View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15073_low_3 (Length: 578)
Name: NF15073_low_3
Description: NF15073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15073_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 276
Target Start/End: Complemental strand, 25669406 - 25669147
Alignment:
| Q |
17 |
actatgtagcaaaccctccccaaattgaacaaatataggatattctctatctacttctagatctgaaattttgtctagagtgttaattagtctcaaaata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25669406 |
actatgtagcaaaccctccccaaattgaacaaatataagatattctctatctacttctagatctgaaattttgtctagagtgttaattagtctcaaaata |
25669307 |
T |
|
| Q |
117 |
ttcagatctgggtttaattttggatattttgatttgatgaaattggtttgaatannnnnnnatggtgggatcctggannnnnnncataaattttttatgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
25669306 |
ttcagatctgggtttaattttggatattttgatttgatgaaattggtttgaatatttttttatggtgggatcctggatttttttcataaattttttatga |
25669207 |
T |
|
| Q |
217 |
aatggaatgctgtttgttgatgaaagagacactcaaaaattagtgttcatcatctctcaa |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25669206 |
aatggaatgctgtttgttgatgaaagagacactaaaaaattagtgttcatcatctctcaa |
25669147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 277 - 475
Target Start/End: Complemental strand, 25669003 - 25668805
Alignment:
| Q |
277 |
aaatttttaattaacataaatataattgcattattattaaagattctttttgaaaatatcaaactataacatcaaacctactactcaagttgcccttctt |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25669003 |
aaatttttaattaacataaatataattgcattattattaaagattctttttgaaaatatcaaactataacatcaaacctactactcaaattgcccttctt |
25668904 |
T |
|
| Q |
377 |
cgatcttgaccgttgaatatttaaataataaatcaatggtaaaatactcatttttgtatcatacacaaaaagatgaactatggtatcctaaatgccacc |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25668903 |
cgatcttgaccgttgaatatttaaataataaatcaatggtaaaatactcatttttgtatcatacacaaaaagatgaactttggtatcctaaatgccacc |
25668805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 486 - 538
Target Start/End: Original strand, 23087987 - 23088039
Alignment:
| Q |
486 |
gtaagcaataccctgttcaaaagaaacaaggcacgcagaaccgaatacacaaa |
538 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
23087987 |
gtaagcaataccctattcaagagaaacaaggcacgcagaaccgaatacccaaa |
23088039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 475
Target Start/End: Original strand, 41962107 - 41962193
Alignment:
| Q |
389 |
ttgaatatttaaataataaatcaatggtaaaatactcatttttgtatcatacacaaaaagatgaactatggtatcctaaatgccacc |
475 |
Q |
| |
|
|||||| ||| ||||||| ||||||||| ||| ||||| |||||||| |||| |||||| ||||||| |||| |||||||||||| |
|
|
| T |
41962107 |
ttgaattttttaataatatatcaatggtgaaaaactcacttttgtataatacccaaaaacatgaacttgtgtatactaaatgccacc |
41962193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 276
Target Start/End: Complemental strand, 9622662 - 9622403
Alignment:
| Q |
17 |
actatgtagcaaaccctccccaaattgaacaaatataggatattctctatctacttctagatctgaaattttgtctagagtgttaattagtctcaaaata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9622662 |
actatgtagcaaaccctccccaaattgaacaaatataagatattctctatctacttctagatctgaaattttgtctagagtgttaattagtctcaaaata |
9622563 |
T |
|
| Q |
117 |
ttcagatctgggtttaattttggatattttgatttgatgaaattggtttgaatannnnnnnatggtgggatcctggannnnnnncataaattttttatgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
9622562 |
ttcagatctgggtttaattttggatattttgatttgatgaaattggtttgaatatttttttatggtgggatcctggatttttttcataaattttttatga |
9622463 |
T |
|
| Q |
217 |
aatggaatgctgtttgttgatgaaagagacactcaaaaattagtgttcatcatctctcaa |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9622462 |
aatggaatgctgtttgttgatgaaagagacactaaaaaattagtgttcatcatctctcaa |
9622403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 277 - 477
Target Start/End: Complemental strand, 9622259 - 9622059
