View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15073_high_6 (Length: 325)

Name: NF15073_high_6
Description: NF15073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15073_high_6
NF15073_high_6
[»] chr7 (11 HSPs)
chr7 (1-325)||(39622137-39622461)
chr7 (5-200)||(39547545-39547740)
chr7 (13-179)||(39365955-39366121)
chr7 (3-200)||(39564322-39564519)
chr7 (5-200)||(39538087-39538282)
chr7 (5-179)||(39353445-39353619)
chr7 (5-200)||(39338581-39338776)
chr7 (3-168)||(39589371-39589536)
chr7 (3-168)||(39575133-39575298)
chr7 (5-136)||(1084881-1085013)
chr7 (80-161)||(42133156-42133237)
[»] chr2 (3 HSPs)
chr2 (80-200)||(44223297-44223417)
chr2 (80-200)||(44211135-44211255)
chr2 (80-200)||(44234119-44234239)
[»] chr4 (2 HSPs)
chr4 (58-188)||(2877126-2877256)
chr4 (94-141)||(46451752-46451799)


Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 39622137 - 39622461
Alignment:
Q  1 taattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatcctctggtttttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622137 taattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatcctctggtttttc 39622236  T
Q  101 ttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccactgacaccattcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622237 ttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccactgacaccattcaa 39622336  T
Q  201 taggttcaacctttccccgacaactcgttgattcttcatttcctgcaagttcagagtaagcttatatataactatgaaaatttaacaaacacaggtgttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39622337 taggttcaacctttccccgacaactcgttgattcttcatttcctgcaagttcagagtgagcttatatataactatgaaaatttaacaaacacaggtgttt 39622436  T
Q  301 ctcaatcattttattgtgtttataa 325  Q
    |||||||||||||||||||||||||    
T  39622437 ctcaatcattttattgtgtttataa 39622461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 39547545 - 39547740
Alignment:
Q  5 tttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatcctctggtttttcttcc 104  Q
    |||| |||||||||||  ||| |||||||||||| || |||||||||| ||||||||| ||||||||| |||||||||||||||| |  |||||||| ||    
T  39547545 tttgctcacagtatcctgaaattcttgcaaaggtatcttgcttctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctacc 39547644  T
Q  105 agctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccactgacaccattcaa 200  Q
    ||  |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||||||| |  ||||| ||||| |||||    
T  39547645 agaaagtacatccatcagagttgttttgcctgcaccagtcacacccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaa 39547740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 39366121 - 39365955
Alignment:
Q  13 cagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatcctctggtttttcttccagctagta 112  Q
    ||||||||| ||| ||||||||||||||| |||||||||| ||||||||| ||||||||| |||||||||||||||| |  |||||||| ||||  || |    
T  39366121 cagtatccagaaattcttgcaaaggtttcttgcttctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagca 39366022  T
Q  113 catccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaa 179  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||    
T  39366021 catccatcagagttgttttgccagcaccggtcacacccatcagagccgtgagaacacctggtctgaa 39365955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 39564322 - 39564519
Alignment:
Q  3 attttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatcctctggtttttctt 102  Q
    |||||| |||||||| ||| ||| ||||||||||||||| |||||||||| | |||| |||||||||||| |||||||||||||||||| |||||| ||     
T  39564322 attttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttccta 39564421  T
Q  103 ccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccactgacaccattcaa 200  Q
    ||||  || ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| | |||||||| |  ||||| ||||| |||||    
T  39564422 ccagaaagcacatccatcagagttgttttgccagcaccggtcacacccattagagcagtgagaacaccaggtctgaaagctccacttacacccttcaa 39564519  T

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Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 39538087 - 39538282
Alignment:
Q  5 tttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatcctctggtttttcttcc 104  Q
    |||| |||||||||||  ||| |||||||||||| || |||||||||| ||||||||||||||||||| |||||||||||||||| |  |||||||| ||    
T  39538087 tttgctcacagtatcctgaaattcttgcaaaggtatcttgcttctttggatagccagaaattgtgatgttcccaccaatatatccaccagtttttctacc 39538186  T
Q  105 agctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccactgacaccattcaa 200  Q
    ||  || ||||||||||||||||||||||| ||||| || || ||||||||||| ||||||||| | |||||||| |  ||||||| ||| |||||    
T  39538187 agaaagcacatccatcagagttgttttgcctgcacccgtgacgcccatcagagcagtgagaacacctggtctgaaagctccactgagacctttcaa 39538282  T

