View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15073_low_1 (Length: 655)

Name: NF15073_low_1
Description: NF15073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15073_low_1
NF15073_low_1
[»] chr7 (3 HSPs)
chr7 (140-550)||(13092974-13093388)
chr7 (21-112)||(13092877-13092968)
chr7 (303-339)||(13092170-13092206)
[»] chr6 (10 HSPs)
chr6 (230-453)||(16517936-16518158)
chr6 (568-655)||(16517796-16517883)
chr6 (140-216)||(30031691-30031767)
chr6 (552-591)||(24898242-24898281)
chr6 (559-591)||(24934832-24934864)
chr6 (559-591)||(30053592-30053624)
chr6 (341-388)||(30053775-30053822)
chr6 (550-588)||(30577561-30577599)
chr6 (475-511)||(16517883-16517919)
chr6 (559-591)||(29949699-29949731)
[»] chr4 (1 HSPs)
chr4 (559-591)||(44262395-44262427)
[»] chr8 (1 HSPs)
chr8 (559-588)||(9782707-9782736)
[»] chr3 (1 HSPs)
chr3 (552-588)||(24226988-24227024)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 140 - 550
Target Start/End: Original strand, 13092974 - 13093388
Alignment:
Q  140 tttatggtttaaaaactgaaccttttccaaatagtttctgtattagtacataatcattttccctccttaatccttagtgtcatgttatcagcaaaatatt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13092974 tttatggtttaaaaactgaaccttttccaaatagtttctgtattagtacataatcattttccctccttaatccttagtgtcatgttatcagaaaaatatt 13093073  T
Q  240 cctttatttcttaaaagattttgtcgaaaactttctgttgaaatagtcagctttctgttgaaaactttaataaaaaactaaattgaaagtgtagtacatc 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||    
T  13093074 cctttatttcttaaaagattttgtcgaaaactttctgttgaaatagtcagctttctgttgaaaactttaataaaacactaaattgaaagtgtagtccgtc 13093173  T
Q  340 gttcttgtcattttcgaacaaaacaca--aataagagtttcatatcttacatgttacatcgttaggggtgcaatcgtcggtcttcaaatttttcaagttc 437  Q
    |||||||||||||| ||||||||||||  |  ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||      
T  13093174 gttcttgtcatttttgaacaaaacacaacacaaagagtttcatatgttacatgttacatcgttaggggtgcaatcgttggtcttcaaatttttcaagtag 13093273  T
Q  438 ggacaatgcttcattagac--nnnnnnnnnnnnnnnnncctctgtacaaagcctatcaatcatcatagtatacatccttacatcaaaatgataattgttg 535  Q
     ||||||||||||||| ||                   ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13093274 agacaatgcttcattaaacaaaaactaaaacaaaaaaacctttttacaaagcctatcaatcatcatagtatacatccttacatcaaaatgataattgttg 13093373  T
Q  536 attagaagtatcata 550  Q
    |||||||||||||||    
T  13093374 attagaagtatcata 13093388  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 13092877 - 13092968
Alignment:
Q  21 tagattgcggcgctaatggtgtttgttgaaatatgatcataatgtagactaaaaatttggcatatataatgttcactgtaaattgtagatac 112  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13092877 tagattgcggcactaatggtgtttgttgaaatatgatcataaagtagactaaaaatttggcatatataatgttcactgtaaattgttgatac 13092968  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 13092206 - 13092170
Alignment:
Q  303 actttaataaaaaactaaattgaaagtgtagtacatc 339  Q
    |||||||||||||||||||||||||||||||| ||||    
T  13092206 actttaataaaaaactaaattgaaagtgtagtccatc 13092170  T