Alignment:
| Q |
277 |
aaatttttaattaacataaatataattgcattattattaaagattctttttgaaaatatcaaactataacatcaaacctactactcaagttgcccttctt |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9622259 |
aaatttttaattaacataaatataattgcattattattaaagattctttttgaaaatatcaaactataacatcaaacctactactcaaattgcccttctt |
9622160 |
T |
|
| Q |
377 |
cgatcttgaccgttgaatatttaaataataaatcaatggtaaaatactcatttttgtatcatacacaaaaagatgaactatggtatcctaaatgccacct |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9622159 |
cgatcttgaccgttgaatatttaaataataaatcaatggtaaaatactcatttttgtatcatacacaaaaagatgaactttggtatcctaaatgccacct |
9622060 |
T |
|
| Q |
477 |
a |
477 |
Q |
| |
|
| |
|
|
| T |
9622059 |
a |
9622059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 379 - 450
Target Start/End: Complemental strand, 12226385 - 12226314
Alignment:
| Q |
379 |
atcttgaccgttgaatatttaaataataaatcaatggtaaaatactcatttttgtatcatacacaaaaagat |
450 |
Q |
| |
|
||||| ||| ||||||| || ||||||||||||||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
12226385 |
atcttaaccattgaataatttaataataaatcaatggtgaaaagttcatttttgtaccatacacaaaaagat |
12226314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 274 - 474
Target Start/End: Complemental strand, 31154788 - 31154588
Alignment:
| Q |
274 |
caaaaatttttaattaacataaatataattgcattattattaaagattctttttgaaaatatcaaactataacatcaaacctactactcaagttgccctt |
373 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31154788 |
caaaaatttttaattaacataaatacaattgcattattattaaagattctttttgaaaatatcaaactataacatcaaacctactactcaagttgtcctt |
31154689 |
T |
|
| Q |
374 |
cttcgatcttgaccgttgaatatttaaataataaatcaatggtaaaatactcatttttgtatcatacacaaaaagatgaactatgg-tatcctaaatgcc |
472 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| ||||||||| |
|
|
| T |
31154688 |
cttcgatcttgactattgaatatttaaataataaatcaatggtaaaatactcattttt-tatcatacacaaaaagatgaactttggttattctaaatgcc |
31154590 |
T |
|
| Q |
473 |
ac |
474 |
Q |
| |
|
|| |
|
|
| T |
31154589 |
ac |
31154588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 281 - 432
Target Start/End: Complemental strand, 1139847 - 1139695
Alignment:
| Q |
281 |
ttttaattaacataaatataattgcattattattaaagattctttttgaaaatatcaaa-ctataacatcaaacctactactcaagttgcccttcttcga |
379 |
Q |
| |
|
||||||||| |||||||| ||||||||| || ||||||| ||||||| ||||||||||| || ||||| |||||||| || |||||| ||||||||| | |
|
|
| T |
1139847 |
ttttaattaccataaatacaattgcattgttgttaaagactctttttaaaaatatcaaaactttaacaacaaacctattattcaagtaccccttcttcaa |
1139748 |
T |
|
| Q |
380 |
tcttgaccgttgaatatttaaataataaatcaatggtaaaatactcatttttg |
432 |
Q |
| |
|
||||| |||||||||||| | ||||||||||||||||||| || |||||||| |
|
|
| T |
1139747 |
tcttgttcgttgaatattttactaataaatcaatggtaaaaaacccatttttg |
1139695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 361 - 475
Target Start/End: Complemental strand, 22967732 - 22967618
Alignment:
| Q |
361 |
tcaagttgcccttcttcgatcttgaccgttgaatatttaaataataaatcaatggtaaaatactcatttttgtatcatacacaaaaagatgaactatggt |
460 |
Q |
| |
|
|||||| ||||||||| ||||| ||| ||||||| || ||||||||||||||| ||||| |||||||||||||||||||||| |||||| ||| ||| |
|
|
| T |
22967732 |
tcaagtagcccttctttaatcttaaccattgaataatttaataataaatcaatgataaaaagctcatttttgtatcatacacaagaagatgcactttggc |
22967633 |
T |
|
| Q |
461 |
atcctaaatgccacc |
475 |
Q |
| |
|
|| ||| |||||||| |
|
|
| T |
22967632 |
atgctagatgccacc |
22967618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 361 - 475
Target Start/End: Original strand, 23820661 - 23820775
Alignment:
| Q |
361 |
tcaagttgcccttcttcgatcttgaccgttgaatatttaaataataaatcaatggtaaaatactcatttttgtatcatacacaaaaagatgaactatggt |
460 |
Q |
| |
|
|||||| ||||||||| ||||| ||| ||||||| || ||||||||||||||| ||||| |||||||||||||||||||||| |||||| ||| ||| |
