View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15073_low_4 (Length: 450)

Name: NF15073_low_4
Description: NF15073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15073_low_4
NF15073_low_4
[»] chr6 (18 HSPs)
chr6 (111-434)||(32821615-32821938)
chr6 (16-83)||(32821529-32821596)
chr6 (289-424)||(14270663-14270798)
chr6 (298-407)||(34913449-34913558)
chr6 (298-432)||(34006502-34006637)
chr6 (296-427)||(5989035-5989166)
chr6 (288-432)||(21631170-21631317)
chr6 (296-432)||(3539045-3539182)
chr6 (296-432)||(24878863-24879000)
chr6 (296-432)||(26515455-26515592)
chr6 (296-432)||(14479558-14479695)
chr6 (296-432)||(24161282-24161419)
chr6 (296-432)||(32806789-32806926)
chr6 (288-431)||(1454786-1454929)
chr6 (288-431)||(1466478-1466621)
chr6 (286-431)||(25976940-25977082)
chr6 (367-430)||(21596556-21596620)
chr6 (296-432)||(9932832-9932969)
[»] chr1 (17 HSPs)
chr1 (298-431)||(8996290-8996423)
chr1 (295-432)||(11738824-11738962)
chr1 (296-432)||(13218072-13218209)
chr1 (287-427)||(9667727-9667870)
chr1 (269-432)||(15161074-15161237)
chr1 (296-432)||(16129657-16129794)
chr1 (296-432)||(38121959-38122096)
chr1 (296-432)||(39001208-39001345)
chr1 (296-430)||(44505299-44505434)
chr1 (296-428)||(432371-432504)
chr1 (296-432)||(12168243-12168380)
chr1 (296-432)||(33492225-33492362)
chr1 (296-432)||(41000130-41000267)
chr1 (296-432)||(49249070-49249207)
chr1 (285-332)||(36080207-36080254)
chr1 (338-432)||(16130253-16130348)
chr1 (296-432)||(16832809-16832946)
[»] chr7 (20 HSPs)
chr7 (287-431)||(3544908-3545055)
chr7 (286-432)||(22909108-22909252)
chr7 (296-431)||(2477656-2477792)
chr7 (331-431)||(24482777-24482878)
chr7 (285-431)||(1274577-1274721)
chr7 (296-433)||(12183864-12184002)
chr7 (298-431)||(19063514-19063647)
chr7 (296-432)||(19472290-19472427)
chr7 (296-432)||(22321827-22321964)
chr7 (296-430)||(12090489-12090624)
chr7 (296-432)||(8107915-8108052)
chr7 (296-432)||(10346332-10346469)
chr7 (296-432)||(12190841-12190978)
chr7 (296-432)||(1953955-1954092)
chr7 (296-432)||(2631394-2631531)
chr7 (295-431)||(2797591-2797728)
chr7 (296-428)||(22818410-22818543)
chr7 (296-432)||(31158303-31158440)
chr7 (296-432)||(31664521-31664658)
chr7 (384-432)||(19472216-19472264)
[»] chr3 (22 HSPs)
chr3 (296-431)||(33247986-33248122)
chr3 (296-428)||(20837092-20837225)
chr3 (295-432)||(45527644-45527782)
chr3 (296-432)||(3588398-3588535)
chr3 (296-432)||(27030710-27030847)
chr3 (309-432)||(36469462-36469586)
chr3 (289-431)||(1232519-1232666)
chr3 (296-432)||(7653249-7653386)
chr3 (296-432)||(8615501-8615638)
chr3 (296-432)||(9989394-9989531)
chr3 (296-432)||(10386097-10386234)
chr3 (296-432)||(22097665-22097802)
chr3 (290-427)||(49434089-49434226)
chr3 (309-428)||(27850581-27850701)
chr3 (289-350)||(2357152-2357212)
chr3 (337-432)||(4743027-4743123)
chr3 (389-431)||(26335198-26335240)
chr3 (296-432)||(37471713-37471850)
chr3 (144-173)||(2356973-2357002)
chr3 (399-432)||(48168220-48168253)
chr3 (285-431)||(23193910-23194056)
chr3 (384-432)||(52308112-52308160)
[»] chr8 (21 HSPs)
chr8 (286-431)||(13509954-13510097)
chr8 (286-431)||(13599484-13599627)
chr8 (298-431)||(22233879-22234012)
chr8 (298-431)||(22243272-22243406)
chr8 (298-431)||(22222693-22222828)
chr8 (298-431)||(22229035-22229170)
chr8 (296-431)||(16958548-16958684)
chr8 (296-432)||(22180599-22180736)
chr8 (291-432)||(11309014-11309156)
chr8 (296-432)||(8743310-8743447)
chr8 (296-432)||(9068194-9068331)
chr8 (296-432)||(16580083-16580220)
chr8 (296-432)||(28926170-28926307)
chr8 (296-432)||(41577358-41577495)
chr8 (285-431)||(17992881-17993028)
chr8 (296-432)||(3298800-3298937)
chr8 (296-432)||(24040714-24040851)
chr8 (296-432)||(27348024-27348161)
chr8 (296-432)||(28370091-28370228)
chr8 (285-432)||(4861977-4862125)
chr8 (389-432)||(34006798-34006841)
[»] scaffold1832 (1 HSPs)
scaffold1832 (287-428)||(1-145)
[»] scaffold0298 (2 HSPs)
scaffold0298 (286-414)||(12247-12373)
scaffold0298 (286-414)||(16017-16143)
[»] scaffold0124 (1 HSPs)
scaffold0124 (286-414)||(12185-12311)
[»] chr2 (16 HSPs)
chr2 (287-431)||(28457905-28458052)
chr2 (296-431)||(36557550-36557686)
chr2 (296-432)||(36040289-36040426)
chr2 (296-431)||(36667897-36668033)
chr2 (296-432)||(42702233-42702370)
chr2 (291-432)||(13230368-13230510)
chr2 (296-432)||(29223713-29223850)
chr2 (296-432)||(29337012-29337149)
chr2 (308-431)||(21159976-21160099)
chr2 (334-432)||(27257421-27257520)
chr2 (296-432)||(5784551-5784688)
chr2 (296-432)||(23925058-23925195)
chr2 (285-350)||(492726-492790)
chr2 (296-424)||(32522927-32523056)
chr2 (318-432)||(43991552-43991660)
chr2 (291-350)||(8687783-8687842)
[»] scaffold0147 (1 HSPs)
scaffold0147 (296-428)||(6730-6863)
[»] scaffold0091 (1 HSPs)
scaffold0091 (287-431)||(14176-14318)
[»] scaffold0019 (1 HSPs)
scaffold0019 (296-432)||(116594-116731)
[»] chr5 (16 HSPs)
chr5 (296-432)||(27167124-27167261)
chr5 (287-431)||(34869774-34869921)
chr5 (296-432)||(7314963-7315100)
chr5 (296-432)||(9404422-9404559)
chr5 (296-432)||(11723303-11723440)
chr5 (296-432)||(11766753-11766890)
chr5 (296-432)||(34456295-34456432)
chr5 (296-429)||(33434601-33434735)
chr5 (308-432)||(14344479-14344604)
chr5 (296-432)||(16904636-16904773)
chr5 (296-432)||(30607103-30607240)
chr5 (296-427)||(31845978-31846110)
chr5 (298-378)||(32226833-32226912)
chr5 (384-432)||(24835822-24835870)
chr5 (384-432)||(6269977-6270025)
chr5 (379-431)||(37251933-37251985)
[»] chr4 (19 HSPs)
chr4 (296-432)||(21677694-21677831)
chr4 (296-432)||(40995576-40995713)
chr4 (334-431)||(53895415-53895513)
chr4 (296-427)||(26069723-26069855)
chr4 (296-432)||(4839163-4839300)
chr4 (296-432)||(19247854-19247991)
chr4 (296-432)||(22047679-22047816)
chr4 (296-431)||(30218419-30218555)
chr4 (287-432)||(42532914-42533062)
chr4 (296-430)||(20948743-20948878)
chr4 (296-432)||(323436-323573)
chr4 (289-421)||(33110741-33110874)
chr4 (308-432)||(44432080-44432205)
chr4 (308-432)||(46692063-46692188)
chr4 (298-432)||(1187965-1188100)
chr4 (384-432)||(5273589-5273637)
chr4 (389-432)||(52618595-52618638)
chr4 (296-424)||(26373664-26373793)
chr4 (334-431)||(55326812-55326910)
[»] scaffold0159 (1 HSPs)
scaffold0159 (296-432)||(28926-29063)
[»] scaffold0505 (1 HSPs)
scaffold0505 (289-431)||(1012-1154)
[»] scaffold1494 (1 HSPs)
scaffold1494 (296-432)||(1562-1699)
[»] scaffold0336 (1 HSPs)
scaffold0336 (296-432)||(8740-8877)
[»] scaffold0076 (1 HSPs)
scaffold0076 (296-432)||(25677-25814)
[»] scaffold0014 (1 HSPs)
scaffold0014 (296-432)||(76478-76615)
[»] scaffold0160 (1 HSPs)
scaffold0160 (285-359)||(35384-35456)


Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 111 - 434
Target Start/End: Original strand, 32821615 - 32821938
Alignment:
Q  111 aaatgggcctttgacccaattgggtattggttaacccgagagttacaaagaaggaggtcttgcnnnnnnnggaggaggtataacacgttttggaataaag 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||| ||||||||| ||||||||||||||    
T  32821615 aaatgggcctttgacccaattgggtattggttaacccgagagttacaaagaaggaggtcttgcaaaaaaaggaggtggtataacaggttttggaataaag 32821714  T
Q  211 agcagtatcactgtttcggcagaaaggagatccatgaggttttggaataagaaagagtagcacactttttagaaatggcatttctagagagaaatataaa 310  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  32821715 agcagtatcactgtttcggcagaaaggagatctatgaggttttggaataagaaagagtagcacactttttagaaatggcatttcaagatagaaatataaa 32821814  T
Q  311 gcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcctttttaaagctatcat 409  Q
    ||||||| |||||||||||||| ||||||||||||||||| |||| |||||| || |||||||||||| ||||||||||||||||||| |||||||||||    
T  32821815 gcaaggtattaggaatagattc-aacccaagatttgttgataaatcatggatctatgcattgaatcttcatctcttctccatccttttaaaagctatcat 32821913  T
Q  410 agacaaatgtagctacatctacttg 434  Q
    |||||||||||||||||||||||||    
T  32821914 agacaaatgtagctacatctacttg 32821938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 32821529 - 32821596
Alignment:
Q  16 tgctgaacagtaatggtaaaattgcaatagcatggtttaattagcaaatacatgtgttttggaattat 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32821529 tgctgaacagtaatggtaaaattgcaatagcatggtttaattagcaaatacatgtgttttggaattat 32821596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 289 - 424
Target Start/End: Original strand, 14270663 - 14270798
Alignment:
Q  289 catttctagagagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttct 387  Q
    |||||||||||||||| | ||||||||||||||||| ||||||| ||||||||||||||||| | || || ||| |||||| |||||||| |||| ||||    
T  14270663 catttctagagagaaacacaaagcaaggtgttaggagtagattc-aacccaagatttgttgagacatcatagatctaggcagtgaatcttcatcttttct 14270761  T
Q  388 ccatcctttttaaagctatcatagacaaatgtagcta 424  Q
     |||| |||  ||| |||||||||||| |||||||||    
T  14270762 tcatcttttgcaaaactatcatagacatatgtagcta 14270798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 407
Target Start/End: Original strand, 34913449 - 34913558
Alignment:
Q  298 agagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatccttt 396  Q
    ||||||| | ||||||||||||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||||  |||||| |    
T  34913449 agagaaacacaaagcaaggtgttaggagtagattcaa-cccaagatttgttgagacattatggatttaggcattgaatcttcatctcttcatcatcctat 34913547  T
Q  397 ttaaagctatc 407  Q
      |||||||||    
T  34913548 gcaaagctatc 34913558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 298 - 432
Target Start/End: Original strand, 34006502 - 34006637
Alignment:
Q  298 agagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcctt 395  Q
    ||||||| | |||||||||| ||||||| |||||||||||| |||||||||||| | || |||||| | | ||| ||||||| |||| |||| |||||||    
T  34006502 agagaaacacaaagcaaggtagttaggagtagattcaaacc-aagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatcctt 34006600  T
Q  396 tttaaagctatcatagacaaatgtagctacatctact 432  Q
    |  |||||||||||||||| |||||||||||||||||    
T  34006601 tgcaaagctatcatagacatatgtagctacatctact 34006637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 427
Target Start/End: Complemental strand, 5989166 - 5989035
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| ||||||||||||||| | || |||||| ||||||||||||||| |||| || | ||||     
T  5989166 agagagaaacacaaagcaaggtagttaggagtagattcaa-cccaagatttgttgagacatcatggatctaggcattgaatcttcatct-tttttcatca 5989069  T
Q  394 tttttaaagctatcatagacaaatgtagctacat 427  Q
    |||  |||||||||||||||| ||||||||||||    
T  5989068 tttgcaaagctatcatagacatatgtagctacat 5989035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 432
Target Start/End: Original strand, 21631170 - 21631317
Alignment:
