View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15073_low_14 (Length: 247)

Name: NF15073_low_14
Description: NF15073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15073_low_14
NF15073_low_14
[»] chr7 (9 HSPs)
chr7 (13-247)||(39622661-39622895)
chr7 (77-217)||(39589919-39590059)
chr7 (47-218)||(39539043-39539214)
chr7 (47-207)||(39348294-39348454)
chr7 (47-173)||(39565337-39565463)
chr7 (47-207)||(39365096-39365256)
chr7 (78-207)||(39548424-39548553)
chr7 (62-218)||(39575681-39575837)
chr7 (47-207)||(39336994-39337154)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 39622895 - 39622661
Alignment:
Q  13 attaatcacttgtctggatatctttgtgtttttctgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattcttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622895 attaatcacttgtctggatatctttgtgtttttctgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattcttt 39622796  T
Q  113 actcagtccaactggtattggataggttttggtgccttgattggatacacattactattcatcattggttacattcttgctcttactttcttgaaccgta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622795 actcagtccaactggtattggataggttttggtgccttgattggatacacattactattcatcattggttacattcttgctcttactttcttgaaccgta 39622696  T
Q  213 agtttcaccaaccttagcaaaataaataaaagctt 247  Q
    |||||||||||||||||||||||||||||||||||    
T  39622695 agtttcaccaaccttagcaaaataaataaaagctt 39622661  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 39590059 - 39589919
Alignment:
Q  77 ctaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtgccttgattggatacacattactattcatca 176  Q
    ||||||||| || ||||||||||||| || ||||||||||||||  |||||||||||||||||||||| ||  |||||||||||||||||||||||| |     
T  39590059 ctaggagttgaaattttgaaatctcgagggttctttactcagtcttactggtattggataggttttggagcaatgattggatacacattactattcaact 39589960  T
Q  177 ttggttacattcttgctcttactttcttgaaccgtaagttt 217  Q
    |||||||| | ||||||||  ||| |||||||||| |||||    
T  39589959 ttggttacctacttgctctcgcttacttgaaccgtgagttt 39589919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 218
Target Start/End: Complemental strand, 39539214 - 39539043
Alignment:
Q  47 tgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtg 146  Q
    ||||||||| | || |||||||| |||||  |||||||| |||||||||||||||  |||||||||| | || |  ||||||| ||||||||| ||||||    
T  39539214 tgaaaggttctccctaactcaacggaaccgataggagttgaagttttgaaatctcacggattctttagtgagccatactggtactggataggtgttggtg 39539115  T
Q  147 ccttgattggatacacattactattcatcattggttacattcttgctcttactttcttgaaccgtaagtttc 218  Q
    | ||||||||||| |||||| | |||| | |||| || || |||||||| ||||||||||| ||||||||||    
T  39539114 ctttgattggatatacattaatcttcaactttggatatatccttgctctcactttcttgaatcgtaagtttc 39539043  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 207
Target Start/End: Original strand, 39348294 - 39348454
Alignment:
Q  47 tgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtg 146  Q
    ||||||||| | || |||||||| ||| ||||||||||| ||||||||||||||||  | ||||||||| || |  | |||||||||||| || ||||||    
T  39348294 tgaaaggttcttcctaactcaaccgaatcactaggagttgaagttttgaaatctcgcagtttctttactgagacatattggtattggatatgtgttggtg 39348393  T
Q  147 ccttgattggatacacattactattcatcattggttacattcttgctcttactttcttgaa 207  Q
    | ||||||||||| |||||||| |||| | |||| || || |||||||| |||||||||||    
T  39348394 ctttgattggatatacattacttttcaactttggatatatccttgctctcactttcttgaa 39348454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 39565463 - 39565337
Alignment:
Q  47 tgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtg 146  Q
    ||||||||| | || |||||||| || || ||||||||| |||||||||||||||| |||||||| ||| ||||  ||||||| ||||||||| ||||||    
T  39565463 tgaaaggttctgcctaactcaactgagccgctaggagttgaagttttgaaatctcgcggattcttcactgagtcatactggtactggataggtgttggtg 39565364  T
Q  147 ccttgattggatacacattactattca 173  Q
    | ||||||||||| |||||||| ||||    
T  39565363 ctttgattggatatacattacttttca 39565337  T

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Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 47 - 207
Target Start/End: Original strand, 39365096 - 39365256
Alignment:
Q  47 tgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtg 146  Q
    ||||||||| | || |||||||| | | ||||||||||| ||||||||||||||||  | ||||||||| || |  | |||||||||||| || ||||||    
T  39365096 tgaaaggttcttcctaactcaaccggatcactaggagttgaagttttgaaatctcgcagtttctttactgagacatattggtattggatatgtgttggtg 39365195  T
Q  147 ccttgattggatacacattactattcatcattggttacattcttgctcttactttcttgaa 207  Q
    | ||||||||||| |||||||| |||| | |||| || || |||||||| |||||||||||    
T  39365196 ctttgattggatatacattacttttcaactttggatatatccttgctctcactttcttgaa 39365256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 207
Target Start/End: Complemental strand, 39548553 - 39548424
Alignment:
Q  78 taggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtgccttgattggatacacattactattcatcat 177  Q
    |||||||| |||||||||||||||| |||| ||| ||| ||||  ||||||| ||||||||| ||||||| ||||||||||| |||||||| |||| | |    
T  39548553 taggagttgaagttttgaaatctcgcggatacttcactgagtcatactggtactggataggtgttggtgctttgattggatatacattacttttcaactt 39548454  T
Q  178 tggttacattcttgctcttactttcttgaa 207  Q
    ||| || || ||||| || |||||||||||    
T  39548453 tggctatatccttgccctcactttcttgaa 39548424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 39575837 - 39575681
Alignment:
Q  62 aactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtgccttgattggataca 161  Q
    ||||||||  |||| ||||||||| | |||||| |||||||||| |||||||| |||||  |||||||||||||| ||||||  || ||| | ||||| |    
T  39575837 aactcaactaaaccgctaggagttgatgttttggaatctcgtgggttctttacacagtcatactggtattggatatgttttgcggcattgctcggatata 39575738  T
Q  162 cattactattcatcattggttacattcttgctcttactttcttgaaccgtaagtttc 218  Q
    ||||||| |||| | | ||||||||||||||||| |||| ||| || ||| ||||||    
T  39575737 cattactgttcaacttgggttacattcttgctctaacttacttcaatcgtgagtttc 39575681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 207
Target Start/End: Original strand, 39336994 - 39337154
Alignment:
Q  47 tgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtg 146  Q
    ||||||||| | || |||||||| ||| |||| |||||| ||||||||||||||||  | ||||||||| || |  | ||||| |||||| || ||||||    
T  39336994 tgaaaggttcttcctaactcaaccgaatcacttggagttgaagttttgaaatctcgcagtttctttactgagacatattggtactggatatgtgttggtg 39337093  T
Q  147 ccttgattggatacacattactattcatcattggttacattcttgctcttactttcttgaa 207  Q
    | ||||||||||| |||||||| |||| | |||| || || ||||| || |||||||||||    
T  39337094 ctttgattggatatacattacttttcaactttggatatatccttgccctcactttcttgaa 39337154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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