|
|
| T |
23820661 |
tcaagtagcccttctttaatcttaaccattgaataatttaataataaatcaatgataaaaagctcatttttgtatcatacacaagaagatgcactttggc |
23820760 |
T |
|
| Q |
461 |
atcctaaatgccacc |
475 |
Q |
| |
|
|| ||| |||||||| |
|
|
| T |
23820761 |
atgctagatgccacc |
23820775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 321 - 477
Target Start/End: Complemental strand, 1376204 - 1376048
Alignment:
| Q |
321 |
tctttttgaaaatatcaaactataacatcaaacctactactcaagttgcccttcttcgatcttgaccgttgaatatttaaataataaatcaatggtaaaa |
420 |
Q |
| |
|
|||| ||||||||| |||| ||||||| |||||| ||| |||||| ||||||||| ||||| ||| ||||||| || ||||||||||||||||||||| |
|
|
| T |
1376204 |
tcttgttgaaaataccaaattataacaaaaaacctgctattcaagtagcccttctttaatcttaaccattgaatagtttaataataaatcaatggtaaaa |
1376105 |
T |
|
| Q |
421 |
tactcatttttgtatcatacacaaaaagatgaactatggtatcctaaatgccaccta |
477 |
Q |
| |
|
||||||||||| | ||||||||| || ||| ||| | | || ||| |||||||||| |
|
|
| T |
1376104 |
aactcatttttgcaccatacacaagaatatgcacttttgcatgctagatgccaccta |
1376048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 41234867 - 41234955
Alignment:
| Q |
389 |
ttgaatatttaaataataaatcaatggtaaaatactcatttttgtatcatacacaaaaagatgaactatggtatcctaaatgccaccta |
477 |
Q |
| |
|
|||||| ||| ||||||| ||||||||| ||| ||||| |||||||| |||| |||||| ||||||| |||| |||||||||||||| |
|
|
| T |
41234867 |
ttgaattttttaataatatatcaatggtgaaaaactcacttttgtatgatacccaaaaacatgaacttgtgtatactaaatgccaccta |
41234955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 450
Target Start/End: Original strand, 40863451 - 40863529
Alignment:
| Q |
372 |
ttcttcgatcttgaccgttgaatatttaaataataaatcaatggtaaaatactcatttttgtatcatacacaaaaagat |
450 |
Q |
| |
|
|||||| ||||||||| |||||| || |||| || ||||||||| ||| || ||| | |||||||||||||||||||| |
|
|
| T |
40863451 |
ttcttcaatcttgaccattgaattatttaatattatatcaatggttaaaaacacatctgtgtatcatacacaaaaagat |
40863529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 448
Target Start/End: Original strand, 13463910 - 13463986
Alignment:
| Q |
372 |
ttcttcgatcttgaccgttgaatatttaaataataaatcaatggtaaaatactcatttttgtatcatacacaaaaag |
448 |
Q |
| |
|
|||||| |||||| || |||||| || |||| || ||||||||| ||| || ||||||||||| |||||||||||| |
|
|
| T |
13463910 |
ttcttcaatcttggccattgaattgtttaatattatatcaatggtgaaaaacacatttttgtatgatacacaaaaag |
13463986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 300 - 355
Target Start/End: Original strand, 54154450 - 54154506
Alignment:
| Q |
300 |
aattgcattattattaaagattctttttgaaaatatc-aaactataacatcaaacct |
355 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||||||| | ||||||||||| ||||||| |
|
|
| T |
54154450 |
aattgcattattgttaaagactcttcttgaaaataccaaaactataacaacaaacct |
54154506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 449
Target Start/End: Complemental strand, 9464792 - 9464745
Alignment:
| Q |
402 |
taataaatcaatggtaaaatactcatttttgtatcatacacaaaaaga |
449 |
Q |
| |
|
||||| ||||||||| ||| |||||||||||||| ||||||||||||| |
|
|
| T |
9464792 |
taatatatcaatggtgaaaaactcatttttgtatgatacacaaaaaga |
9464745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Complemental strand, 37698199 - 37698162
Alignment:
| Q |
411 |
aatggtaaaatactcatttttgtatcatacacaaaaag |
448 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
37698199 |
aatggtaaaaaactcatttttgtatgatacacaaaaag |
37698162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 415
Target Start/End: Original strand, 5064597 - 5064633
Alignment:
| Q |
379 |
atcttgaccgttgaatatttaaataataaatcaatgg |
415 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
5064597 |
atcttgaccgttgaatatttatataataaatctatgg |
5064633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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