View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15071_low_7 (Length: 254)
Name: NF15071_low_7
Description: NF15071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15071_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 19431598 - 19431357
Alignment:
| Q |
1 |
tctatatcaatggtcaaatgcttctgcaccaaatgctactaaaggnnnnnnngggaattaacaggaaaagagaggatgttgaaactccnnnnnnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
19431598 |
tctatatcaatggtcaaatgcttctgcaccaaatgctacttaaggcattttggggaattaacaggaaaagagaggatgttgaaactccaaaaataaaaaa |
19431499 |
T |
|
| Q |
101 |
nnnnncagtattatttaatgaaaagtgatgagataatatatataccctaaagtttaaatgctttattatacccaaatcattgcagtcaaatacattatta |
200 |
Q |
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| T |
19431498 |
gaaaaccgtattatttaatgaaaagtgatgagataatatatataccctaaagtttaaatgctttattatacccaaatcattgcagtcaaatacattatta |
19431399 |
T |
|
| Q |
201 |
agcagcccaaactgagattattattctgaggacagtattatc |
242 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19431398 |
agcagcccaaactgagattattattctgaggacagaattatc |
19431357 |
T |
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