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Target: chr7; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 39353619 - 39353445
Alignment:
Q  5 tttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatcctctggtttttcttcc 104  Q
    |||| |||||||||||| ||| ||||||||||||||| ||||| |||| |||||| |||||||||||| |||||||||||||||| | ||||||||| ||    
T  39353619 tttgctcacagtatccagaaattcttgcaaaggtttcttgcttttttggatagccggaaattgtgatgttcccaccaatatatccaccggtttttctacc 39353520  T
Q  105 agctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaa 179  Q
    ||  || |||||||| ||||||||||| ||||||||||| |  ||||||||||| ||||||||| | ||||||||    
T  39353519 agaaagcacatccattagagttgtttttccagcaccagtgatgcccatcagagccgtgagaacacctggtctgaa 39353445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 200
Target Start/End: Complemental strand, 39338776 - 39338581
Alignment:
Q  5 tttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatcctctggtttttcttcc 104  Q
    |||| |||||||||||| ||| ||||||||||||||| |||||||||| | |||| |||||| ||||| |||||||||||||||| |  |||||||| ||    
T  39338776 tttgctcacagtatccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattttgatgttcccaccaatatatccaccagtttttctacc 39338677  T
Q  105 agctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccactgacaccattcaa 200  Q
    ||  || |||||||||||||||||||| |||||||| || |  ||||||||||| ||||||||| | |||||||| |  ||||| ||||| |||||    
T  39338676 agaaagcacatccatcagagttgttttcccagcaccggtgatgcccatcagagcggtgagaacacctggtctgaaagctccacttacacccttcaa 39338581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 39589371 - 39589536
Alignment:
Q  3 attttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatcctctggtttttctt 102  Q
    |||||| |||||||||||| ||| ||||||||| ||||| |||||||| | ||| |||||||||||||||||||||||||||||||| |  ||||||||     
T  39589371 attttgctcacagtatccagaaattcttgcaaatgtttcttgcttcttaggatatccagaaattgtgatggtcccaccaatatatccaccagtttttcta 39589470  T
Q  103 ccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaaca 168  Q
    ||||  || ||||||| || ||| ||||| |||||||| || || ||||| | ||| |||||||||    
T  39589471 ccagaaagcacatccaacaaagtagtttttccagcacccgtgacgcccattaaagcagtgagaaca 39589536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 39575133 - 39575298
Alignment:
Q  3 attttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatcctctggtttttctt 102  Q
    |||||| |||||||||||  ||| ||||||||||||||| ||||| || | ||  || |||| ||||||| |||||| ||||||||| |   |||| ||     
T  39575133 attttgctcacagtatccggaaattcttgcaaaggtttcttgctttttgggatgcccggaaactgtgatgttcccactaatatatcccccacttttccta 39575232  T
Q  103 ccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaaca 168  Q
    ||||| ||||||||||||| ||||||||||||||||||||| |||||||| || || |||||||||    
T  39575233 ccagcaagtacatccatcaaagttgttttgccagcaccagtgacacccataagtgcagtgagaaca 39575298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 1084881 - 1085013
Alignment:
Q  5 tttgttcacagtatccacaaactcttgcaaaggtttcctgctt--ctttgaatagccagaaattgtgatggtcccaccaatatatcctctggtttttctt 102  Q
    |||| |||||||||||| ||| ||||| ||| ||||| |||||  || || ||||||||||||| ||||| ||||||||||||||||    ||||||||     
T  1084881 tttgctcacagtatccagaaattcttgtaaatgtttcttgcttttctatggatagccagaaattatgatgttcccaccaatatatccatcagtttttcta 1084980  T
Q  103 ccagctagtacatccatcagagttgttttgccag 136  Q
    ||||  || |||||||||| ||||||||||||||    
T  1084981 ccag-aagcacatccatcaaagttgttttgccag 1085013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 42133156 - 42133237
Alignment:
Q  80 caatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgt 161  Q
    |||||||||| |  ||||||||||| |||| ||||||||| || ||||| || ||||||||| | |||||||| || |||||    
T  42133156 caatatatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccataagtgctgt 42133237  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 44223297 - 44223417
Alignment:
Q  80 caatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaa 179  Q
    |||||||||| |  ||||| || ||||| || |||||||||||||||||||| ||||| ||| | |||||||||| ||||||||||||| | || |||||    
T  44223297 caatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaa 44223396  T
Q  180 tgaaccactgacaccattcaa 200  Q
    || |||||| ||||| |||||    
T  44223397 tgcaccactaacacccttcaa 44223417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 44211135 - 44211255
Alignment:
Q  80 caatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaa 179  Q
    |||||||||| |  ||||| || ||||| || |||||||||||||||||||| ||||| ||| | |||||||||| ||||||||||||| | || |||||    
T  44211135 caatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaa 44211234  T
Q  180 tgaaccactgacaccattcaa 200  Q
    || ||| || ||||| |||||    
T  44211235 tgcaccgctaacacccttcaa 44211255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 44234119 - 44234239
Alignment:
Q  80 caatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaa 179  Q
    |||||||||| |  ||||| || ||||| || |||||||||||||||||||| ||||| ||| | |||||||||| ||| || || ||| | || |||||    
T  44234119 caatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagccgtaagtacaccaggcctgaa 44234218  T
Q  180 tgaaccactgacaccattcaa 200  Q
    ||  ||||| ||||| |||||    
T  44234219 tgcgccactaacacccttcaa 44234239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 188
Target Start/End: Complemental strand, 2877256 - 2877126
Alignment:
Q  58 ccagaaattgtgatggtcccaccaatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagag 157  Q
    ||||||||| | ||| ||||| ||||||| || || ||||| || ||||| | ||||||||||| ||| ||||| ||||| ||| | |||||||||| ||    
T  2877256 ccagaaatttttatgctcccatcaatataaccactagttttcctaccagccaatacatccatcaaagtagttttaccagctccactaacacccatcaaag 2877157  T
Q  158 ctgtgagaacagccggtctgaatgaaccact 188  Q
    ||||||||||| | ||||| |||| ||||||    
T  2877156 ctgtgagaacaccaggtctaaatgcaccact 2877126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 46451799 - 46451752
Alignment:
Q  94 gtttttcttccagctagtacatccatcagagttgttttgccagcacca 141  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||||||    
T  46451799 gtttttcttccagctaatacatccatcagagtggttttcccagcacca 46451752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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