View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15074_high_13 (Length: 227)

Name: NF15074_high_13
Description: NF15074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15074_high_13
NF15074_high_13
[»] chr8 (2 HSPs)
chr8 (38-114)||(44007326-44007402)
chr8 (1-37)||(44007420-44007457)
[»] chr4 (2 HSPs)
chr4 (38-114)||(33169370-33169446)
chr4 (1-37)||(33169464-33169500)


Alignment Details
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 44007402 - 44007326
Alignment:
Q  38 gaccacccacacatctcttccattttccaactcactcactttgtttcatcaccttcacatattcacatcactacaca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44007402 gaccacccacacatctcttccattttccaactcactcactttgtttcatcaccttcacatattcacatcactacaca 44007326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44007457 - 44007420
Alignment:
Q  1 ctctctcaattcttcaaaatgtgac-aaaacaaaacac 37  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  44007457 ctctctcaattcttcaaaatgtgacaaaaacaaaacac 44007420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 33169446 - 33169370
Alignment:
Q  38 gaccacccacacatctcttccattttccaactcactcactttgtttcatcaccttcacatattcacatcactacaca 114  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33169446 gaccacccacacatctcttccaatttccaactcactcactttgtttcatcaccttcacatattcacatcactacaca 33169370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33169500 - 33169464
Alignment:
Q  1 ctctctcaattcttcaaaatgtgacaaaacaaaacac 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  33169500 ctctctcaattcttcaaaatgtgacaaaacaaaacac 33169464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University