View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15072_low_4 (Length: 238)
Name: NF15072_low_4
Description: NF15072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15072_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35182169 - 35182391
Alignment:
| Q |
1 |
atcatgacagagtagaaatcatcataaagccacaatctactccacgatcctggttggaaaggaaactgttgccgaacaattttcttccctaattcttgca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35182169 |
atcatgacagagtagaaatcatcataaagccacaatctactccacgatcctggttggaaaggaaactgttgccgaacaattttcttccctaattcttgca |
35182268 |
T |
|
| Q |
101 |
acatttcatgcatatgaatttcattatttctaatagttatgagtgacctctcaatcaaactttgaattccaatatgagggtgcaacccacaagcatctag |
200 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35182269 |
acatttcatgcataagaatttcattatttctaatagttatgaatgacctctcaatcaaactttgaattccaatatgagggtgcaacccacaagcatctag |
35182368 |
T |
|
| Q |
201 |
aattcgcttcacataatcttcct |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
35182369 |
aattcgcttcacataatcttcct |
35182391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 35176210 - 35176430
Alignment:
| Q |
1 |
atcatgacagagtagaaatcatcataaagccacaatctactccacgatcctggttggaaaggaaactgttgccgaacaattttcttccctaattcttgca |
100 |
Q |
| |
|
|||||||||| ||||||||| ||| |||||||||||||||||||| |||| |||| | |||||| ||||| ||||| |||||||| || |||||||||| |
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| T |
35176210 |
atcatgacagggtagaaatcctcaaaaagccacaatctactccacaatccaggttcgccaggaaattgttgtcgaactattttctttcccaattcttgca |
35176309 |
T |
|
| Q |
101 |
acatttcatgcatatgaatttcattatttctaatagttatgagtgacctctcaatcaaactttgaattccaatatgagggtgcaacccacaagcatctag |
200 |
Q |
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|
|||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| || |
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| T |
35176310 |
acatttcatgcatatgaatttcctgatttctaatagttacgagtgacctctcaatcaaactttgaatgccaatgtgaggatgcaacccacaagcatcgag |
35176409 |
T |
|
| Q |
201 |
aattcgcttcacataatcttc |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
35176410 |
aattcgcttcacataatcttc |
35176430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 35053356 - 35053562
Alignment:
| Q |
15 |
gaaatcatcataaagccacaatctactccacgatcctggttggaaaggaaactgttgccgaacaattttcttccctaattcttgcaacatttcatgcata |
114 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| || |||||||||||||| |||||| |
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| T |
35053356 |
gaaatcctcataaagccacaatctactccacgatcctggttcttcaggaaattgttgccgaactattttcttccccaactcttgcaacatttcgtgcata |
35053455 |
T |
|
| Q |
115 |
tgaatttcattatttctaatagttatgagtgacctctcaatcaaactttgaattccaatatgagggtgcaacccacaagcatctagaattcgcttcacat |
214 |
Q |
| |
|
||||| || | ||||||||||||||||||||| || |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35053456 |
tgaatctcctgatttctaatagttatgagtgaactttcaatcaaaccttgaattccaaggtgagggtgcaacccacaagcatctagaattcgcttcacat |
35053555 |
T |
|
| Q |
215 |
aatcttc |
221 |
Q |
| |
|
| ||||| |
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|
| T |
35053556 |
attcttc |
35053562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 35044434 - 35044595
Alignment:
| Q |
61 |
ggaaactgttgccgaacaattttcttccctaattcttgcaacatttcatgcatatgaatttcattatttctaatagttatgagtgacctctcaatcaaac |
160 |
Q |
| |
|
||||| || |||||||||||||||||||| | |||||| ||||| |||||||||||||| || | ||| |||| || || ||||| |||||| | | |
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|
| T |
35044434 |
ggaaattggtgccgaacaattttcttccccagttcttgtaacatatcatgcatatgaatctcctcgtttttaatggtaataagtgatttctcaaggattc |
35044533 |
T |
|
| Q |
161 |
tttgaattccaatatgagggtgcaacccacaagcatctagaattcgcttcacataatcttcc |
222 |
Q |
| |
|
||||||||||||| ||||||| || ||||||||||||||||||||||| |||||||||||| |
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|
| T |
35044534 |
tttgaattccaatttgagggtataatccacaagcatctagaattcgctttacataatcttcc |
35044595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 222
Target Start/End: Original strand, 35104282 - 35104434
Alignment:
| Q |
70 |
tgccgaacaattttcttccctaattcttgcaacatttcatgcatatgaatttcattatttctaatagttatgagtgacctctcaatcaaactttgaattc |
169 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| |||||||||||||| || | ||| | || || |||||||| |||||| | || ||||||| |
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|
| T |
35104282 |
tgccgaacaattttcttccccaattcttgtaacatatcatgcatatgaatctcctggttttttatggtaatgagtgatttctcaaggattctctgaattc |