Q  288 gcatttctagagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctctt 385  Q
    |||||| |||||||||| |||||||||||| |||| || |||||| || | ||||||||||||| | || |||||| ||| ||| ||||||| |||||||    
T  21631170 gcatttttagagagaaacataaagcaaggtagttaagagtagatttaa-cacaagatttgttgagacatcatggatctagacatagaatcttcatctctt 21631268  T
Q  386 ctc--catcctttttaaagctatcatagacaaatgtagctacatctact 432  Q
     ||  |||||||| ||||||||||||||||| |||||| ||||||||||    
T  21631269 ttcttcatcctttgtaaagctatcatagacatatgtagttacatctact 21631317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 3539045 - 3539182
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  3539045 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 3539143  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  3539144 tttgcaaagctatcatagacatatgtagctacatctact 3539182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 24878863 - 24879000
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | ||| |||||| ||||||| ||||||||| |||||||||  |||| | || ||| || ||||||| ||||||| |||| |||| |||||    
T  24878863 agagagaaacacaaaacaaggtagttaggagtagattcaa-cccaagattcattgagacatcatgaatctaggcatggaatcttcatcttttcttcatcc 24878961  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||| ||||    
T  24878962 tttgcaaagctatcatagacatatgtagctacatatact 24879000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 26515592 - 26515455
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  26515592 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 26515494  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  26515493 tttgcaaagctatcatagacatatgtagctacatctact 26515455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 14479558 - 14479695
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || ||| || | | ||| ||||||| |||| |||| |||||    
T  14479558 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatgaatcttgtcatggaatcttcatcttttcttcatcc 14479656  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  ||| |||||||||||| ||||||||| |||||||    
T  14479657 tttgcaaatctatcatagacatatgtagctatatctact 14479695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 24161419 - 24161282
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| |  |||||||||||| | || |||||| | | ||| ||||||| |||| |||| ||| |    
T  24161419 agagagaaacacaaagcaaggtagttaggagtagattcaagca-aagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcattc 24161321  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    ||   |||||||||||||||| |||||||||||||||||    
T  24161320 ttggcaaagctatcatagacatatgtagctacatctact 24161282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 32806926 - 32806789
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | |||  |||||| |||| |||| |||||    
T  32806926 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatgaaatcttcatcttttcttcatcc 32806828  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| ||||| ||||| |||||    
T  32806827 tttgcaaagctatcatagacatatgtatctacacctact 32806789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 431
Target Start/End: Original strand, 1454786 - 1454929
Alignment:
Q  288 gcatttctagagagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttc 386  Q
    ||||||||| ||||||| | ||||||||||||||||| |||||||  |||||||||||||||| | || |||  | ||||||| ||||||| |||| |      
T  1454786 gcatttctatagagaaacacaaagcaaggtgttaggagtagattc-tacccaagatttgttgagacatcatgagtctaggcatggaatcttcatctttct 1454884  T
Q  387 tccatcctttttaaagctatcatagacaaatgtagctacatctac 431  Q
    | ||||||||   |||||  |||||||| ||||| ||||||||||    
T  1454885 ttcatcctttgccaagcttgcatagacatatgtaactacatctac 1454929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 431
Target Start/End: Original strand, 1466478 - 1466621
Alignment:
Q  288 gcatttctagagagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttc 386  Q
    ||||||||| ||||||| | ||||||||||||||||| |||||||  |||||||||||||||| | || |||  | ||||||| ||||||| |||| |      
T  1466478 gcatttctatagagaaacacaaagcaaggtgttaggagtagattc-tacccaagatttgttgagacatcatgagtctaggcatggaatcttcatctttct 1466576  T
Q  387 tccatcctttttaaagctatcatagacaaatgtagctacatctac 431  Q
    | ||||||||   |||||  |||||||| ||||| ||||||||||    
T  1466577 ttcatcctttgccaagcttgcatagacatatgtaactacatctac 1466621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 431
Target Start/End: Original strand, 25976940 - 25977082
Alignment:
Q  286 tggcatttctagagagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctct 384  Q
    |||||||||||||||  || | ||||||||||||||||| ||||||||| |||||||||  |||| | || ||| || | |  || ||||||| |||| |    
T  25976940 tggcatttctagaga--aacacaaagcaaggtgttaggagtagattcaa-cccaagattcattgagacatcatgaatcttgttatggaatcttcatcttt 25977036  T
Q  385 tctccatcctttttaaagctatcatagacaaatgtagctacatctac 431  Q
    ||| |||| |||  |||||||||||||||| ||||||||||||||||    
T  25977037 tcttcatc-tttgcaaagctatcatagacatatgtagctacatctac 25977082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 430
Target Start/End: Complemental strand, 21596620 - 21596556
Alignment:
Q  367 gcattgaatctt-atctcttctccatcctttttaaagctatcatagacaaatgtagctacatcta 430  Q
    |||| ||||||| |||| |||| ||||||||  |||||||||||||||| |||||||||||||||    
T  21596620 gcatggaatcttcatcttttcttcatcctttgcaaagctatcatagacatatgtagctacatcta 21596556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 9932969 - 9932832
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | ||| |||||| ||||||| |||||||||  | |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  9932969 agagagaaacacaaaacaaggtagttaggagtagattcaaggc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 9932871  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||| ||| |||||||||||||||||    
T  9932870 tttgcaaagctatcatatacatatgtagctacatctact 9932832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 298 - 431
Target Start/End: Complemental strand, 8996423 - 8996290
Alignment:
Q  298 agagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatccttt 396  Q
    ||||||| | ||||||||||||||||| ||||||||| ||||||||||||||  | || |||||| ||||||||||||||| ||||||||| ||||||||    
T  8996423 agagaaacacaaagcaaggtgttaggagtagattcaa-cccaagatttgttgcgacatcatggatctaggcattgaatcttcatctcttcttcatccttt 8996325  T
Q  397 ttaaagctatcatagacaaatgtagctacatctac 431  Q
      |||||||||||||||| ||||||||||||||||    
T  8996324 gcaaagctatcatagacatatgtagctacatctac 8996290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 432
Target Start/End: Complemental strand, 11738962 - 11738824
Alignment:
Q  295 tagagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatc 392  Q
    |||||||||| | |||||||||| ||||||| || |||||| || |||||||||||||| || |||||| | | ||| ||||||| |||| |||| ||||    
T  11738962 tagagagaaacacaaagcaaggtagttaggagtaaattcaagcc-aagatttgttgacacatcatggatcttgtcatggaatcttcatcttttcttcatc 11738864  T
Q  393 ctttttaaagctatcatagacaaatgtagctacatctact 432  Q
    ||||  |||||||||||||||| |||||||||||||||||    
T  11738863 ctttgcaaagctatcatagacatatgtagctacatctact 11738824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 13218209 - 13218072
Alignment:
Q  296 agagagaaatataaagcaaggtg-ttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | ||||||||||| |||||| ||||||||| || |||||||||||| | || |||||  | | ||| ||||||| |||| |||| |||||    
T  13218209 agagagaaacacaaagcaaggtggttaggagtagattcaagcc-aagatttgttgagacatcatggaacttgtcatggaatcttcatcttttcttcatcc 13218111  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  13218110 tttgcaaagctatcatagacatatgtagctacatctact 13218072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 427
Target Start/End: Complemental strand, 9667870 - 9667727
Alignment:
Q  287 ggcatttctaga--gagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atct 382  Q
    ||||||||||||  |||||||| || ||||||| ||||||| ||||||| || |||||||||||||| | || |||||| | | ||| ||||||| ||||    
T  9667870 ggcatttctagagagagaaatacaaggcaaggtagttaggagtagattc-aagccaagatttgttgagacatcatggatcttgtcatggaatcttcatct 9667772  T
Q  383 cttctccatcctttttaaagctatcatagacaaatgtagctacat 427  Q
     |||| ||||||||  |||||||||||||||| ||||||||||||    
T  9667771 tttcttcatcctttgcaaagctatcatagacatatgtagctacat 9667727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 269 - 432
Target Start/End: Original strand, 15161074 - 15161237
Alignment:
Q  269 agcacactttttagaaatggcatttctagagagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggc 368  Q
    |||||||||||| || |||||||||||||||||||| | |||||||| | |||||| |||||||   ||||||||||||||| | || ||| || |  ||    
T  15161074 agcacactttttggagatggcatttctagagagaaacacaaagcaagatattaggagtagattc-ttcccaagatttgttgagacatcatgaatcttagc 15161172  T
Q  369 attgaatctt-atctcttctccatcctttttaaagctatcatagacaaatgtagctacatctact 432  Q
     | ||||||| || | |||| |||||| |  |||||||||||||||| |||||| ||||||||||    
T  15161173 ttggaatcttcatattttcttcatcctctgcaaagctatcatagacatatgtagttacatctact 15161237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 16129657 - 16129794
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||| | ||||||| ||||||||| || |||||||||||| | || |||||| | | ||||||||||| || |||||| ||||     
T  16129657 agagagaaacacaaagcaagatagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcattgaatcttcatttcttcttcatca 16129755  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| ||||||||| |||||||    
T  16129756 tttgcaaagctatcatagacatatgtagctatatctact 16129794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 38122096 - 38121959
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  38122096 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 38121998  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  38121997 tttgcaaagctatcatagacatatgtagctacatctact 38121959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 39001345 - 39001208
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  39001345 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 39001247  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  39001246 tttgcaaagctatcatagacatatgtagctacatctact 39001208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 430
Target Start/End: Complemental strand, 44505434 - 44505299
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || || ||||||||| | || ||||||   | ||| ||||||| |||| |||| |||||    
T  44505434 agagagaaacacaaagcaaggtagttaggagtagattcaagccaaa-atttgttgagacatcatggatcatgtcatggaatcttcatcttttcttcatcc 44505336  T
Q  394 tttttaaagctatcatagacaaatgtagctacatcta 430  Q
    |||  |||||||||||||||| |||||||||||||||    
T  44505335 tttgcaaagctatcatagacatatgtagctacatcta 44505299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 428
