View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15073_low_8 (Length: 319)
Name: NF15073_low_8
Description: NF15073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15073_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 302
Target Start/End: Complemental strand, 34102453 - 34102176
Alignment:
| Q |
13 |
aaaatatgttaatttgcaataacttacttactagaagaaagcaaatgagaatttttagcaaatgcctaacaatgattgttcttacacaaaacctcaaaac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34102453 |
aaaatatgttaatttgcaataacttact----agaacaaagcaaatgaaaatttttagcaaatgcctaacaatgattgttcttacacaaaacct------ |
34102364 |
T |
|
| Q |
113 |
ctatatcccaaagatgtatagtctggttcgcacaatatgtagaacagtagaacgcctatcaaatgatcatataatcataaataaccaatcaacaacacta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34102363 |
--atatcccaaagatgtatagtctggttcgcacaatatgtagaacagtagaacgcctatcaaatgatcatataatcataaataaccaatcaacaacacta |
34102266 |
T |
|
| Q |
213 |
aatctgttccaattataacataatctcagaatcatattctacaaaaattaccaaaatcaaaacctaaatctatttaaagaagtaattact |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34102265 |
aatctgttccaattataacataatctcagaatcatattctacaaaaattaccaaaatcaaaacctaaatctatttaaagaagtaattact |
34102176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University