View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15073_low_10 (Length: 308)
Name: NF15073_low_10
Description: NF15073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15073_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 3 - 289
Target Start/End: Original strand, 15493675 - 15493961
Alignment:
| Q |
3 |
gtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttgcagcagcgaacact |
102 |
Q |
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| T |
15493675 |
gtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttgcagcagcgaacact |
15493774 |
T |
|
| Q |
103 |
ccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttcatgctcatttgagaaca |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15493775 |
ccagtagcaatgactgttgaaattagcatacaagactcggcagtttttttcatccaagactctgcatcttcccttagtttttcatgctcattcgagaaca |
15493874 |
T |
|
| Q |
203 |
gttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaaaacat |
289 |
Q |
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| T |
15493875 |
gttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaaaacat |
15493961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 286
Target Start/End: Original strand, 15517502 - 15517784
Alignment:
| Q |
4 |
tctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttgcagcagcgaacactc |
103 |
Q |
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||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |
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| T |
15517502 |
tctgatattgcaaaccccaaaaatgatggtttcttcaaaaagtttggttttcctgtgttatcgataccacctggtaaagtaactgcagcagcgaacactc |
15517601 |
T |
|
| Q |
104 |
cagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttcatgctcatttgagaacag |
203 |
Q |
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| T |
15517602 |
cggtagcaatgactgttgaaattagcatacacgactccgcagtttttttcatccaagactctgcatcttcccttagtttttcatgctcatttgagaacag |
15517701 |
T |
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| Q |
204 |
ttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaaaa |
286 |
Q |
| |
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|||||||||||||| | ||||||||||||| |||||||| ||||| |||| ||||||||||||||| |||||||||| ||||| |
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| T |
15517702 |
ttcttctgcagtcacgcctttggagtttttcgacttaatctgtgcgggcagcattatcttctttacattctatcatatgaaaa |
15517784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 4 - 286
Target Start/End: Original strand, 15534015 - 15534297
Alignment:
| Q |
4 |
tctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttgcagcagcgaacactc |
103 |
Q |
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|||||| ||||||| |||||||||| || |||| |||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15534015 |
tctgatgttgcaaataccaagaatggtgttttcgtcaactagtttggttttccggtgtcatcggtaccacctggtaaagtaactgcagcagcgaacactc |
15534114 |
T |
|
| Q |
104 |
cagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttcatgctcatttgagaacag |
203 |
Q |
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| ||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||| |||||||||||| |||||||||||||||| | |
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| T |
15534115 |
cggtagcaatgactgttgaaattagcatacatgactccgcagtttttttcatccaagactctgcatcctcccttagttttgcatgctcatttgagaataa |
15534214 |
T |
|
| Q |
204 |
ttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaaaa |
286 |
Q |
| |
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|||| |||||||| | || |||||||| |||| ||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
15534215 |
ctcttgtgcagtcaagcgttcagagtttttcaactttatttgtgctggcaacattatcttctttacattctatcatatgaaaa |
15534297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 4 - 274
Target Start/End: Original strand, 15654468 - 15654738
Alignment:
| Q |
4 |
tctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttgcagcagcgaacactc |
103 |
Q |
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|||||||||||||||||||||||||||| ||| ||||| |||| ||||||||| | |||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
15654468 |
tctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagagtcatcggtaccgcctggtaaagtagttgcagcagcaaacactc |
15654567 |
T |
|
| Q |
104 |
cagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttcatgctcatttgagaacag |
203 |
Q |
| |
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| ||||||||||| |||||||||||||| ||||||||||||| |||||| |||||||||| ||| |||||| ||||||||||| ||||||| || |
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| T |
15654568 |
cggtagcaatgacagttgaaattagcatgcaagactcggcagtttttttcatccacgactctgcattttctcttagtgtttcatgctcaattgagaatag |
15654667 |
T |
|
| Q |
204 |
ttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttct |
274 |
Q |
| |
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|||| |||||| | | ||| |||||| | ||| || ||||| ||||||||||||||||||||||||| |
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| T |
15654668 |
ctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttct |
15654738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 274
Target Start/End: Original strand, 15645416 - 15645686
Alignment:
| Q |
4 |
tctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttgcagcagcgaacactc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||| |||| ||||||||| | |||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
15645416 |
tctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagagtcatcggtaccgcctggtaaagtagttgcagcagcaaacactc |
15645515 |
T |
|
| Q |
104 |
cagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttcatgctcatttgagaacag |
203 |
Q |
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| ||||||||||| |||||||||||||| ||||||||||| | |||||| |||||||||| ||| |||||| ||||||||||| ||||||| || |
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| T |
15645516 |
cggtagcaatgacagttgaaattagcatgcaagactcggccgtttttttcatccacgactctgcattttctcttagtgtttcatgctcaattgagaatag |
15645615 |
T |
|
| Q |
204 |
ttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttct |
274 |
Q |
| |
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|||| |||||| | | ||| |||||| | ||| || ||||| ||||||||||||||||||||||||| |
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| T |
15645616 |
ctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttct |
15645686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 15601209 - 15601481
Alignment:
| Q |
14 |
caaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttgcagcagcgaacactccagtagcaat |
113 |
Q |
| |
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|||||||||| ||||||||||||||||| || ||||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||||| |||||||| |
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| T |
15601209 |
caaacaccaaaaatgatggtttcttcaaataatttggttttcctgtgtcatcgataccgcctggtacagtagttgcagcagcaaacactccggtagcaat |
15601308 |
T |
|
| Q |
114 |
gactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttcatgctcatttgagaacagttcttctgca |
213 |
Q |
| |
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||| | ||||||||||||||||||||| || | |||||| |||||||||| ||| |||||||||| |||||| |||||||| | ||||| |||| |
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| T |
15601309 |
gacggctgaaattagcatacaagactctgcggttttcttcatccatgactctgcattttctcttagtttttgatgctcttttgagaagacttcttgtgca |
15601408 |
T |
|
| Q |
214 |
gtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaaaa |
286 |
Q |
| |
|
|| | | ||| |||||| | || ||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
15601409 |
gtaaggccttcagagtttctcatgtttatttgtgctggcagcattatcttctttactttctatcatatgaaaa |
15601481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 274
Target Start/End: Original strand, 15624791 - 15625061
Alignment:
| Q |
4 |
tctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttgcagcagcgaacactc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||| |||| ||||||||| | ||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
15624791 |
tctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagaatcatcggtaccgcctggtaaagtagttgcagcagcaaacactc |
15624890 |
T |
|
| Q |
104 |
cagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttcatgctcatttgagaacag |
203 |
Q |
| |
|
| ||||||||||| |||||||||||||| ||||||||||||| |||||| |||||||| | ||| |||||| ||||||||||| ||||||| || |
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| T |
15624891 |
cggtagcaatgacagttgaaattagcatgcaagactcggcagtttttttcatccacgactctgcgttttctcttagtgtttcatgctcaattgagaatag |
15624990 |
T |
|
| Q |
204 |
ttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttct |
274 |
Q |
| |
|
|||| ||| || | | ||| |||||| | ||| || ||| | ||||||||||||||||||||||||| |
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| T |
15624991 |
ctcttgtgctgtaaagccttcagagtttctcatctttatctgtccaggcaacattatcttctttactttct |
15625061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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