Target Start/End: Complemental strand, 432504 - 432371
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||||| || ||||||| ||||||| |||| |||| || |||||||||||| | || ||| || | | ||| ||||||| |||| |||| |||||    
T  432504 agagagaaatacaaggcaaggtagttaggagtagactcaagcc-aagatttgttgagacatcatgaatcttgtcatggaatcttcatcttttcttcatcc 432406  T
Q  394 tttttaaagctatcatagacaaatgtagctacatc 428  Q
    |||  |||||||||||||||| |||||||||||||    
T  432405 tttgcaaagctatcatagacatatgtagctacatc 432371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 12168380 - 12168243
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||  ||||||||| || |||||||||||| | || |||||| | | ||| ||||||| | |  |||| |||||    
T  12168380 agagagaaacacaaagcaaggtagttaggtgtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccatttcttcatcc 12168282  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  12168281 tttgcaaagctatcatagacatatgtagctacatctact 12168243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 33492362 - 33492225
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  33492362 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 33492264  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| ||||||| |||||||||    
T  33492263 tttgcaaagctatcatagacatatgtagccacatctact 33492225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 41000267 - 41000130
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||||||||||| || |||||  |||||    
T  41000267 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcattgaatcttcatttcttcctcatcc 41000169  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  ||| |||||||||||| |||||| || |||||||    
T  41000168 tttgcaaatctatcatagacatatgtagttatatctact 41000130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 49249070 - 49249207
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||| ||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  49249070 agagagaaacacaaagtaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 49249168  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  49249169 tttgcaaagctatcatagacatatgtagctacatctact 49249207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 36080207 - 36080254
Alignment:
Q  285 atggcatttctagagagaaatataaagcaaggtgttaggaatagattc 332  Q
    |||||||||||||||||||| | ||||||||||||||||| |||||||    
T  36080207 atggcatttctagagagaaacacaaagcaaggtgttaggagtagattc 36080254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 16130253 - 16130348
Alignment:
Q  338 caagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcctttttaaagctatcatagacaaatgtagctacatctact 432  Q
    ||||||||||||| | || |||||| | | ||||||||||| || |||||| |||| |||  |||| ||||||||||| ||||||||| |||||||    
T  16130253 caagatttgttgagacatcatggatcttgtcattgaatcttcatttcttcttcatcatttgcaaagttatcatagacatatgtagctatatctact 16130348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 16832946 - 16832809
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||| ||||| ||||||| ||||||||| || |||||||||||| | || |||||| |   |||  |||||| |||| |||| |||||    
T  16832946 agagagaaacacaaagtaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttatcatgaaatcttcatcttttcttcatcc 16832848  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||| | ||||||||| |||||||    
T  16832847 tttgcaaagctatcatagatatatgtagctatatctact 16832809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 287 - 431
Target Start/End: Complemental strand, 3545055 - 3544908
Alignment:
Q  287 ggcatttctaga--gagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atct 382  Q
    ||||||||||||  |||||| | |||| ||||| ||||||| ||||||| ||||||||||||||||| | || |||||| |||||||| |||||| ||||    
T  3545055 ggcatttctagagagagaaacaaaaagaaaggtagttaggagtagattc-aacccaagatttgttgagacatcatggatctaggcattaaatcttcatct 3544957  T
Q  383 cttctccatcctttttaaagctatcatagacaaatgtagctacatctac 431  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  3544956 cttctccatcctttgcaaagctatcatagacatatgtagctacatctac 3544908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 286 - 432
Target Start/End: Original strand, 22909108 - 22909252
Alignment:
Q  286 tggcatttctagagagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctct 384  Q
    |||||||||||||||  || | ||||||||||||||||| ||||||||| |  |||||||||||| | || |||||| ||| ||||||||||| |||| |    
T  22909108 tggcatttctagaga--aacacaaagcaaggtgttaggagtagattcaatct-aagatttgttgagacatcatggatctagtcattgaatcttcatcttt 22909204  T
Q  385 tctccatcctttttaaagctatcatagacaaatgtagctacatctact 432  Q
    ||| ||||||||  |||||||||||||||| |||||||||||||||||    
T  22909205 tcttcatcctttgcaaagctatcatagacatatgtagctacatctact 22909252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 431
Target Start/End: Original strand, 2477656 - 2477792
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| ||||||||||||||| | || |||||| ||||||||||||||| |||| |||  |||||    
T  2477656 agagagaaacacaaagcaaggtagttaggagtagattcaa-cccaagatttgttgagacatcatggatctaggcattgaatcttcatcttttcctcatcc 2477754  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctac 431  Q
    |||  |||||||||||||||| |||||||| |||||||    
T  2477755 tttgcaaagctatcatagacatatgtagctccatctac 2477792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 331 - 431
Target Start/End: Original strand, 24482777 - 24482878
Alignment:
Q  331 tcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcctttttaaagctatcatagacaaatgtagctacatct 429  Q
    |||||||||||||||||||| | || |||||| ||| ||||||||||| ||||||||| ||||||||  |||||||||||||||| ||||||||||||||    
T  24482777 tcaaacccaagatttgttgagacatcatggatctagacattgaatcttcatctcttcttcatcctttgcaaagctatcatagacatatgtagctacatct 24482876  T
Q  430 ac 431  Q
    ||    
T  24482877 ac 24482878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 285 - 431
Target Start/End: Original strand, 1274577 - 1274721
Alignment:
Q  285 atggcatttctagagagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctc 383  Q
    ||||||||||||||||  || | |||| ||||||||| || |||||| || | ||||||||||||| | || |||||| | ||||||||||||| |||||    
T  1274577 atggcatttctagaga--aacacaaagtaaggtgttatgagtagatttaa-ctcaagatttgttgagacatcatggatctcggcattgaatctttatctc 1274673  T
Q  384 ttctccatcctttttaaagctatcatagacaaatgtagctacatctac 431  Q
    |||| |||||| |  |||||||||||||||| ||||||||||||||||    
T  1274674 ttcttcatcctatgcaaagctatcatagacatatgtagctacatctac 1274721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 296 - 433
Target Start/End: Original strand, 12183864 - 12184002
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || || ||| | | ||| ||||||| |||| |||| |||||    
T  12183864 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatagatcttgtcatggaatcttcatcttttcttcatcc 12183962  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctactt 433  Q
    |||  |||||||||||||||| ||||||||||||||||||    
T  12183963 tttgcaaagctatcatagacatatgtagctacatctactt 12184002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 431
Target Start/End: Original strand, 19063514 - 19063647
Alignment:
Q  298 agagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatccttt 396  Q
    ||||||| | |||| |||||||||||| ||||||||| || || ||||||||| | || |||||| || |||||||||||| ||||||||| ||| || |    
T  19063514 agagaaacacaaagtaaggtgttaggagtagattcaa-cctaaaatttgttgagacatcatggatctaagcattgaatcttcatctcttcttcattctat 19063612  T
Q  397 ttaaagctatcatagacaaatgtagctacatctac 431  Q
     ||||||||||||||||| |||||| || ||||||    
T  19063613 gtaaagctatcatagacatatgtagttatatctac 19063647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 19472427 - 19472290
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | | | ||||||| |||  |||| |||||    
T  19472427 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcttggaatcttcatcctttctgcatcc 19472329  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    ||| ||||||||||||||||| |||||||||||||||||    
T  19472328 tttgtaaagctatcatagacatatgtagctacatctact 19472290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 22321964 - 22321827
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||||| |||||||| | ||||||| ||||||||| || |||||||||||| | || |||||| |   ||||||||||| |||  |||| |||||    
T  22321964 agagagaaatacaaagcaagttagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttttcattgaatcttcatcctttcttcatcc 22321866  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  22321865 tttgcaaagctatcatagacatatgtagctacatctact 22321827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 430
Target Start/End: Complemental strand, 12090624 - 12090489
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| || |||||| || |||||||||||| | || |||||| | | ||| ||||||| |||| |||| |||||    
T  12090624 agagagaaacacaaagcaaggtagttaggagtaaattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatcc 12090526  T
Q  394 tttttaaagctatcatagacaaatgtagctacatcta 430  Q
    |||  |||||||||||||||| |||||||||||||||    
T  12090525 tttgcaaagctatcatagacatatgtagctacatcta 12090489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 8108052 - 8107915
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  8108052 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 8107954  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  8107953 tttgcaaagctatcatagacatatgtagctacatctact 8107915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 10346469 - 10346332
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  10346469 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 10346371  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  10346370 tttgcaaagctatcatagacatatgtagctacatctact 10346332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 12190841 - 12190978
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| ||||||| |||| |||| |||||    
T  12190841 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatcc 12190939  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||  ||||||||||    
T  12190940 tttgcaaagctatcatagacatatgtatttacatctact 12190978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 1953955 - 1954092
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | ||||||| || ||||||| ||||||||| || |||||||||| | | || |||||| | | ||||||||||| |  |||||| |||||    
T  1953955 agagagaaacacaaagcaatgtagttaggagtagattcaagcc-aagatttgttaagacatcatggatcttgtcattgaatcttcaattcttcttcatcc 1954053  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| ||||||||| |||||||    
T  1954054 tttgaaaagctatcatagacatatgtagctatatctact 1954092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 2631394 - 2631531
