||| || |||||||| ||||||    
T  48912538 aagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatgg 48912591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 48961486 - 48961413
Alignment:
Q  53 tggttgtcgaagggatttgaggagagaaacattgga---aagaagggtttgatcgttaggggttgggccccaca 123  Q
    |||||| |||| |||||||| ||||||||||||| |   ||||||||||||||| ||| ||| |||||||||||    
T  48961486 tggttgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccaca 48961413  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 306
Target Start/End: Original strand, 12483450 - 12483709
Alignment:
Q  53 tggttgtcgaagggatttgaggagagaaacattggaaagaa------gggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctg 146  Q
    |||||| |||||||||||||||||||||||||| ||| |||      |||||| ||| | ||||| ||||| |||||||| | ||| |||||||| ||||    
T  12483450 tggttgccgaagggatttgaggagagaaacattagaaggaataagatgggtttaatcatcagggggtgggcaccacaggtactgattttgagccaccctg 12483549  T
Q  147 cggtagggggatttatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaatt 246  Q
    | || || | ||||||||| || |||||  |||| ||  | || || || |||||||| ||  |||||||||| |||||||||| ||| || || || ||    
T  12483550 cagtgggtgcatttatgactcactgtggatggaattctgttgtggaagcggttagtgcagggattccaatgatcacgtggccggttcacggtgaacattt 12483649  T
Q  247 gttcaatgagaaactaataacacaagttcgaggaattggagtggaagtaggtgcaacaga 306  Q
     | |||||||||||| |||||  | || ||||| ||||| |||||||| |||||||||||    
T  12483650 ttacaatgagaaactcataactaatgtgcgagggattggtgtggaagtcggtgcaacaga 12483709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 228
Target Start/End: Original strand, 12590197 - 12590336
Alignment:
Q  89 aagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcg 188  Q
    ||||||||||||||| ||||||||||||||||||| ||   |||  |||||||   ||| || || |  |||||||||||||||||  |||| ||  |||    
T  12590197 aagaagggtttgatcattaggggttgggccccacaagtaatgattatgagccacaatgcagtgggcgcgtttatgacacattgtggatggaattccgtcg 12590296  T
Q  189 tagaggctgttagtgcgggagttccaatgataacgtggcc 228  Q
    | ||||| |||||||| ||| |||| ||||| || |||||    
T  12590297 tggaggcggttagtgctggaattccgatgatcacatggcc 12590336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 89 - 301
Target Start/End: Original strand, 10518 - 10730
Alignment:
Q  89 aagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcg 188  Q
    ||||||||||||||  ||| |||||||||||| ||||||  |||  | |||||  |||  || || |  |||||||||||||||||| |||| ||   ||    
T  10518 aagaagggtttgattattaagggttgggcccctcaggttatgattctaagccacactgttgtgggtgcgtttatgacacattgtgggtggaattccaccg 10617  T
Q  189 tagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattggagt 288  Q
    | ||||| |||||||| || ||||||||||| ||||||||    |||||||| ||||| | |||||||||  | ||||| ||||| || || ||||| |     
T  10618 tggaggcggttagtgcaggggttccaatgatcacgtggccaatgcatggagaacaattttacaatgagaagttgataacgcaagtgcgggggattggggg 10717  T
Q  289 ggaagtaggtgca 301  Q
    |||||| ||||||    
T  10718 ggaagtgggtgca 10730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 290
Target Start/End: Original strand, 6497 - 6737
Alignment:
Q  53 tggttgtcgaagggatttgaggagagaaacattggaaagaag---ggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcgg 149  Q
    |||||| | |||||||| || |||||||| || |||||||||   ||||||||  ||||||||||||| ||||| |||  ||| ||||||||    ||      
T  6497 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctc 6596  T
Q  150 tagggggatttatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgtt 249  Q
    | || |  |||||||| ||||||||| |||| ||    || |||||||||||||| || ||||| ||||| ||||||||||  |||||||| ||||| |     
T  6597 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcatggagaacaatttta 6696  T
Q  250 caatgagaaactaataacacaagttcgaggaattggagtgg 290  Q
    |||||| ||  | |||||||| || ||| ||||||| ||||    
T  6697 caatgaaaagttgataacacaggtgcgacgaattggggtgg 6737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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