35104381 |
T |
|
| Q |
170 |
caatatgagggtgcaacccacaagcatctagaattcgcttcacataatcttcc |
222 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||| ||| |||||| ||||| |
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|
| T |
35104382 |
caatgtgagggtgcaatccacaagcatctagaattctctttacataaacttcc |
35104434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 35151891 - 35151775
Alignment:
| Q |
106 |
tcatgcatatgaatttcattatttctaatagttatgagtgacctctcaatcaaactttgaattccaatatgagggtgcaacccacaagcatctagaattc |
205 |
Q |
| |
|
|||||||||||||| || | |||| | || || |||||||| |||||| | |||||||||||||| |||||||| || ||||||||||||||||||| |
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|
| T |
35151891 |
tcatgcatatgaatctcctgattttttatggtaatgagtgatttctcaagaattctttgaattccaatgtgagggtgtaatccacaagcatctagaattc |
35151792 |
T |
|
| Q |
206 |
gcttcacataatcttcc |
222 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
35151791 |
tcttcacacaatcttcc |
35151775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 498557 - 498701
Alignment:
| Q |
74 |
gaacaattttcttccctaattcttgcaacatttcatgcatatgaatttcattatttctaatagttatgagtgacctctcaatcaaactttgaattccaat |
173 |
Q |
| |
|
||||||||| | |||| || |||||||||||| ||||||||||||||||||| |||||||| ||||||||||| | ||| | | | |||||||||| |
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|
| T |
498557 |
gaacaatttgcctccccaactcttgcaacattccatgcatatgaatttcattgtttctaattgttatgagtgatttttcagcaataagtggaattccaat |
498656 |
T |
|
| Q |
174 |
atgagggtgcaacccacaagcatctagaattcgcttcacataatc |
218 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||| | | |||||||| |
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|
| T |
498657 |
atcagggtgcaatccacaagcatctagaattccccttacataatc |
498701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 220
Target Start/End: Complemental strand, 25639250 - 25639103
Alignment:
| Q |
73 |
cgaacaattttcttccctaattcttgcaacatttcatgcatatgaatttcattatttctaatagttatgagtgacctctcaatcaaactttgaattccaa |
172 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||| | |||| |||| ||||||| ||| | ||| | | | ||||||||| |
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|
| T |
25639250 |
cgaacaattttcttccccaactcttgcaacatttcatgcatatgaatttcctcatttttaatggttatgactgatttttcagcaagaagtggaattccaa |
25639151 |
T |
|
| Q |
173 |
tatgagggtgcaacccacaagcatctagaattcgcttcacataatctt |
220 |
Q |
| |
|
||| ||| ||||| |||||||||||||||||||| | |||||||||| |
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|
| T |
25639150 |
tatcaggatgcaatccacaagcatctagaattcggcttacataatctt |
25639103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 25477259 - 25477408
Alignment:
| Q |
73 |
cgaacaattttcttccctaattcttgcaacatttcatgcatatgaatttcattatttctaatagttatgagtgacctctcaatcaaactttgaattccaa |
172 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||||||||||||||||||| | |||||||||||||| ||||| | |||| | | | ||||||||| |
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|
| T |
25477259 |
cgaacaatttgtttccccaactcttgcaacatttcatgcatatgaatttcttggtttctaatagttattagtgatttttcaacaagaagtggaattccaa |
25477358 |
T |
|
| Q |
173 |
tatgagggtgcaacccacaagcatctagaattcgcttcacataatcttcc |
222 |
Q |
| |
|
||| ||| ||||| |||||||||| |||||||| | | |||||||||||| |
|
|
| T |
25477359 |
tattaggctgcaatccacaagcatgtagaattctccttacataatcttcc |
25477408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 25434782 - 25434823
Alignment:
| Q |
99 |
caacatttcatgcatatgaatttcattatttctaatagttat |
140 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25434782 |
caacatttcatgcatatgaatttcatcatttctaatagttat |
25434823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 25486129 - 25486063
Alignment:
| Q |
74 |
gaacaattttcttccctaattcttgcaacatttcatgcatatgaatttcattatttctaatagttat |
140 |
Q |
| |
|
||||||||| ||||||||| | |||||||||||||| ||||||||||| | ||||||||| ||||| |
|
|
| T |
25486129 |
gaacaatttgcttccctaacttgtgcaacatttcatggatatgaatttcctcatttctaatggttat |
25486063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 25447200 - 25447127
Alignment:
| Q |
67 |
tgttgccgaacaattttcttccctaattcttgcaacatttcatgcatatgaatttcattatttctaatagttat |
140 |
Q |
| |
|
|||| ||||||||||| |||||| || | ||||||||||||||||||| |||||| | |||| |||||||||| |
|
|
| T |
25447200 |
tgttcccgaacaatttgcttccccaacttgtgcaacatttcatgcatataaatttcctcatttataatagttat |
25447127 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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