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  2631394 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 2631492  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||| ||| |||||||||||||||||    
T  2631493 tttgcaaagctatcataaacatatgtagctacatctact 2631531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 295 - 431
Target Start/End: Complemental strand, 2797728 - 2797591
Alignment:
Q  295 tagagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatc 392  Q
    |||||||||| | ||| |||||| ||||||| ||||||||| |||||||||  |||| | || ||| || | | ||| ||||||| |||| |||| ||||    
T  2797728 tagagagaaacacaaaacaaggtagttaggagtagattcaa-cccaagattcattgagacatcatgaatcttgtcatggaatcttcatcttttcttcatc 2797630  T
Q  393 ctttttaaagctatcatagacaaatgtagctacatctac 431  Q
    ||||  |||||||||||||||| ||||||||||||||||    
T  2797629 ctttgcaaagctatcatagacatatgtagctacatctac 2797591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 428
Target Start/End: Original strand, 22818410 - 22818543
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||||| || ||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | |||  |||||| |||| |||| ||||     
T  22818410 agagagaaatacaaggcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatgaaatcttcatcttttcttcatca 22818508  T
Q  394 tttttaaagctatcatagacaaatgtagctacatc 428  Q
    |||  |||||||||||||||| |||||||||||||    
T  22818509 tttgcaaagctatcatagacatatgtagctacatc 22818543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 31158440 - 31158303
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || ||||||   | ||| |||||||  | ||| || |||||    
T  31158440 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcatgtcatggaatcttcaccctttcttcatcc 31158342  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  31158341 tttgcaaagctatcatagacatatgtagctacatctact 31158303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 31664658 - 31664521
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| ||||||| |||| ||||  ||||    
T  31664658 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttaatcc 31664560  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||| ||| || ||||||||||||||    
T  31664559 tttacaaagctatcataaacatatctagctacatctact 31664521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 432
Target Start/End: Complemental strand, 19472264 - 19472216
Alignment:
Q  384 ttctccatcctttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  19472264 ttcttcatcctttgtaaagctatcatagacatatgtagctacatctact 19472216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 296 - 431
Target Start/End: Original strand, 33247986 - 33248122
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| ||||||||||||||| | || ||| |||||||||||||||||| ||||||| | |||||    
T  33247986 agagagaaacacaaagcaaggtagttaggagtagattcaa-cccaagatttgttgagacatcatgaatttaggcattgaatcttcatctctttttcatcc 33248084  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctac 431  Q
    |||  |||||||||||||||| |||||||| |||||||    
T  33248085 tttgcaaagctatcatagacatatgtagctgcatctac 33248122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 428
Target Start/End: Original strand, 20837092 - 20837225
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||||| || ||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| ||||||| |||| |||| |||||    
T  20837092 agagagaaatacaaggcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatcc 20837190  T
Q  394 tttttaaagctatcatagacaaatgtagctacatc 428  Q
    |||  |||||||||||||||| |||||||||||||    
T  20837191 tttgcaaagctatcatagacatatgtagctacatc 20837225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 295 - 432
Target Start/End: Original strand, 45527644 - 45527782
Alignment:
Q  295 tagagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatc 392  Q
    |||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| ||||||| |||| |||  ||||    
T  45527644 tagagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcatcatc 45527742  T
Q  393 ctttttaaagctatcatagacaaatgtagctacatctact 432  Q
    ||||  |||||||||||||||| || ||||||||||||||    
T  45527743 ctttgcaaagctatcatagacatatctagctacatctact 45527782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 3588398 - 3588535
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  3588398 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 3588496  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  3588497 tttgcaaagctatcatagacatatgtagctacatctact 3588535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 27030847 - 27030710
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  27030847 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 27030749  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  27030748 tttgcaaagctatcatagacatatgtagctacatctact 27030710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 432
Target Start/End: Complemental strand, 36469586 - 36469462
Alignment:
Q  309 aagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcctttttaaagctat 406  Q
    ||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| ||||||| |||| |||| ||||||||  ||||||||    
T  36469586 aagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatagaatcttcatcttttcttcatcctttgcaaagctat 36469488  T
Q  407 catagacaaatgtagctacatctact 432  Q
    |||||||| ||||||||||| |||||    
T  36469487 catagacatatgtagctacaactact 36469462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 431
Target Start/End: Complemental strand, 1232666 - 1232519
Alignment:
Q  289 catttctagagagaaatataaagcaa-----ggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atct 382  Q
    |||||||||||||||| | |||||||     |||||||||| |||||||  | | |||||||||||| | || ||| || |||||||  |||||| ||||    
T  1232666 catttctagagagaaacacaaagcaaaataaggtgttaggagtagattcttatc-aagatttgttgagacatcatgaatctaggcatgaaatctttatct 1232568  T
Q  383 cttctccatcctttttaaagctatcatagacaaatgtagctacatctac 431  Q
    ||||| ||||||||  |||||||| ||||||| ||||||||||||||||    
T  1232567 cttcttcatcctttgcaaagctattatagacatatgtagctacatctac 1232519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 7653386 - 7653249
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  7653386 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 7653288  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  ||||||||| |||||| |||||||||||||||||    
T  7653287 tttgcaaagctatcttagacatatgtagctacatctact 7653249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 8615501 - 8615638
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| |   ||| |||||||  | ||| || |||||    
T  8615501 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttatcatggaatcttcaccctttcttcatcc 8615599  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  8615600 tttgcaaagctatcatagacatatgtagctacatctact 8615638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 9989394 - 9989531
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || || ||    
T  9989394 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatagaatcttcaccctttcttcaacc 9989492  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  9989493 tttgcaaagctatcatagacatatgtagctacatctact 9989531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 10386234 - 10386097
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||| | || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  10386234 agagagaaacacaaagcaaggtagttaggagtagattcgagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 10386136  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  10386135 tttgcaaagctatcatagacatatgtagctacatctact 10386097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 22097665 - 22097802
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||| ||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  22097665 agagagaaacacaaagtaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 22097763  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  22097764 tttgcaaagctatcatagacatatgtagctacatctact 22097802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 290 - 427
Target Start/End: Original strand, 49434089 - 49434226
Alignment:
Q  290 atttctagagagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatc-ttatctcttctc 388  Q
    ||||||||||||||| | ||||||||||||||||| |||||||  |||||||||||||||| | ||||||  |||||| ||  |||| |||||| |  |     
T  49434089 atttctagagagaaacacaaagcaaggtgttaggagtagattc-tacccaagatttgttgagatattatgagtttaggtatgtaatctttatctttcttt 49434187  T
Q  389 catcctttttaaagctatcatagacaaatgtagctacat 427  Q
    ||||||||   |||||  |||||||| ||||||||||||    
T  49434188 catcctttgccaagcttgcatagacatatgtagctacat 49434226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 27850701 - 27850581
Alignment:
Q  309 aagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcctttttaaagctat 406  Q
    ||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| ||||||| |||  |||| ||||||||  ||||||||    
T  27850701 aagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcatcatttcttcatcctttgcaaagctat 27850603  T
Q  407 catagacaaatgtagctacatc 428  Q
    |||||||| |||||||||||||    
T  27850602 catagacatatgtagctacatc 27850581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 2357152 - 2357212
Alignment:
Q  289 catttctagagagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttga 350  Q
    |||||||| ||||||| | |||||||| |||||||| ||||||||| |||||||||||||||    
T  2357152 catttctatagagaaacacaaagcaagatgttaggagtagattcaa-cccaagatttgttga 2357212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 432
Target Start/End: Complemental strand, 4743123 - 4743027
Alignment:
Q  337 ccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcctttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||||||||||||| | || |||||| | | |||  |||||| |||| |||| |||| |||  |||||||||||||||| |||||||||||||||||    
T  4743123 ccaagatttgttgagagatcatggatcttgtcatgaaatcttcatcttttcttcatcgtttgcaaagctatcatagacatatgtagctacatctact 4743027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 431
Target Start/End: Original strand, 26335198 - 26335240
Alignment:
Q  389 catcctttttaaagctatcatagacaaatgtagctacatctac 431  Q
    ||||||||  |||||||||||||||| ||||||||||||||||    
T  26335198 catcctttgcaaagctatcatagacatatgtagctacatctac 26335240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 37471850 - 37471713
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | ||||||| || ||||||| ||||||||| || || ||||||||| |    |||||| | | ||| ||||||| |||| |||| |||||    
T  37471850 agagagaaacacaaagcaaagtagttaggagtagattcaagccaaa-atttgttgagacgacatggatcttgtcatggaatcttcatcttttcttcatcc 37471752  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| ||||||||| |||||||    
