View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15073_high_5 (Length: 327)
Name: NF15073_high_5
Description: NF15073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15073_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 161 - 312
Target Start/End: Complemental strand, 34452302 - 34452151
Alignment:
| Q |
161 |
aaccttacataacaaagcctacccaaacagtattaaccatgttacatgtaaactgttcctttcatcaattttaggtaaagaatctaaaaggatctaaagt |
260 |
Q |
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| T |
34452302 |
aaccttacataacaaagcctacccaaacagtattaaccatgttacatgtaaactgttcctttcatcaattttatgtaaagaatctaaaaggatctaaagt |
34452203 |
T |
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| Q |
261 |
aaataataaagattaagattcattgcttattgaagaaaaaaggattaaagat |
312 |
Q |
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| T |
34452202 |
aaataataaagattaagattcattgcttattgaagaaaaaaggattaaagat |
34452151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 34452461 - 34452387
Alignment:
| Q |
1 |
actttttatttgtggtcaaactagctatccatcttacttttcatggaagaaagagtgagagaaattcaaatgtaa |
75 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34452461 |
actttttatttgtggtcacattagctatccatcttacttttcatggaagaaagagtgagagaaattcaaatgtaa |
34452387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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