View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15072_high_4 (Length: 233)
Name: NF15072_high_4
Description: NF15072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15072_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 14044617 - 14044493
Alignment:
| Q |
14 |
ctctgtttagaaagaatggcaataatatctttagggagggagttagtacttggcattttttcacactctgttagtagaagattaggaactcattcattgc |
113 |
Q |
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| T |
14044617 |
ctctgtttagaaagaatggcaataatatctttagggagggagttagtactttgcattttttcacactctgttagtagaagattaggaactcattcattgc |
14044518 |
T |
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| Q |
114 |
agatttcatggaaaaatatatcata |
138 |
Q |
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| T |
14044517 |
agatttcatggaaaaatatatcata |
14044493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 14044329 - 14044252
Alignment:
| Q |
140 |
tgtagtttgtgacagactgtcttgttatccaccgctatgtgacgaactatttgcggtggcgccgtagcctccgtctgt |
217 |
Q |
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| T |
14044329 |
tgtagtttgtgacagactgtcttgttatccacatctatgtgacgaactatttgcggtggcgccgtagcctccgtctgt |
14044252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 13930147 - 13930073
Alignment:
| Q |
142 |
tagtttgtgacagactgtcttgttatccaccgctatgtgacgaactatttgcggtggcgccgtagcctccgtctgt |
217 |
Q |
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| T |
13930147 |
tagtttgtgacagactgtcttattatccaccgctatgtgacgaactatttg-tgtggcgccgccgcctccgtctgt |
13930073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 13930405 - 13930348
Alignment:
| Q |
61 |
acttggcattttttcacactctgttagtagaagattaggaactcattcattgcagatt |
118 |
Q |
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| T |
13930405 |
actttgcattttttcactctctgttagtggaagattaagagctcattcattgcagatt |
13930348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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