T  37471751 tttgcaaagctatcatagacatatgtagctatatctact 37471713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 173
Target Start/End: Original strand, 2356973 - 2357002
Alignment:
Q  144 acccgagagttacaaagaaggaggtcttgc 173  Q
    ||||||||||||||||||||||||||||||    
T  2356973 acccgagagttacaaagaaggaggtcttgc 2357002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 432
Target Start/End: Complemental strand, 48168253 - 48168220
Alignment:
Q  399 aaagctatcatagacaaatgtagctacatctact 432  Q
    |||||||||||||||| |||||||||||||||||    
T  48168253 aaagctatcatagacatatgtagctacatctact 48168220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 431
Target Start/End: Original strand, 23193910 - 23194056
Alignment:
Q  285 atggcatttctagagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atct 382  Q
    ||||||||| |||||||||| | || ||||||| |||| || ||||||||| |||||||||  |||| | || ||| || | | ||| ||||||| ||||    
T  23193910 atggcatttttagagagaaacacaaggcaaggtagttaagagtagattcaa-cccaagattcattgagacatcatgaatcttgtcatggaatcttcatct 23194008  T
Q  383 cttctccatcctttttaaagctatcatagacaaatgtagctacatctac 431  Q
     |||| ||||||||  ||| |||||| ||||| ||||||||||||||||    
T  23194009 tttcttcatcctttgcaaa-ctatcagagacatatgtagctacatctac 23194056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 432
Target Start/End: Complemental strand, 52308160 - 52308112
Alignment:
Q  384 ttctccatcctttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||| ||||||||  ||||||||| |||||| |||||||||||||||||    
T  52308160 ttcttcatcctttgcaaagctatcttagacatatgtagctacatctact 52308112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 286 - 431
Target Start/End: Original strand, 13509954 - 13510097
Alignment:
Q  286 tggcatttctagagagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctct 384  Q
    |||||||||||||||  || | |||||||| |||||| | ||||||||| || |||||||||||| | || |||||| ||||||||||||||| |||| |    
T  13509954 tggcatttctagaga--aacacaaagcaagatgttagaagtagattcaa-cctaagatttgttgagacatcatggatctaggcattgaatcttcatcttt 13510050  T
Q  385 tctccatcctttttaaagctatcatagacaaatgtagctacatctac 431  Q
    ||| ||||||||  |||||||||||||||| ||||||||||||||||    
T  13510051 tcttcatcctttgcaaagctatcatagacatatgtagctacatctac 13510097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 286 - 431
Target Start/End: Original strand, 13599484 - 13599627
Alignment:
Q  286 tggcatttctagagagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctct 384  Q
    |||||||||||||||  || | |||||||| |||||| | ||||||||| || |||||||||||| | || |||||| ||||||||||||||| |||| |    
T  13599484 tggcatttctagaga--aacacaaagcaagatgttagaagtagattcaa-cctaagatttgttgagacatcatggatctaggcattgaatcttcatcttt 13599580  T
Q  385 tctccatcctttttaaagctatcatagacaaatgtagctacatctac 431  Q
    ||| ||||||||  |||||||||||||||| ||||||||||||||||    
T  13599581 tcttcatcctttgcaaagctatcatagacatatgtagctacatctac 13599627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 298 - 431
Target Start/End: Complemental strand, 22234012 - 22233879
Alignment:
Q  298 agagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatccttt 396  Q
    ||||||| | ||||||||||||||||| ||||||| | ||||||||||||||| | || ||| || ||||||| ||||||| |||| |||| ||||||||    
T  22234012 agagaaacacaaagcaaggtgttaggagtagattcta-cccaagatttgttgagacatcatgaatctaggcatggaatcttcatcttttcttcatccttt 22233914  T
Q  397 ttaaagctatcatagacaaatgtagctacatctac 431  Q
      |||||||||||||||| ||||||||||||||||    
T  22233913 gcaaagctatcatagacatatgtagctacatctac 22233879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 298 - 431
Target Start/End: Complemental strand, 22243406 - 22243272
Alignment:
Q  298 agagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcctt 395  Q
    ||||||| | ||| |||||| ||||| | ||||||||| ||||||||||||||| | || |||||| ||||||||||||||| |||| |||| |||||||    
T  22243406 agagaaacacaaaacaaggtagttagaagtagattcaa-cccaagatttgttgagacatcatggatctaggcattgaatcttcatcttttcttcatcctt 22243308  T
Q  396 tttaaagctatcatagacaaatgtagctacatctac 431  Q
    |  |||||||||||||||| ||||||||||||||||    
T  22243307 tgcaaagctatcatagacatatgtagctacatctac 22243272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 298 - 431
Target Start/End: Complemental strand, 22222828 - 22222693
Alignment:
Q  298 agagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctc--catcct 394  Q
    ||||||| | ||||||||||||||||| ||||||| | ||||||||||||||| | || ||| || ||||||| ||||||| ||||||| ||  ||||||    
T  22222828 agagaaacacaaagcaaggtgttaggagtagattcta-cccaagatttgttgagacatcatgaatctaggcatggaatcttcatctcttttcttcatcct 22222730  T
Q  395 ttttaaagctatcatagacaaatgtagctacatctac 431  Q
    ||  |||||||||||||||| ||||||||||||||||    
T  22222729 ttgcaaagctatcatagacatatgtagctacatctac 22222693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 298 - 431
Target Start/End: Complemental strand, 22229170 - 22229035
Alignment:
Q  298 agagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctc--catcct 394  Q
    ||||||| | ||||||||||||||||| ||||||| | ||||||||||||||| | || ||| || ||||||| ||||||| ||||||| ||  ||||||    
T  22229170 agagaaacacaaagcaaggtgttaggagtagattcta-cccaagatttgttgagacatcatgaatctaggcatggaatcttcatctcttttcttcatcct 22229072  T
Q  395 ttttaaagctatcatagacaaatgtagctacatctac 431  Q
    ||  |||||||||||||||| ||||||||||||||||    
T  22229071 ttgcaaagctatcatagacatatgtagctacatctac 22229035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 431
Target Start/End: Original strand, 16958548 - 16958684
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| |||| || ||||||||| ||||||||||||||| | || |||  | ||||||| ||||||| |||| |||| |||||    
T  16958548 agagagaaacacaaagcaaggtagttaagagtagattcaa-cccaagatttgttgagacatcatgagtctaggcatggaatcttcatcttttcttcatcc 16958646  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctac 431  Q
    |||  |||||||||||||||| ||||||||||||||||    
T  16958647 tttgcaaagctatcatagacatatgtagctacatctac 16958684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 22180599 - 22180736
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| ||||||| |||  |||| |||||    
T  22180599 agagagaaacaaaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcatcctttcttcatcc 22180697  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  22180698 tttgcaaagctatcatagacatatgtagctacatctact 22180736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 291 - 432
Target Start/End: Complemental strand, 11309156 - 11309014
Alignment:
Q  291 tttctagagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctc 388  Q
    |||||||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| ||||||   | ||| ||     
T  11309156 tttctagagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatctccaccctttctt 11309058  T
Q  389 catcctttttaaagctatcatagacaaatgtagctacatctact 432  Q
    ||||||||  |||||||||||||||| |||||||||||||||||    
T  11309057 catcctttgcaaagctatcatagacatatgtagctacatctact 11309014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 8743447 - 8743310
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  8743447 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 8743349  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  8743348 tttgcaaagctatcatagacatatgtagctacatctact 8743310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 9068331 - 9068194
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  9068331 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 9068233  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  9068232 tttgcaaagctatcatagacatatgtagctacatctact 9068194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 16580083 - 16580220
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  16580083 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 16580181  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  16580182 tttgcaaagctatcatagacatatgtagctacatctact 16580220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 28926307 - 28926170
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  28926307 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 28926209  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  28926208 tttgcaaagctatcatagacatatgtagctacatctact 28926170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 41577495 - 41577358
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  41577495 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 41577397  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  41577396 tttgcaaagctatcatagacatatgtagctacatctact 41577358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 431
Target Start/End: Original strand, 17992881 - 17993028
Alignment:
Q  285 atggcatttctagagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atct 382  Q
    |||||||||||||||||||| | || ||||||| |||| || ||||||||| || ||||||  |||| | || ||| || | | ||| ||||||| ||||    
T  17992881 atggcatttctagagagaaacacaaggcaaggtagttaagagtagattcaatcc-aagattcattgagacatcatgaatcttgtcatggaatcttcatct 17992979  T
Q  383 cttctccatcctttttaaagctatcatagacaaatgtagctacatctac 431  Q
     |||| ||||||||  |||||||||||||||| ||||||||||||||||    
T  17992980 tttcttcatcctttgcaaagctatcatagacatatgtagctacatctac 17993028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 3298800 - 3298937
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  3298800 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatagaatcttcaccctttcttcatcc 3298898  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
     ||  |||||||||||||||| |||||||||||||||||    
T  3298899 attgcaaagctatcatagacatatgtagctacatctact 3298937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 24040714 - 24040851
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| ||||| ||| || ||||| | ||||||||| || |||||||||||| | || |||||| | | ||||||||||| || |||||  |||||    
T  24040714 agagagaaacataaatcaatgtagttagaagtagattcaagcc-aagatttgttgagacatcatggatcttgtcattgaatcttcatttcttcctcatcc 24040812  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| ||||||||| |||||||    
T  24040813 tttgcaaagctatcatagacatatgtagctatatctact 24040851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 27348024 - 27348161
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  27348024 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 27348122  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||| ||||||||||| |||||||||||||||||    
T  27348123 tttgcaaagttatcatagacatatgtagctacatctact 27348161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 28370091 - 28370228
