View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15074_high_1 (Length: 477)
Name: NF15074_high_1
Description: NF15074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15074_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 45209777 - 45210234
Alignment:
| Q |
1 |
agaaagatgagagggaaacgcagcaatttggaggtttctgaactagaaattgtgaatatgtgcatgtcaccttccatgtcactgcaacaaatcagagtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209777 |
agaaagatgagagggaaacgcagcaatttggaggtttctgaactagaaattgtgaatatgtgcatgtcaccttccatgtcactgcaacaaatcagagtaa |
45209876 |
T |
|
| Q |
101 |
tgttagttaaggtataagtaaatcataatatgtgttgtcatagaaatagtctatgctataattaagtgctaaattaagttatttattcaaacagagctga |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45209877 |
tgttaattaaggtataagtaaatcataatatgtgttgtcatagaaatagtctatgctataa----gtgctaaattaagttatttattcaaacagagctga |
45209972 |
T |
|
| Q |
201 |
taattatacgacaacttaggagaattggtagtcgtaggtttacaaaatatacttacaaattgcttcagtcactctcctttcgttcggtgatgtgaattca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209973 |
taattatacgacaacttaggagaattggtagtcgtaggtttacaaaatatacttacaaattgcttcagtcactctcctttcgttcggtgatgtgaattca |
45210072 |
T |
|
| Q |
301 |
gtaagttccgcaatttttggttggttgcatgtataacctggtcctggtgttttcaaagtgaaattctgcggcgctatgatggcagttttgttattgccag |
400 |
Q |
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| T |
45210073 |
gtaagttccgcaatttttggttggttgcatgtataacctggtcctggtgttttcaaagtgaaattctgcggcgctatgatggcagttttgttattgccag |
45210172 |
T |
|
| Q |
401 |
ctctaccgacactgacttgaaacgctgcaactgcatttggcggatcttgtgcccatgttctt |
462 |
Q |
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| T |
45210173 |
ctctaccgacactgacttgaaacgctgcaactgcatttggcggatcttgtgcccatgttctt |
45210234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 5007903 - 5007817
Alignment:
| Q |
1 |
agaaagatgagagggaaacgcagcaatttggaggtttctgaactagaaattgtgaatatgtgcatgtcaccttccatgtcactgcaa |
87 |
Q |
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|||||||||||||||| || |||||| | |||| ||||||| | ||||||||||||||||||||||| || |||||||||||||||| |
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| T |
5007903 |
agaaagatgagagggagacacagcaagtcggagttttctgagccagaaattgtgaatatgtgcatgtaacattccatgtcactgcaa |
5007817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 5550601 - 5550497
Alignment:
| Q |
1 |
agaaagatgagagggaaacgcagcaatttggaggtttctgaactagaaattgtgaatatgtgcatgtcaccttccatgtcactgcaacaaatcagagtaa |
100 |
Q |
| |
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|||| |||||||||| ||| || ||| |||||| || ||| ||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| | |
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| T |
5550601 |
agaatgatgagagggcaacacaacaagttggagtttgttgagctaaaaattgtgaatatgtgcatgtcacattccatgtcactgcaaacaatcagagtta |
5550502 |
T |
|
| Q |
101 |
tgtta |
105 |
Q |
| |
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||||| |
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| T |
5550501 |
tgtta |
5550497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 5540246 - 5540344
Alignment:
| Q |
28 |
ttggaggtttctgaactagaaattgtgaatatgtgcatgtcaccttccatgtcactgcaacaaatcagagtaatgttagttaaggtataagtaaatcata |
127 |
Q |
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|||||| |||| || ||||||||||||||||||||||| |||| ||||||||||||| || ||||||||||||| |||||||| | ||||||||||| |
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| T |
5540246 |
ttggagttttcggagctagaaattgtgaatatgtgcatctcacattccatgtcactg-aaaaaatcagagtaat----gttaaggtcttagtaaatcata |
5540340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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