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Target: chr6 (Bit Score: 184; Significance: 3e-99; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 230 - 453
Target Start/End: Complemental strand, 16518158 - 16517936
Alignment:
Q  230 gcaaaatattcctttatttcttaaaagattttgtcgaaaactttctgttgaaatagtcagctttctgttgaaaactttaataaaaaactaaattgaaagt 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16518158 gcaaaatattcctttatttcttaaaagattttgtcgaaaactttctgttgaaatagtcagctttctgttgaaaactttaataaaacactaaattgaaagt 16518059  T
Q  330 gtagtacatcgttcttgtcattttcgaacaaaacacaaataagagtttcatatcttacatgttacatcgttaggggtgcaatcgtcggtcttcaaatttt 429  Q
    ||||| | ||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| ||| ||||||||||||||    
T  16518058 gtagtccgtcgttctagtcattttcgaacaaaacacaaa-aagagtttcatatgttacatgttacatcgttatgggtgcaaccgttggtcttcaaatttt 16517960  T
Q  430 tcaagttcggacaatgcttcatta 453  Q
    ||||||||||||||||||||||||    
T  16517959 tcaagttcggacaatgcttcatta 16517936  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 568 - 655
Target Start/End: Complemental strand, 16517883 - 16517796
Alignment:
Q  568 cttaagtcttccatttttgcataggcattaacaagtaatgtctatttatacatgtctcgctgagttctcgggtctgtgctcctcctca 655  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||| || || ||||||    
T  16517883 cttaagtctttcatttttgcataggcattaacaagtattgtctatttatacatgtttcgctgagttctctggtctttgatcttcctca 16517796  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 30031691 - 30031767
Alignment:
Q  140 tttatggtttaaaaactgaaccttttccaaatagtttctgtattagtacataatcattttccctccttaatccttag 216  Q
    ||||||||||||||| |||| ||||| ||  || ||||| |||||||||||||| ||||| ||||||||||||||||    
T  30031691 tttatggtttaaaaagtgaatctttttcagttattttctctattagtacataatgatttttcctccttaatccttag 30031767  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 552 - 591
Target Start/End: Complemental strand, 24898281 - 24898242
Alignment:
Q  552 aaacctattgtgcatccttaagtcttccatttttgcatag 591  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  24898281 aaacctcttgtgcatccttaagtcttccatttttgcatag 24898242  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 591
Target Start/End: Complemental strand, 24934864 - 24934832
Alignment:
Q  559 ttgtgcatccttaagtcttccatttttgcatag 591  Q
    |||||||||||||||||||||||||||||||||    
T  24934864 ttgtgcatccttaagtcttccatttttgcatag 24934832  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 591
Target Start/End: Complemental strand, 30053624 - 30053592
Alignment:
Q  559 ttgtgcatccttaagtcttccatttttgcatag 591  Q
    |||||||||||||||||||||||||||||||||    
T  30053624 ttgtgcatccttaagtcttccatttttgcatag 30053592  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 388
Target Start/End: Complemental strand, 30053822 - 30053775
Alignment:
Q  341 ttcttgtcattttcgaacaaaacacaaataagagtttcatatcttaca 388  Q
    |||||||| |||||||||||| |||||||||||||||| ||| |||||    
T  30053822 ttcttgtcgttttcgaacaaagcacaaataagagtttcgtatgttaca 30053775  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 588
Target Start/End: Original strand, 30577561 - 30577599
Alignment:
Q  550 aaaaacctattgtgcatccttaagtcttccatttttgca 588  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  30577561 aaaaatctcttgtgcatccttaagtcttccatttttgca 30577599  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 475 - 511
Target Start/End: Complemental strand, 16517919 - 16517883
Alignment:
Q  475 ctctgtacaaagcctatcaatcatcatagtatacatc 511  Q
    |||| |||||||| |||||||||||||||||||||||    
T  16517919 ctctttacaaagcgtatcaatcatcatagtatacatc 16517883  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 559 - 591
Target Start/End: Original strand, 29949699 - 29949731
Alignment:
Q  559 ttgtgcatccttaagtcttccatttttgcatag 591  Q
    ||||||||||| |||||||||||||||||||||    
T  29949699 ttgtgcatcctcaagtcttccatttttgcatag 29949731  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 591
Target Start/End: Original strand, 44262395 - 44262427
Alignment:
Q  559 ttgtgcatccttaagtcttccatttttgcatag 591  Q
    |||||||||||||||||||||||||||||||||    
T  44262395 ttgtgcatccttaagtcttccatttttgcatag 44262427  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 588
Target Start/End: Complemental strand, 9782736 - 9782707
Alignment:
Q  559 ttgtgcatccttaagtcttccatttttgca 588  Q
    ||||||||||||||||||||||||||||||    
T  9782736 ttgtgcatccttaagtcttccatttttgca 9782707  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 588
Target Start/End: Complemental strand, 24227024 - 24226988
Alignment:
Q  552 aaacctattgtgcatccttaagtcttccatttttgca 588  Q
    |||||| |||||||||| |||||||||||||||||||    
T  24227024 aaacctcttgtgcatccctaagtcttccatttttgca 24226988  T

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