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  28370091 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 28370189  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||| ||||    
T  28370190 tttgcaaagctatcatagacatatgtagctacatttact 28370228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 432
Target Start/End: Complemental strand, 4862125 - 4861977
Alignment:
Q  285 atggcatttctagagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atct 382  Q
    ||||||||| |||||||||| | || | ||||| |||| || ||||||||| |||||||||  |||| | || ||| || | | ||| ||||||| ||||    
T  4862125 atggcatttttagagagaaacacaaggtaaggtagttaagagtagattcaa-cccaagattcattgagacatcatgaatcttgtcatggaatcttcatct 4862027  T
Q  383 cttctccatcctttttaaagctatcatagacaaatgtagctacatctact 432  Q
     |||| ||||||||  |||||||||||||||| |||||||||||||||||    
T  4862026 tttcttcatcctttgcaaagctatcatagacatatgtagctacatctact 4861977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 432
Target Start/End: Complemental strand, 34006841 - 34006798
Alignment:
Q  389 catcctttttaaagctatcatagacaaatgtagctacatctact 432  Q
    ||||||||  |||||||||||||||| |||||||||||||||||    
T  34006841 catcctttgcaaagctatcatagacatatgtagctacatctact 34006798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1832 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1832
Description:

Target: scaffold1832; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 287 - 428
Target Start/End: Complemental strand, 145 - 1
Alignment:
Q  287 ggcatttctaga--gagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atct 382  Q
    ||||||||||||  |||||| | |||||||||| ||| ||| ||||||| ||| ||||||||||||| | || |||||| |||||||||||||||  |||    
T  145 ggcatttctagagagagaaagacaaagcaaggtagttgggagtagattc-aacacaagatttgttgagacatcatggatctaggcattgaatcttcctct 47  T
Q  383 cttctccatcctttttaaagctatcatagacaaatgtagctacatc 428  Q
    ||||| ||||||||  |||||||||||||||| |||||||||||||    
T  46 cttcttcatcctttgcaaagctatcatagacatatgtagctacatc 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 286 - 414
Target Start/End: Complemental strand, 12373 - 12247
Alignment:
Q  286 tggcatttctagagagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctct 384  Q
    |||||||||||||||  || | ||||||||||||||||| ||||||| |||||||||||| |||| | || ||| || ||||||||||||||| ||||||    
T  12373 tggcatttctagaga--aacacaaagcaaggtgttaggagtagattc-aacccaagatttattgagacatcatgaatctaggcattgaatcttcatctct 12277  T
Q  385 tctccatcctttttaaagctatcatagaca 414  Q
    ||| ||||||||  ||||||||||||||||    
T  12276 tcttcatcctttgcaaagctatcatagaca 12247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 286 - 414
Target Start/End: Complemental strand, 16143 - 16017
Alignment:
Q  286 tggcatttctagagagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctct 384  Q
    |||||||||||||||  || | ||||||||||||||||| ||||||| |||||||||||| |||| | || ||| || ||||||||||||||| ||||||    
T  16143 tggcatttctagaga--aacacaaagcaaggtgttaggagtagattc-aacccaagatttattgagacatcatgaatctaggcattgaatcttcatctct 16047  T
Q  385 tctccatcctttttaaagctatcatagaca 414  Q
    ||| ||||||||  ||||||||||||||||    
T  16046 tcttcatcctttgcaaagctatcatagaca 16017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 286 - 414
Target Start/End: Original strand, 12185 - 12311
Alignment:
Q  286 tggcatttctagagagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctct 384  Q
    |||||||||||||||  || | ||||||||||||||||| ||||||| |||||||||||| |||| | || ||| || ||||||||||||||| ||||||    
T  12185 tggcatttctagaga--aacacaaagcaaggtgttaggagtagattc-aacccaagatttattgagacatcatgaatctaggcattgaatcttcatctct 12281  T
Q  385 tctccatcctttttaaagctatcatagaca 414  Q
    ||| ||||||||  ||||||||||||||||    
T  12282 tcttcatcctttgcaaagctatcatagaca 12311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 287 - 431
Target Start/End: Complemental strand, 28458052 - 28457905
Alignment:
Q  287 ggcatttctaga--gagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atct 382  Q
    ||||||||||||  |||||| | |||||||||| ||||||| ||||||| ||| ||||||||||| | | || |||||| ||||||||||||||| ||||    
T  28458052 ggcatttctagagagagaaacacaaagcaaggtagttaggagtagattc-aactcaagatttgttaagacatcatggatctaggcattgaatcttcatct 28457954  T
Q  383 cttctccatcctttttaaagctatcatagacaaatgtagctacatctac 431  Q
     |||| ||||||||  || ||||||||||||| ||||||||||||||||    
T  28457953 tttcttcatcctttgcaatgctatcatagacatatgtagctacatctac 28457905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 296 - 431
Target Start/End: Complemental strand, 36557686 - 36557550
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | | |||||||| ||||||| ||||||||| ||||||||||||||| | || |||||| |||||||| |||||| |||| |||| |||||    
T  36557686 agagagaaacacatagcaaggtagttaggagtagattcaa-cccaagatttgttgagacatcatggatctaggcatttaatcttcatcttttcttcatcc 36557588  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctac 431  Q
    |||  |||||||||||||||| |||||| |||||||||    
T  36557587 tttgcaaagctatcatagacatatgtaggtacatctac 36557550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 36040426 - 36040289
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| ||||||| |||| |||| |||||    
T  36040426 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatcc 36040328  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  36040327 tttgcaaagctatcatagacatatgtagctacatctact 36040289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 431
Target Start/End: Complemental strand, 36668033 - 36667897
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| |||| | || || |||||||||||| | || |||||| | | ||||||||||| ||||||||| |||||    
T  36668033 agagagaaacacaaagcaaggtagttaggagtagacttaagcc-aagatttgttgagacatcatggatcttgtcattgaatcttcatctcttcttcatcc 36667935  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctac 431  Q
    |||  |||||||||||||||| ||||||||||||||||    
T  36667934 tttgcaaagctatcatagacatatgtagctacatctac 36667897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 42702370 - 42702233
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| ||||||| |||| |||| | |||    
T  42702370 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcctcc 42702272  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  42702271 tttgcaaagctatcatagacatatgtagctacatctact 42702233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 291 - 432
Target Start/End: Complemental strand, 13230510 - 13230368
Alignment:
Q  291 tttctagagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctc 388  Q
    |||||||||||||| | |||||||||| |||| || ||||||||| |||||||||  |||| | || ||| || | | ||| ||||||| |||| ||||     
T  13230510 tttctagagagaaacacaaagcaaggtagttatgagtagattcaa-cccaagattcattgagacatcatgaatcttgtcatggaatcttcatcttttctt 13230412  T
Q  389 catcctttttaaagctatcatagacaaatgtagctacatctact 432  Q
    ||||||||  |||||||||||||||| |||||||||||||||||    
T  13230411 catcctttacaaagctatcatagacatatgtagctacatctact 13230368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 29223713 - 29223850
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  29223713 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 29223811  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  29223812 tttgcaaagctatcatagacatatgtagctacatctact 29223850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 29337012 - 29337149
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  29337012 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 29337110  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  29337111 tttgcaaagctatcatagacatatgtagctacatctact 29337149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 431
Target Start/End: Original strand, 21159976 - 21160099
Alignment:
Q  308 aaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcctttttaaagctat 406  Q
    |||| |||||||||||| |||||||  | | |||||||||||| | || ||| || |||||||  |||||| ||||||||| |||| |||  ||||||||    
T  21159976 aaagtaaggtgttaggagtagattcttatc-aagatttgttgagacatcatgaatctaggcatgaaatcttcatctcttcttcatcttttgcaaagctat 21160074  T
Q  407 catagacaaatgtagctacatctac 431  Q
    |||||||| ||||||||||||||||    
T  21160075 catagacatatgtagctacatctac 21160099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 432
Target Start/End: Original strand, 27257421 - 27257520
Alignment:
Q  334 aacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcctttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||||||||||  |||| | || ||| || ||||||| ||||||| |||| |||| ||||||||  |||||||||||||||| |||||||||||||||||    
T  27257421 aacccaagattcattgagacatcatgaatctaggcatggaatcttcatcttttcttcatcctttgcaaagctatcatagacatatgtagctacatctact 27257520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 5784688 - 5784551
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||  ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  5784688 agagagaaacacaaagcaaggaagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 5784590  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  5784589 tttgcaaagctatcatagacatatgtagctacatctact 5784551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 23925195 - 23925058
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| |  |||||||||||| | || ||||||   | ||| ||||||| |||| |||| |||||    
T  23925195 agagagaaacacaaagcaaggtagttaggagtagattcaagcg-aagatttgttgagacatcatggatcatgtcatggaatcttcatcttttcttcatcc 23925097  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| ||||| |||||||||||    
T  23925096 tttgcaaagctatcatagacatatgtatctacatctact 23925058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 492726 - 492790
Alignment:
Q  285 atggcatttctagagagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttga 350  Q
    |||||||||||||||||||| | ||| ||||||||||||| |||||||  ||||||||||||||||    
T  492726 atggcatttctagagagaaacacaaatcaaggtgttaggagtagattc-tacccaagatttgttga 492790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 424
Target Start/End: Original strand, 32522927 - 32523056
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || ||||||| |||| | || |||||| | | ||||||||||| || |||||| | |||    
T  32522927 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttattgagacatcatggatcttgtcattgaatcttcatttcttcttcgtcc 32523025  T
Q  394 tttttaaagctatcatagacaaatgtagcta 424  Q
    |||  ||||||||||| |||| |||||||||    
T  32523026 tttgcaaagctatcatggacatatgtagcta 32523056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 432
Target Start/End: Original strand, 43991552 - 43991660
Alignment:
Q  318 gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctcttctccatcctttttaaagctatcatagacaaat 417  Q
    ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||     |||| ||||||||  |||||||||||||||| ||    
T  43991552 gttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatctt-----ttcttcatcctttgcaaagctatcatagacatat 43991645  T
Q  418 gtagctacatctact 432  Q
    |||||||||||||||    
T  43991646 gtagctacatctact 43991660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 8687842 - 8687783
Alignment:
Q  291 tttctagagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttga 350  Q
    |||||||||||||| | |||||||||| ||||||| ||||||| || ||||||||||||||    
T  8687842 tttctagagagaaacacaaagcaaggtagttaggagtagattc-aagccaagatttgttga 8687783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 428
Target Start/End: Original strand, 6730 - 6863
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||||| || ||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| ||||||| |||| |||| |||||    
T  6730 agagagaaatacaaggcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatcc 6828  T
Q  394 tttttaaagctatcatagacaaatgtagctacatc 428  Q
    |||  |||||||||||||||| |||||||||||||    
T  6829 tttgcaaagctatcatagacatatgtagctacatc 6863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 431
Target Start/End: Original strand, 14176 - 14318
Alignment:
Q  287 ggcatttctagagagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctctt 385  Q
    |||||||||||||||| | |  |||||||||||||||| ||||||||| | ||||||||||||| | || |||  |||||| || ||||||| |||| ||    
T  14176 ggcatttctagagagacaca--aagcaaggtgttaggagtagattcaa-ctcaagatttgttgagacatcatgagtttagggatggaatcttcatctttt 14272  T
Q  386 ctccatcctttttaaagctatcatagacaaatgtagctacatctac 431  Q
     | ||||||||  |||||||||||| ||| ||||||||||||||||    
T  14273 tttcatcctttgcaaagctatcatatacatatgtagctacatctac 14318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 116731 - 116594
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| ||||| | |||| |||| |||||    
T  116731 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcctcatcttttcttcatcc 116633  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  116632 tttgcaaagctatcatagacatatgtagctacatctact 116594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 27167261 - 27167124
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||  | || |||||| | | ||| ||||||| |||| |||| |||||    
T  27167261 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgggacatcatggatcttgtcatggaatcttcatcttttcttcatcc 27167163  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  27167162 tttgcaaagctatcatagacatatgtagctacatctact 27167124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 431
Target Start/End: Complemental strand, 34869921 - 34869774
Alignment:
Q  287 ggcatttctaga--gagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atct 382  Q
    ||||||||||||  |||||| | ||| |||||| ||||||| ||||||| || |||||||||||||| | || |||||| | | ||||||||||| ||||    
T  34869921 ggcatttctagagagagaaacacaaaacaaggtagttaggagtagattc-aagccaagatttgttgagacatcatggatcttgtcattgaatcttcatct 34869823  T
Q  383 cttctccatcctttttaaagctatcatagacaaatgtagctacatctac 431  Q
    ||| | ||| ||||  |||||||||||||||| ||||||||||||||||    
T  34869822 cttattcattctttgcaaagctatcatagacatatgtagctacatctac 34869774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 7314963 - 7315100
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  7314963 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 7315061  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  7315062 tttgcaaagctatcatagacatatgtagctacatctact 7315100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 9404422 - 9404559
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  9404422 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 9404520  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  9404521 tttgcaaagctatcatagacatatgtagctacatctact 9404559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 11723440 - 11723303
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  11723440 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 11723342  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  11723341 tttgcaaagctatcatagacatatgtagctacatctact 11723303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 11766753 - 11766890
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  11766753 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 11766851  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  11766852 tttgcaaagctatcatagacatatgtagctacatctact 11766890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 34456295 - 34456432
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  34456295 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 34456393  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  34456394 tttgcaaagctatcatagacatatgtagctacatctact 34456432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 429
Target Start/End: Original strand, 33434601 - 33434735
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  33434601 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 33434699  T
Q  394 tttttaaagctatcatagacaaatgtagctacatct 429  Q
    |||  |||||||||||||||| ||||||||||||||    
T  33434700 tttgcaaagctatcatagacatatgtagctacatct 33434735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 308 - 432
Target Start/End: Original strand, 14344479 - 14344604
Alignment:
Q  308 aaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcctttttaaagcta 405  Q
    |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || ||||||||  |||||||    
T  14344479 aaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttgcaaagcta 14344577  T
Q  406 tcatagacaaatgtagctacatctact 432  Q
    ||||||||| |||||||||||||||||    
T  14344578 tcatagacatatgtagctacatctact 14344604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 16904773 - 16904636
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||  ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  16904773 agagagaaacacaaagcaaggtagttaggggtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 16904675  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  16904674 tttgcaaagctatcatagacatatgtagctacatctact 16904636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 30607240 - 30607103
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || || ||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  30607240 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aatatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 30607142  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  30607141 tttgcaaagctatcatagacatatgtagctacatctact 30607103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 427
Target Start/End: Original strand, 31845978 - 31846110
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  31845978 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 31846076  T
Q  394 tttttaaagctatcatagacaaatgtagctacat 427  Q
    |||  |||||||||||||||| ||||||||||||    
T  31846077 tttgcaaagctatcatagacatatgtagctacat 31846110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 378
Target Start/End: Original strand, 32226833 - 32226912
Alignment:
Q  298 agagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt 378  Q
    ||||||| | ||||||||||||||||| ||||||| |||| || ||||||||| | || |||||| |||||||||||||||    
T  32226833 agagaaacacaaagcaaggtgttaggagtagattc-aacctaaaatttgttgagacatcatggatctaggcattgaatctt 32226912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 432
Target Start/End: Original strand, 24835822 - 24835870
Alignment:
Q  384 ttctccatcctttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||| ||||||||  |||||||||||||||| |||||||||||||||||    
T  24835822 ttcttcatcctttgcaaagctatcatagacatatgtagctacatctact 24835870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 432
Target Start/End: Original strand, 6269977 - 6270025
Alignment:
Q  384 ttctccatcctttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||| ||||||||  |||||||||||||||| ||||||||| |||||||    
T  6269977 ttcttcatcctttgcaaagctatcatagacatatgtagctatatctact 6270025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 431
Target Start/End: Complemental strand, 37251985 - 37251933
Alignment:
Q  379 atctcttctccatcctttttaaagctatcatagacaaatgtagctacatctac 431  Q
    |||| |||| ||||||||  |||||||||||||| | ||||||||||||||||    
T  37251985 atcttttcttcatcctttgcaaagctatcatagatatatgtagctacatctac 37251933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 21677831 - 21677694
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | ||||||| || ||||||||||||||||| |||||||||  |||| | || ||| || |||||||  |||||| |||| |||| |||||    
T  21677831 agagagaaacacaaagcaaagtagttaggaatagattcaa-cccaagattcattgagacatcatgaatctaggcataaaatcttcatcttttcttcatcc 21677733  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  21677732 tttgcaaagctatcatagacatatgtagctacatctact 21677694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 40995713 - 40995576
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | ||| |||||| ||||||| ||||||||| || |||||||||||| | || |||||| |   ||||||||||| ||||||||| |||||    
T  40995713 agagagaaacacaaatcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttatcattgaatcttcatctcttcttcatcc 40995615  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| ||||||||| |||||||    
T  40995614 tttgcaaagctatcatagacatatgtagctatatctact 40995576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 431
Target Start/End: Original strand, 53895415 - 53895513
Alignment:
Q  334 aacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcctttttaaagctatcatagacaaatgtagctacatctac 431  Q
    ||||||||||||||||| | || ||| || ||||||| || |||| ||||||||| ||||||||  |||||||||||||||| ||||||||||||||||    
T  53895415 aacccaagatttgttgagacatcatgaatctaggcatggagtcttcatctcttcttcatcctttgcaaagctatcatagacatatgtagctacatctac 53895513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 427
Target Start/End: Original strand, 26069723 - 26069855
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||| | ||||||||| || |||||||||||| | || |||||| | | ||||||||||| | ||||||| |||||    
T  26069723 agagagaaacacaaagcaaggtagttagaagtagattcaagcc-aagatttgttgagacatcatggatcttgtcattgaatcttcaactcttcttcatcc 26069821  T
Q  394 tttttaaagctatcatagacaaatgtagctacat 427  Q
    |||  |||||||||||||||| ||||||||||||    
T  26069822 tttgcaaagctatcatagacatatgtagctacat 26069855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 4839300 - 4839163
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  4839300 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 4839202  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  4839201 tttgcaaagctatcatagacatatgtagctacatctact 4839163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 19247991 - 19247854
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||| ||| |||||||||||| || ||||||||| | || ||| || | | ||| ||||||| |||| |||| |||||    
T  19247991 agagagaaacacaaagcaaggtagttgggagtagattcaaacc-aatatttgttgagacatcatgaatcttgtcatggaatcttcatcttttcttcatcc 19247893  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  19247892 tttgcaaagctatcatagacatatgtagctacatctact 19247854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 22047679 - 22047816
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| |||||||  |||||||| || |||||||||||| | ||||||||| | | ||| |||||||  | ||| || |||||    
T  22047679 agagagaaacacaaagcaaggtagttaggagaagattcaagcc-aagatttgttgagacattatggatcttgtcatggaatcttcaccctttcttcatcc 22047777  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  22047778 tttgcaaagctatcatagacatatgtagctacatctact 22047816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 431
Target Start/End: Complemental strand, 30218555 - 30218419
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| |||| || ||||||||| ||||||||||||||| |  | |||  | ||||||| ||||||| |||| |||| |||||    
T  30218555 agagagaaacacaaagcaaggtagttaagagtagattcaa-cccaagatttgttgagacgtcatgagtctaggcatggaatcttcatcttttcttcatcc 30218457  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctac 431  Q
    ||   |||||||||||||||| ||||||||||||||||    
T  30218456 ttagcaaagctatcatagacatatgtagctacatctac 30218419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 432
Target Start/End: Complemental strand, 42533062 - 42532914
Alignment:
Q  287 ggcatttctaga--gagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atct 382  Q
    ||||||||||||  |||||| | |||||||||| ||||||| ||||||| || || ||||||||||| |  | |||||| | | ||| ||||||| ||||    
T  42533062 ggcatttctagagagagaaacacaaagcaaggtggttaggagtagattc-aagcctagatttgttgagacgtcatggatcttgtcatggaatcttcatct 42532964  T
Q  383 cttctccatcctttttaaagctatcatagacaaatgtagctacatctact 432  Q
     |||| |||| |||  |||||||||||||||| |||||||||||||||||    
T  42532963 tttcttcatcatttgcaaagctatcatagacatatgtagctacatctact 42532914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 430
Target Start/End: Original strand, 20948743 - 20948878
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||  | ||||||||| |||||||||||| || | || ||| || ||||||| ||||||| |||| |||| |||||    
T  20948743 agagagaaacacaaagcaaggtagttaaaagtagattcaa-cccaagatttgtcgagacatcatgaatctaggcatggaatcttcatcttttcttcatcc 20948841  T
Q  394 tttttaaagctatcatagacaaatgtagctacatcta 430  Q
    ||| | ||||||||||| | | |||||||||||||||    
T  20948842 tttgtcaagctatcataaatatatgtagctacatcta 20948878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 323436 - 323573
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||| | ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  323436 agagagaaacacaaagcaagatagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 323534  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||| ||| |||||||||||||||||    
T  323535 tttgcaaagctatcataaacatatgtagctacatctact 323573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 421
Target Start/End: Complemental strand, 33110874 - 33110741
Alignment:
Q  289 catttctagagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttc 386  Q
    |||||||||||||||| | || ||||||| |||| || ||||||||| ||||||||||||||| | || ||| ||||||||||   ||||| |||| ||     
T  33110874 catttctagagagaaacacaaggcaaggtagttaagagtagattcaa-cccaagatttgttgagacatcatgaatttaggcatgacatcttcatcttttt 33110776  T
Q  387 tccatcctttttaaagctatcatagacaaatgtag 421  Q
    | ||||||||  ||||||||| |||||| ||||||    
T  33110775 ttcatcctttgcaaagctatcgtagacatatgtag 33110741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 432
Target Start/End: Complemental strand, 44432205 - 44432080
Alignment:
Q  308 aaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcctttttaaagcta 405  Q
    |||||||||| ||||||| ||||||||| || ||||||| |||| | || |||||| | | ||| |||||||  | ||| || ||||||||  |||||||    
T  44432205 aaagcaaggtagttaggagtagattcaagcc-aagatttcttgagacatcatggatcttgccatggaatcttcaccctttcttcatcctttacaaagcta 44432107  T
Q  406 tcatagacaaatgtagctacatctact 432  Q
    ||||||||| |||||||||||||||||    
T  44432106 tcatagacatatgtagctacatctact 44432080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 432
Target Start/End: Complemental strand, 46692188 - 46692063
Alignment:
Q  308 aaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcctttttaaagcta 405  Q
    |||||||||| ||||||| ||||||||| || |||||||||||| | || ||| || | | ||||||||||| || |||||  ||||||||  |||||||    
T  46692188 aaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatgaatcttgtcattgaatcttcatttcttcctcatcctttgcaaagcta 46692090  T
Q  406 tcatagacaaatgtagctacatctact 432  Q
    ||||||||| |||||| || |||||||    
T  46692089 tcatagacatatgtagttatatctact 46692063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 432
Target Start/End: Original strand, 1187965 - 1188100
Alignment:
Q  298 agagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcctt 395  Q
    ||||||| | |||||||||| ||||||| |||||||||  | |||||||||||| | || ||| || | | |||  |||||| |||| |||| |||||||    
T  1187965 agagaaacacaaagcaaggtagttaggagtagattcaagtc-aagatttgttgagacatcatgaatcttgtcatgaaatcttcatcttttcttcatcctt 1188063  T
Q  396 tttaaagctatcatagacaaatgtagctacatctact 432  Q
    |  ||||||||||||| || |||||||||||||||||    
T  1188064 tgcaaagctatcataggcatatgtagctacatctact 1188100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 432
Target Start/End: Complemental strand, 5273637 - 5273589
Alignment:
Q  384 ttctccatcctttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||| ||||||||  |||||||||||||||| |||||||||||||||||    
T  5273637 ttcttcatcctttgcaaagctatcatagacatatgtagctacatctact 5273589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 432
Target Start/End: Original strand, 52618595 - 52618638
Alignment:
Q  389 catcctttttaaagctatcatagacaaatgtagctacatctact 432  Q
    ||||||||  |||||||||||||||| |||||||||||||||||    
T  52618595 catcctttgcaaagctatcatagacatatgtagctacatctact 52618638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 424
Target Start/End: Complemental strand, 26373793 - 26373664
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || || ||||||||| | || |||||| |   ||||||||||| || ||||||  ||||    
T  26373793 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aatatttgttgagatatcatggatcttatcattgaatcttcatttcttctttatcc 26373695  T
Q  394 tttttaaagctatcatagacaaatgtagcta 424  Q
    |||  |||||||||||||||| || ||||||    
T  26373694 tttgcaaagctatcatagacatatatagcta 26373664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 431
Target Start/End: Original strand, 55326812 - 55326910
Alignment:
Q  334 aacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcctttttaaagctatcatagacaaatgtagctacatctac 431  Q
    |||||||||||  |||| | || ||| || |||||||  |||||| |||| |||| ||||| ||  |||||||||||||||| ||||||||||||||||    
T  55326812 aacccaagattcattgagacatcatgaatctaggcatgaaatcttcatcttttcttcatccattccaaagctatcatagacatatgtagctacatctac 55326910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 29063 - 28926
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  29063 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 28965  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  28964 tttgcaaagctatcatagacatatgtagctacatctact 28926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 431
Target Start/End: Complemental strand, 1154 - 1012
Alignment:
Q  289 catttctagagagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttct 387  Q
    |||||||||||||||| | |||| |||||||||||| |||||||  | |||||||||||||| | || |||  | ||||||| |||| || || ||||||    
T  1154 catttctagagagaaacacaaagtaaggtgttaggagtagattc-tatccaagatttgttgagacatcatgagtctaggcatggaattttcatatcttct 1056  T
Q  388 ccatcctttttaaagctatcatagacaaatgtagctacatctac 431  Q
     | ||||||  |||| ||||| ||||| ||||||||||||||||    
T  1055 tcgtcctttgcaaagttatcacagacatatgtagctacatctac 1012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1494 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold1494
Description:

Target: scaffold1494; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 1562 - 1699
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| |   ||| |||||||  | ||| || |||||    
T  1562 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttatcatggaatcttcaccctttcttcatcc 1660  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  1661 tttgcaaagctatcatagacatatgtagctacatctact 1699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0336 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 8740 - 8877
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | || ||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  8740 agagagaaacacaaggcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatagaatcttcaccctttcttcatcc 8838  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||||||||||||||    
T  8839 tttgcaaagctatcatagacatatgtagctacatctact 8877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 25814 - 25677
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatcttatctctt-ctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| |||||||  | ||| || |||||    
T  25814 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcc 25716  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||| | |||||||||||||||||    
T  25715 tttgcaaagctatcatagatatatgtagctacatctact 25677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 76615 - 76478
Alignment:
Q  296 agagagaaatataaagcaaggt-gttaggaatagattcaaacccaagatttgttgacaaattatggatttaggcattgaatctt-atctcttctccatcc 393  Q
    ||||||||| | |||||||||| ||||||| ||||||||| || |||||||||||| | || |||||| | | ||| ||||||| | |  |||| |||||    
T  76615 agagagaaacacaaagcaaggtagttaggagtagattcaagcc-aagatttgttgagacatcatggatcttgtcatagaatcttcaacaattcttcatcc 76517  T
Q  394 tttttaaagctatcatagacaaatgtagctacatctact 432  Q
    |||  |||||||||||||||| |||||| ||||||||||    
T  76516 tttgcaaagctatcatagacatatgtagatacatctact 76478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 359
Target Start/End: Complemental strand, 35456 - 35384
Alignment:
Q  285 atggcatttctagagagaaatataaagcaaggtgttaggaatagattcaaacccaagatttgttgacaaattatg 359  Q
    ||||||||||||| |||||| | ||||||||||||||||| |||||||  |||||||||||||||| | ||||||    
T  35456 atggcatttctag-gagaaacacaaagcaaggtgttaggagtagattc-tacccaagatttgttgagacattatg 35384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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